Wall clock time and date at job start Mon Mar 30 2020 02:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 C 1.50696 * 109.47087 * 120.00096 * 2 1 3 5 5 H 1.08003 * 120.00092 * 120.00284 * 4 2 1 6 6 C 1.37879 * 120.00258 * 299.99637 * 4 2 1 7 7 N 1.31512 * 120.00015 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00053 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47344 * 60.00162 * 8 6 4 10 10 H 1.48499 * 109.47221 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47148 * 300.00373 * 8 6 4 12 12 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 13 13 C 1.34777 * 119.99828 * 84.72116 * 12 2 1 14 14 O 1.21593 * 119.99949 * 0.28071 * 13 12 2 15 15 N 1.34777 * 120.00128 * 180.27942 * 13 12 2 16 16 C 1.46499 * 120.00065 * 180.02562 * 15 13 12 17 17 C 1.53781 * 113.61523 * 254.13323 * 16 15 13 18 18 C 1.53955 * 87.02027 * 220.04895 * 17 16 15 19 19 C 1.53785 * 113.61183 * 156.52511 * 16 15 13 20 20 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 21 21 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 22 22 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 23 23 H 0.96996 * 120.00441 * 179.97438 * 7 6 4 24 24 H 0.97001 * 120.00384 * 265.00562 * 12 2 1 25 25 H 0.97000 * 119.99549 * 359.97438 * 15 13 12 26 26 H 1.09004 * 112.84999 * 25.33202 * 16 15 13 27 27 H 1.08994 * 113.61404 * 334.56922 * 17 16 15 28 28 H 1.09000 * 113.61184 * 105.46929 * 17 16 15 29 29 H 1.08999 * 113.53826 * 270.81069 * 18 17 16 30 30 H 1.08995 * 113.66411 * 139.93473 * 18 17 16 31 31 H 1.08996 * 113.61568 * 254.52297 * 19 16 15 32 32 H 1.08999 * 113.61279 * 25.35260 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8296 2.6035 8 14 2.3214 -1.1204 4.0079 9 1 3.8064 -1.1211 4.0081 10 1 1.8261 -0.4207 5.2204 11 1 1.8258 -2.5203 4.0076 12 7 2.0184 -0.6906 -1.1962 13 6 2.1417 -0.0196 -2.3585 14 8 1.8526 1.1602 -2.4130 15 7 2.5857 -0.6562 -3.4603 16 6 2.7203 0.0733 -4.7236 17 6 1.6284 -0.2677 -5.7513 18 6 2.7344 -0.2236 -6.8214 19 6 3.7278 -0.5612 -5.6969 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 0.7083 1.1608 3.4844 24 1 2.2490 -1.6318 -1.1527 25 1 2.8167 -1.5973 -3.4167 26 1 2.8663 1.1440 -4.5806 27 1 1.1932 -1.2575 -5.6138 28 1 0.8773 0.5138 -5.8659 29 1 2.8833 0.7661 -7.2530 30 1 2.6455 -1.0061 -7.5749 31 1 4.6690 -0.0161 -5.7678 32 1 3.8686 -1.6311 -5.5436 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127914141.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:40 Heat of formation + Delta-G solvation = -43.411555 kcal Electronic energy + Delta-G solvation = -14089.003802 eV Core-core repulsion = 11662.975316 eV Total energy + Delta-G solvation = -2426.028486 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.08256 -39.22516 -36.66089 -34.60279 -33.84419 -30.54765 -27.33113 -26.50969 -25.72716 -23.04479 -21.54251 -20.70828 -19.59418 -17.98600 -17.60066 -16.75392 -16.24305 -15.94572 -15.66484 -15.02430 -14.38827 -13.93302 -13.64840 -13.36243 -13.25662 -12.98254 -12.83474 -12.71162 -12.25676 -12.18739 -12.12893 -11.51129 -11.30463 -11.11263 -11.07020 -10.58272 -10.10163 -9.48399 -8.15676 -6.33393 1.46147 1.48922 1.56697 2.01362 2.32389 2.45011 3.14484 3.62062 3.67117 3.79450 4.02195 4.05708 4.68701 4.77529 4.83881 4.86050 4.94546 5.09701 5.10610 5.11816 5.18290 5.38175 5.46356 5.62750 5.70500 5.75598 5.90548 6.12202 6.39628 6.74994 7.35002 7.41308 7.83552 8.90917 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.070525 B = 0.006118 C = 0.005858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.928497 B = 4575.195622 C = 4778.405345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.287 3.713 3 H -0.006 1.006 4 C -0.547 4.547 5 H 0.074 0.926 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.976 3.024 9 H -0.271 1.271 10 H -0.286 1.286 11 H -0.263 1.263 12 N -0.722 5.722 13 C 0.689 3.311 14 O -0.652 6.652 15 N -0.725 5.725 16 C 0.121 3.879 17 C -0.157 4.157 18 C -0.125 4.125 19 C -0.132 4.132 20 H 0.067 0.933 21 H 0.008 0.992 22 H 0.040 0.960 23 H 0.266 0.734 24 H 0.401 0.599 25 H 0.409 0.591 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.054 0.946 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.497 -7.604 -14.367 16.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.183 3.817 3 H 0.012 0.988 4 C -0.585 4.585 5 H 0.092 0.908 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.801 3.199 9 H -0.196 1.196 10 H -0.212 1.212 11 H -0.188 1.188 12 N -0.375 5.375 13 C 0.389 3.611 14 O -0.535 6.535 15 N -0.380 5.380 16 C 0.016 3.984 17 C -0.196 4.196 18 C -0.162 4.162 19 C -0.170 4.170 20 H 0.085 0.915 21 H 0.027 0.973 22 H 0.059 0.941 23 H 0.075 0.925 24 H 0.236 0.764 25 H 0.246 0.754 26 H 0.099 0.901 27 H 0.108 0.892 28 H 0.073 0.927 29 H 0.105 0.895 30 H 0.111 0.889 31 H 0.097 0.903 32 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 4.154 -6.418 -14.250 16.171 hybrid contribution 0.145 -0.621 1.076 1.251 sum 4.299 -7.039 -13.175 15.544 Atomic orbital electron populations 1.21909 0.98571 0.99329 0.99350 1.18200 0.90833 0.91539 0.81111 0.98783 1.21506 1.32665 1.13602 0.90706 0.90829 1.25836 0.94863 0.95602 1.02385 1.70057 1.36965 1.23995 1.24690 0.85339 0.78584 0.78657 0.77366 1.19589 1.21157 1.18794 1.45423 1.69618 1.13858 1.08595 1.16439 0.78343 0.84844 0.81447 1.90818 1.59839 1.17110 1.85712 1.45041 1.71072 1.13887 1.08049 1.22589 0.98502 0.96788 0.80563 1.23522 0.97486 1.02190 0.96401 1.22670 0.94549 1.03118 0.95909 1.23310 0.97526 1.02186 0.93980 0.91461 0.97268 0.94110 0.92525 0.76409 0.75423 0.90109 0.89202 0.92688 0.89513 0.88871 0.90318 0.87908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.01 9.26 71.98 0.67 -6.35 16 2 C 0.29 15.55 2.56 44.24 0.11 15.66 16 3 H -0.01 -0.37 7.58 -2.39 -0.02 -0.39 16 4 C -0.55 -29.55 8.73 25.60 0.22 -29.32 16 5 H 0.07 3.68 7.74 -2.91 -0.02 3.66 16 6 C 0.01 0.71 5.30 84.66 0.45 1.16 16 7 N -0.92 -53.68 11.32 21.45 0.24 -53.44 16 8 Si 0.98 42.34 29.54 68.60 2.03 44.37 16 9 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 10 H -0.29 -12.31 7.11 99.48 0.71 -11.61 16 11 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 12 N -0.72 -31.53 5.07 -461.42 -2.34 -33.87 16 13 C 0.69 29.74 8.53 179.05 1.53 31.27 16 14 O -0.65 -34.88 15.63 -4.01 -0.06 -34.95 16 15 N -0.72 -21.91 5.37 -455.28 -2.44 -24.35 16 16 C 0.12 3.22 4.21 45.52 0.19 3.41 16 17 C -0.16 -3.44 7.89 31.18 0.25 -3.20 16 18 C -0.12 -1.92 8.09 31.18 0.25 -1.67 16 19 C -0.13 -2.24 7.83 31.12 0.24 -2.00 16 20 H 0.07 3.85 6.07 -2.39 -0.01 3.84 16 21 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 22 H 0.04 1.96 8.14 -2.39 -0.02 1.95 16 23 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 24 H 0.40 14.50 8.55 -92.71 -0.79 13.71 16 25 H 0.41 9.27 8.72 -92.71 -0.81 8.47 16 26 H 0.08 2.65 7.50 -2.38 -0.02 2.63 16 27 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.10 1.39 8.11 -2.39 -0.02 1.37 16 Total: -1.00 -70.30 270.22 0.85 -69.45 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: -0.48 Total: 23.83 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: 3.91 Total: 8.96 kcal Atomic # 7 Polarization: -107.12 SS G_CDS: -4.54 Total: -111.66 kcal Atomic # 8 Polarization: -34.88 SS G_CDS: -0.06 Total: -34.95 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -70.30 0.85 -69.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127914141.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.038 kcal (2) G-P(sol) polarization free energy of solvation -70.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds