Wall clock time and date at job start Mon Mar 30 2020 02:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.47134 * 2 1 4 4 C 1.37190 * 119.99806 * 263.75585 * 3 2 1 5 5 H 1.08008 * 119.99661 * 143.10588 * 4 3 2 6 6 C 1.38878 * 120.00154 * 323.10892 * 4 3 2 7 7 N 1.31473 * 119.99773 * 157.00419 * 6 4 3 8 8 Si 1.86795 * 119.99765 * 336.99970 * 6 4 3 9 9 H 1.48501 * 109.47126 * 95.14919 * 8 6 4 10 10 H 1.48502 * 109.47232 * 215.14715 * 8 6 4 11 11 H 1.48496 * 109.47179 * 335.14725 * 8 6 4 12 12 C 1.34776 * 119.99914 * 83.75434 * 3 2 1 13 13 O 1.21587 * 119.99804 * 180.02562 * 12 3 2 14 14 N 1.34775 * 120.00224 * 359.97438 * 12 3 2 15 15 C 1.46503 * 119.99970 * 179.97438 * 14 12 3 16 16 C 1.53779 * 113.61285 * 155.00027 * 15 14 12 17 17 C 1.53788 * 87.16833 * 139.93928 * 16 15 14 18 18 C 1.53780 * 113.61533 * 252.49927 * 15 14 12 19 19 H 1.08998 * 109.46729 * 180.02562 * 1 2 3 20 20 H 1.08994 * 109.46931 * 299.99875 * 1 2 3 21 21 H 1.08996 * 109.47287 * 60.00325 * 1 2 3 22 22 H 1.08995 * 109.47579 * 239.99741 * 2 1 3 23 23 H 1.09005 * 109.47303 * 119.99415 * 2 1 3 24 24 H 0.97008 * 119.99323 * 180.02562 * 7 6 4 25 25 H 0.96996 * 120.00018 * 0.02562 * 14 12 3 26 26 H 1.09003 * 112.84650 * 23.80521 * 15 14 12 27 27 H 1.08997 * 113.61561 * 254.52668 * 16 15 14 28 28 H 1.09001 * 113.61522 * 25.35502 * 16 15 14 29 29 H 1.08997 * 113.61044 * 89.16491 * 17 16 15 30 30 H 1.09004 * 113.61385 * 220.05685 * 17 16 15 31 31 H 1.09000 * 113.61145 * 334.57304 * 18 15 14 32 32 H 1.09009 * 113.61395 * 105.38284 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3688 1.9848 -1.1811 5 1 2.1581 3.0329 -1.3352 6 6 2.9945 1.2483 -2.1784 7 7 2.9304 1.6482 -3.4292 8 14 3.9272 -0.3104 -1.7427 9 1 3.0395 -1.4864 -1.9273 10 1 5.1128 -0.4415 -2.6273 11 1 4.3709 -0.2423 -0.3272 12 6 2.1233 2.0589 1.1603 13 8 2.5281 3.2053 1.1602 14 7 1.7784 1.4661 2.3205 15 6 1.8930 2.2025 3.5818 16 6 0.9483 1.6907 4.6819 17 6 2.1082 1.9010 5.6696 18 6 3.0560 1.7278 4.4689 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 1.8934 -0.5138 -0.8899 23 1 1.8934 -0.5138 0.8901 24 1 3.3671 1.1334 -4.1259 25 1 1.4551 0.5516 2.3205 26 1 1.8593 3.2835 3.4452 27 1 0.0956 2.3447 4.8643 28 1 0.6623 0.6459 4.5606 29 1 2.1344 2.8995 6.1060 30 1 2.1964 1.1100 6.4144 31 1 3.3473 0.6928 4.2899 32 1 3.9054 2.4110 4.4780 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127913234.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:56 Heat of formation + Delta-G solvation = 3.935585 kcal Electronic energy + Delta-G solvation = -14666.094316 eV Core-core repulsion = 12242.118955 eV Total energy + Delta-G solvation = -2423.975360 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.57017 -37.93315 -35.10681 -32.77373 -31.70887 -29.68377 -25.56916 -25.45874 -23.62073 -22.81979 -19.69817 -19.50953 -17.20071 -16.70652 -16.08364 -15.31486 -14.93769 -14.30377 -13.71298 -13.34284 -12.92383 -12.51104 -12.38967 -12.30894 -12.21169 -11.83097 -11.46698 -11.16939 -10.98557 -10.67936 -10.45379 -10.24367 -10.06286 -9.80969 -9.06421 -8.73066 -8.29419 -7.64581 -6.27482 -3.82561 3.09254 3.28827 3.33807 3.82020 4.21196 4.27596 4.71731 4.77297 4.87265 5.03052 5.17495 5.25548 5.53760 5.71513 5.79184 5.86224 5.90816 5.92910 5.94208 6.15830 6.20506 6.21716 6.44490 6.51483 6.77995 7.29390 7.42154 7.95780 8.47482 8.92751 9.13316 9.48821 10.04104 10.85428 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.042458 B = 0.009283 C = 0.009100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.313964 B = 3015.390184 C = 3076.195573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.092 3.908 3 N -0.490 5.490 4 C -0.296 4.296 5 H 0.103 0.897 6 C 0.056 3.944 7 N -0.872 5.872 8 Si 0.873 3.127 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.267 1.267 12 C 0.673 3.327 13 O -0.604 6.604 14 N -0.751 5.751 15 C 0.148 3.852 16 C -0.150 4.150 17 C -0.139 4.139 18 C -0.157 4.157 19 H 0.053 0.947 20 H 0.050 0.950 21 H 0.067 0.933 22 H 0.076 0.924 23 H 0.051 0.949 24 H 0.271 0.729 25 H 0.387 0.613 26 H 0.111 0.889 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.753 -5.944 13.593 15.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.033 4.033 3 N -0.216 5.216 4 C -0.424 4.424 5 H 0.121 0.879 6 C -0.148 4.148 7 N -0.509 5.509 8 Si 0.701 3.299 9 H -0.205 1.205 10 H -0.216 1.216 11 H -0.191 1.191 12 C 0.376 3.624 13 O -0.484 6.484 14 N -0.408 5.408 15 C 0.041 3.959 16 C -0.188 4.188 17 C -0.177 4.177 18 C -0.197 4.197 19 H 0.072 0.928 20 H 0.069 0.931 21 H 0.086 0.914 22 H 0.094 0.906 23 H 0.070 0.930 24 H 0.081 0.919 25 H 0.222 0.778 26 H 0.129 0.871 27 H 0.088 0.912 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.398 -5.109 13.318 14.664 hybrid contribution 0.433 -1.439 0.046 1.503 sum -2.964 -6.547 13.364 15.174 Atomic orbital electron populations 1.22155 0.96525 1.00775 1.02770 1.21681 0.94471 0.86017 1.01090 1.43010 1.62086 1.11615 1.04921 1.18887 1.37555 0.97965 0.87958 0.87913 1.25311 0.96518 0.98106 0.94866 1.69788 1.41655 1.40279 0.99196 0.87027 0.80370 0.83172 0.79344 1.20507 1.21569 1.19115 1.16244 0.80369 0.85728 0.80013 1.90759 1.54556 1.17355 1.85694 1.45323 1.73465 1.16564 1.05453 1.22156 0.94580 0.97985 0.81172 1.23356 0.97542 1.01649 0.96299 1.22695 0.96859 1.01860 0.96298 1.23518 0.98271 1.01948 0.95939 0.92846 0.93073 0.91353 0.90615 0.93047 0.91855 0.77829 0.87148 0.91179 0.90118 0.90099 0.91414 0.90255 0.91300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 10.10 37.16 0.38 -2.42 16 2 C 0.09 1.86 4.38 -4.04 -0.02 1.84 16 3 N -0.49 -12.25 2.20 -120.17 -0.26 -12.52 16 4 C -0.30 -8.65 9.37 -14.92 -0.14 -8.79 16 5 H 0.10 3.37 7.90 -52.48 -0.41 2.96 16 6 C 0.06 1.60 5.26 -17.47 -0.09 1.51 16 7 N -0.87 -25.84 13.96 55.49 0.77 -25.07 16 8 Si 0.87 21.16 25.08 -169.99 -4.26 16.89 16 9 H -0.28 -6.23 6.66 56.52 0.38 -5.86 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 12 C 0.67 16.44 8.19 -86.92 -0.71 15.73 16 13 O -0.60 -17.19 15.80 5.29 0.08 -17.10 16 14 N -0.75 -13.86 5.20 -57.88 -0.30 -14.17 16 15 C 0.15 2.32 4.24 -67.12 -0.28 2.04 16 16 C -0.15 -1.73 7.83 -25.92 -0.20 -1.93 16 17 C -0.14 -1.47 8.10 -25.83 -0.21 -1.68 16 18 C -0.16 -2.13 7.88 -25.83 -0.20 -2.33 16 19 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 20 H 0.05 0.82 7.85 -51.93 -0.41 0.41 16 21 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 22 H 0.08 1.65 3.56 -51.93 -0.18 1.47 16 23 H 0.05 0.89 6.71 -51.93 -0.35 0.54 16 24 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 25 H 0.39 6.14 6.25 -40.82 -0.26 5.88 16 26 H 0.11 1.95 7.46 -51.93 -0.39 1.57 16 27 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.08 0.85 8.12 -51.93 -0.42 0.43 16 29 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.07 0.97 8.14 -51.92 -0.42 0.55 16 LS Contribution 261.61 15.07 3.94 3.94 Total: -1.00 -32.96 261.61 -6.05 -39.01 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -4.54 Total: 5.05 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: -1.49 Total: 3.96 kcal Atomic # 7 Polarization: -51.96 SS G_CDS: 0.21 Total: -51.75 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: 0.08 Total: -17.10 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.26 Total: 16.89 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -32.96 -6.05 -39.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127913234.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.945 kcal (2) G-P(sol) polarization free energy of solvation -32.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds