Wall clock time and date at job start Mon Mar 30 2020 02:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.47134 * 2 1 4 4 C 1.37190 * 119.99806 * 263.75585 * 3 2 1 5 5 H 1.08008 * 119.99661 * 143.10588 * 4 3 2 6 6 C 1.38878 * 120.00154 * 323.10892 * 4 3 2 7 7 N 1.31473 * 119.99773 * 157.00419 * 6 4 3 8 8 Si 1.86795 * 119.99765 * 336.99970 * 6 4 3 9 9 H 1.48501 * 109.47126 * 95.14919 * 8 6 4 10 10 H 1.48502 * 109.47232 * 215.14715 * 8 6 4 11 11 H 1.48496 * 109.47179 * 335.14725 * 8 6 4 12 12 C 1.34776 * 119.99914 * 83.75434 * 3 2 1 13 13 O 1.21587 * 119.99804 * 180.02562 * 12 3 2 14 14 N 1.34775 * 120.00224 * 359.97438 * 12 3 2 15 15 C 1.46503 * 119.99970 * 179.97438 * 14 12 3 16 16 C 1.53779 * 113.61285 * 155.00027 * 15 14 12 17 17 C 1.53788 * 87.16833 * 139.93928 * 16 15 14 18 18 C 1.53780 * 113.61533 * 252.49927 * 15 14 12 19 19 H 1.08998 * 109.46729 * 180.02562 * 1 2 3 20 20 H 1.08994 * 109.46931 * 299.99875 * 1 2 3 21 21 H 1.08996 * 109.47287 * 60.00325 * 1 2 3 22 22 H 1.08995 * 109.47579 * 239.99741 * 2 1 3 23 23 H 1.09005 * 109.47303 * 119.99415 * 2 1 3 24 24 H 0.97008 * 119.99323 * 180.02562 * 7 6 4 25 25 H 0.96996 * 120.00018 * 0.02562 * 14 12 3 26 26 H 1.09003 * 112.84650 * 23.80521 * 15 14 12 27 27 H 1.08997 * 113.61561 * 254.52668 * 16 15 14 28 28 H 1.09001 * 113.61522 * 25.35502 * 16 15 14 29 29 H 1.08997 * 113.61044 * 89.16491 * 17 16 15 30 30 H 1.09004 * 113.61385 * 220.05685 * 17 16 15 31 31 H 1.09000 * 113.61145 * 334.57304 * 18 15 14 32 32 H 1.09009 * 113.61395 * 105.38284 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3688 1.9848 -1.1811 5 1 2.1581 3.0329 -1.3352 6 6 2.9945 1.2483 -2.1784 7 7 2.9304 1.6482 -3.4292 8 14 3.9272 -0.3104 -1.7427 9 1 3.0395 -1.4864 -1.9273 10 1 5.1128 -0.4415 -2.6273 11 1 4.3709 -0.2423 -0.3272 12 6 2.1233 2.0589 1.1603 13 8 2.5281 3.2053 1.1602 14 7 1.7784 1.4661 2.3205 15 6 1.8930 2.2025 3.5818 16 6 0.9483 1.6907 4.6819 17 6 2.1082 1.9010 5.6696 18 6 3.0560 1.7278 4.4689 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 1.8934 -0.5138 -0.8899 23 1 1.8934 -0.5138 0.8901 24 1 3.3671 1.1334 -4.1259 25 1 1.4551 0.5516 2.3205 26 1 1.8593 3.2835 3.4452 27 1 0.0956 2.3447 4.8643 28 1 0.6623 0.6459 4.5606 29 1 2.1344 2.8995 6.1060 30 1 2.1964 1.1100 6.4144 31 1 3.3473 0.6928 4.2899 32 1 3.9054 2.4110 4.4780 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127913234.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:55 Heat of formation + Delta-G solvation = -19.809024 kcal Electronic energy + Delta-G solvation = -14667.123959 eV Core-core repulsion = 12242.118955 eV Total energy + Delta-G solvation = -2425.005004 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.21053 -39.27624 -37.01970 -34.64523 -33.55561 -31.36769 -27.33301 -26.47750 -25.12969 -24.38914 -21.40501 -20.77607 -19.01220 -18.54466 -17.78421 -16.94333 -16.21481 -15.95281 -15.47089 -15.08515 -14.62387 -14.21424 -14.04098 -13.61874 -13.33009 -13.21300 -13.01358 -12.71647 -12.57276 -12.14535 -11.94138 -11.66950 -11.48196 -11.28037 -11.12625 -10.71146 -9.96869 -9.55644 -8.46647 -6.06176 1.18571 1.33405 1.44492 2.16641 2.23535 2.33540 2.96557 3.43348 3.68926 3.81382 4.01419 4.04779 4.08598 4.39431 4.43127 4.71665 4.84643 4.86343 4.90927 4.96578 5.10685 5.11832 5.20601 5.35842 5.43620 5.54768 5.85851 5.98469 6.26220 6.92759 7.07367 7.52114 8.09452 8.71490 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.042458 B = 0.009283 C = 0.009100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.313964 B = 3015.390184 C = 3076.195573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.082 3.918 3 N -0.501 5.501 4 C -0.315 4.315 5 H 0.040 0.960 6 C 0.009 3.991 7 N -0.916 5.916 8 Si 0.950 3.050 9 H -0.238 1.238 10 H -0.290 1.290 11 H -0.265 1.265 12 C 0.666 3.334 13 O -0.659 6.659 14 N -0.729 5.729 15 C 0.120 3.880 16 C -0.132 4.132 17 C -0.121 4.121 18 C -0.159 4.159 19 H 0.097 0.903 20 H 0.061 0.939 21 H 0.037 0.963 22 H 0.064 0.936 23 H 0.090 0.910 24 H 0.278 0.722 25 H 0.404 0.596 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.102 0.898 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.202 -9.424 16.089 19.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.040 4.040 3 N -0.227 5.227 4 C -0.444 4.444 5 H 0.058 0.942 6 C -0.192 4.192 7 N -0.555 5.555 8 Si 0.773 3.227 9 H -0.162 1.162 10 H -0.217 1.217 11 H -0.190 1.190 12 C 0.369 3.631 13 O -0.543 6.543 14 N -0.386 5.386 15 C 0.014 3.986 16 C -0.170 4.170 17 C -0.159 4.159 18 C -0.198 4.198 19 H 0.116 0.884 20 H 0.080 0.920 21 H 0.057 0.943 22 H 0.082 0.918 23 H 0.108 0.892 24 H 0.088 0.912 25 H 0.242 0.758 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.120 0.880 29 H 0.105 0.895 30 H 0.113 0.887 31 H 0.106 0.894 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.894 -8.640 15.859 18.475 hybrid contribution 0.537 -0.247 -0.729 0.939 sum -3.356 -8.888 15.130 17.865 Atomic orbital electron populations 1.22085 0.94085 1.03333 1.01855 1.21973 0.96592 0.83154 1.02305 1.43025 1.62599 1.13373 1.03717 1.18454 1.39467 0.96028 0.90437 0.94245 1.26078 0.96530 1.02517 0.94097 1.69904 1.42451 1.42665 1.00466 0.85824 0.78747 0.79407 0.78687 1.16245 1.21664 1.18981 1.16524 0.80120 0.85114 0.81339 1.90710 1.56896 1.19962 1.86732 1.45118 1.71989 1.17186 1.04354 1.22551 0.98536 0.96569 0.80896 1.23317 0.97384 1.02784 0.93508 1.22652 0.94420 1.03290 0.95563 1.23540 0.97513 1.01872 0.96883 0.88411 0.92009 0.94346 0.91753 0.89165 0.91220 0.75835 0.90328 0.90275 0.87982 0.89461 0.88716 0.89391 0.92797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.88 10.10 71.98 0.73 -4.15 16 2 C 0.08 3.13 4.38 86.38 0.38 3.51 16 3 N -0.50 -25.29 2.20 -652.38 -1.43 -26.72 16 4 C -0.32 -19.34 9.37 84.01 0.79 -18.55 16 5 H 0.04 2.84 7.90 -2.91 -0.02 2.82 16 6 C 0.01 0.52 5.26 84.90 0.45 0.96 16 7 N -0.92 -56.10 13.96 21.65 0.30 -55.80 16 8 Si 0.95 43.22 25.08 68.60 1.72 44.94 16 9 H -0.24 -9.30 6.66 99.48 0.66 -8.64 16 10 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 11 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 12 C 0.67 33.13 8.19 179.06 1.47 34.59 16 13 O -0.66 -39.61 15.80 -3.99 -0.06 -39.67 16 14 N -0.73 -25.88 5.20 -455.29 -2.37 -28.25 16 15 C 0.12 3.63 4.24 45.52 0.19 3.82 16 16 C -0.13 -2.55 7.83 31.12 0.24 -2.31 16 17 C -0.12 -2.11 8.10 31.18 0.25 -1.85 16 18 C -0.16 -3.96 7.88 31.18 0.25 -3.71 16 19 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 20 H 0.06 1.79 7.85 -2.39 -0.02 1.77 16 21 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 22 H 0.06 2.60 3.56 -2.39 -0.01 2.59 16 23 H 0.09 2.72 6.71 -2.38 -0.02 2.70 16 24 H 0.28 15.58 8.31 -92.70 -0.77 14.81 16 25 H 0.40 11.40 6.25 -92.71 -0.58 10.82 16 26 H 0.08 2.88 7.46 -2.39 -0.02 2.86 16 27 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.10 1.60 8.12 -2.39 -0.02 1.58 16 29 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.09 1.22 8.14 -2.38 -0.02 1.21 16 31 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 Total: -1.00 -77.82 261.61 3.38 -74.44 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: 0.49 Total: 18.75 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: 4.74 Total: 12.31 kcal Atomic # 7 Polarization: -107.27 SS G_CDS: -3.50 Total: -110.77 kcal Atomic # 8 Polarization: -39.61 SS G_CDS: -0.06 Total: -39.67 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 1.72 Total: 44.94 kcal Total: -77.82 3.38 -74.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127913234.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.630 kcal (2) G-P(sol) polarization free energy of solvation -77.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds