Wall clock time and date at job start Mon Mar 30 2020 02:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 C 1.50696 * 109.47087 * 120.00096 * 2 1 3 5 5 H 1.08003 * 120.00092 * 120.00284 * 4 2 1 6 6 C 1.37879 * 120.00258 * 299.99637 * 4 2 1 7 7 N 1.31512 * 120.00015 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00053 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47344 * 60.00162 * 8 6 4 10 10 H 1.48499 * 109.47221 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47148 * 300.00373 * 8 6 4 12 12 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 13 13 C 1.34777 * 119.99828 * 84.72116 * 12 2 1 14 14 O 1.21593 * 119.99949 * 0.28071 * 13 12 2 15 15 N 1.34777 * 120.00128 * 180.27942 * 13 12 2 16 16 C 1.46499 * 120.00065 * 180.02562 * 15 13 12 17 17 C 1.53781 * 113.61523 * 254.13323 * 16 15 13 18 18 C 1.53955 * 87.02027 * 220.04895 * 17 16 15 19 19 C 1.53785 * 113.61183 * 156.52511 * 16 15 13 20 20 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 21 21 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 22 22 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 23 23 H 0.96996 * 120.00441 * 179.97438 * 7 6 4 24 24 H 0.97001 * 120.00384 * 265.00562 * 12 2 1 25 25 H 0.97000 * 119.99549 * 359.97438 * 15 13 12 26 26 H 1.09004 * 112.84999 * 25.33202 * 16 15 13 27 27 H 1.08994 * 113.61404 * 334.56922 * 17 16 15 28 28 H 1.09000 * 113.61184 * 105.46929 * 17 16 15 29 29 H 1.08999 * 113.53826 * 270.81069 * 18 17 16 30 30 H 1.08995 * 113.66411 * 139.93473 * 18 17 16 31 31 H 1.08996 * 113.61568 * 254.52297 * 19 16 15 32 32 H 1.08999 * 113.61279 * 25.35260 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8296 2.6035 8 14 2.3214 -1.1204 4.0079 9 1 3.8064 -1.1211 4.0081 10 1 1.8261 -0.4207 5.2204 11 1 1.8258 -2.5203 4.0076 12 7 2.0184 -0.6906 -1.1962 13 6 2.1417 -0.0196 -2.3585 14 8 1.8526 1.1602 -2.4130 15 7 2.5857 -0.6562 -3.4603 16 6 2.7203 0.0733 -4.7236 17 6 1.6284 -0.2677 -5.7513 18 6 2.7344 -0.2236 -6.8214 19 6 3.7278 -0.5612 -5.6969 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 0.7083 1.1608 3.4844 24 1 2.2490 -1.6318 -1.1527 25 1 2.8167 -1.5973 -3.4167 26 1 2.8663 1.1440 -4.5806 27 1 1.1932 -1.2575 -5.6138 28 1 0.8773 0.5138 -5.8659 29 1 2.8833 0.7661 -7.2530 30 1 2.6455 -1.0061 -7.5749 31 1 4.6690 -0.0161 -5.7678 32 1 3.8686 -1.6311 -5.5436 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127914141.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:40 Heat of formation + Delta-G solvation = -20.671202 kcal Electronic energy + Delta-G solvation = -14088.017707 eV Core-core repulsion = 11662.975316 eV Total energy + Delta-G solvation = -2425.042391 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.62238 -37.93388 -34.69561 -32.92609 -32.03466 -28.60190 -25.63281 -25.20942 -24.56896 -21.23535 -19.92097 -19.45518 -17.92514 -16.43271 -15.89490 -15.15683 -14.87995 -14.36163 -13.96105 -13.22221 -12.79792 -12.50168 -12.28186 -12.26722 -11.63895 -11.29233 -11.02181 -10.93308 -10.70753 -10.57381 -10.38581 -10.24720 -10.17377 -9.27372 -8.98561 -8.59069 -8.48891 -7.72906 -6.07159 -4.15982 3.28527 3.33256 3.34345 3.52434 4.01208 4.37144 4.57361 4.66150 4.88252 5.01479 5.19348 5.25590 5.61649 5.67418 5.75903 5.81136 6.02951 6.07467 6.37121 6.88762 7.01841 7.06580 7.22652 7.39890 7.60862 7.69158 7.94516 8.14210 8.23291 8.82981 9.03460 9.42258 9.57785 10.98955 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.070525 B = 0.006118 C = 0.005858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.928497 B = 4575.195622 C = 4778.405345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.280 3.720 3 H 0.047 0.953 4 C -0.532 4.532 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.727 5.727 13 C 0.694 3.306 14 O -0.602 6.602 15 N -0.748 5.748 16 C 0.146 3.854 17 C -0.156 4.156 18 C -0.140 4.140 19 C -0.149 4.149 20 H 0.089 0.911 21 H 0.014 0.986 22 H 0.024 0.976 23 H 0.264 0.736 24 H 0.383 0.617 25 H 0.390 0.610 26 H 0.111 0.889 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.443 -5.239 -13.522 14.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.178 3.822 3 H 0.065 0.935 4 C -0.571 4.571 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.730 3.270 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.378 5.378 13 C 0.394 3.606 14 O -0.481 6.481 15 N -0.403 5.403 16 C 0.040 3.960 17 C -0.196 4.196 18 C -0.178 4.178 19 C -0.187 4.187 20 H 0.107 0.893 21 H 0.034 0.966 22 H 0.043 0.957 23 H 0.074 0.926 24 H 0.215 0.785 25 H 0.223 0.777 26 H 0.129 0.871 27 H 0.099 0.901 28 H 0.088 0.912 29 H 0.100 0.900 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.071 -3.986 -13.343 14.260 hybrid contribution 0.476 -1.399 0.888 1.724 sum 3.547 -5.385 -12.455 14.025 Atomic orbital electron populations 1.22093 0.98766 0.98935 1.00795 1.18600 0.90719 0.93703 0.79153 0.93495 1.21194 1.32347 1.13157 0.90372 0.92230 1.24883 0.94882 0.94988 0.98992 1.69899 1.35876 1.22481 1.23902 0.86502 0.79117 0.79547 0.81851 1.20229 1.21148 1.20225 1.45806 1.69416 1.13198 1.09419 1.16232 0.78463 0.85398 0.80543 1.90852 1.57740 1.14683 1.84836 1.45221 1.72922 1.13073 1.09115 1.22241 0.95004 0.97909 0.80896 1.23508 0.97597 1.02317 0.96148 1.22704 0.96868 1.01910 0.96274 1.23341 0.98065 1.01308 0.96001 0.89258 0.96648 0.95652 0.92566 0.78482 0.77670 0.87112 0.90074 0.91211 0.90021 0.91261 0.91040 0.89917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.80 9.26 37.16 0.34 -3.46 16 2 C 0.28 7.42 2.56 -69.09 -0.18 7.24 16 3 H 0.05 1.43 7.58 -51.93 -0.39 1.04 16 4 C -0.53 -14.42 8.73 -34.44 -0.30 -14.73 16 5 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -25.36 11.32 55.43 0.63 -24.74 16 8 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 12 N -0.73 -15.86 5.07 -59.82 -0.30 -16.17 16 13 C 0.69 14.80 8.53 -86.92 -0.74 14.06 16 14 O -0.60 -15.47 15.63 5.28 0.08 -15.38 16 15 N -0.75 -11.69 5.37 -57.87 -0.31 -12.00 16 16 C 0.15 2.00 4.21 -67.12 -0.28 1.72 16 17 C -0.16 -1.84 7.89 -25.83 -0.20 -2.04 16 18 C -0.14 -1.29 8.09 -25.82 -0.21 -1.50 16 19 C -0.15 -1.49 7.83 -25.91 -0.20 -1.69 16 20 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 21 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 22 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 24 H 0.38 7.19 8.55 -40.82 -0.35 6.84 16 25 H 0.39 4.90 8.72 -40.82 -0.36 4.54 16 26 H 0.11 1.76 7.50 -51.93 -0.39 1.37 16 27 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.74 8.11 -51.93 -0.42 0.32 16 LS Contribution 270.22 15.07 4.07 4.07 Total: -1.00 -31.61 270.22 -7.45 -39.06 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -4.72 Total: 7.98 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: -1.87 Total: 1.30 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: 0.01 Total: -52.91 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: 0.08 Total: -15.38 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -31.61 -7.45 -39.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127914141.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.388 kcal (2) G-P(sol) polarization free energy of solvation -31.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds