Wall clock time and date at job start Mon Mar 30 2020 03:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46758 * 2 1 4 4 C 1.53005 * 109.46716 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46716 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.46927 * 180.02562 * 5 4 3 7 7 H 1.09000 * 110.32903 * 304.20161 * 6 5 4 8 8 C 1.54485 * 110.37142 * 181.83496 * 6 5 4 9 9 C 1.54507 * 104.06070 * 217.18662 * 8 6 5 10 10 C 1.54480 * 104.06663 * 359.97438 * 9 8 6 11 11 H 1.08997 * 110.46654 * 265.10532 * 10 9 8 12 12 C 1.50694 * 110.37228 * 142.80965 * 10 9 8 13 13 H 1.08000 * 120.00563 * 3.16730 * 12 10 9 14 14 C 1.37885 * 119.99902 * 183.16894 * 12 10 9 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47353 * 269.99586 * 16 14 12 18 18 H 1.48501 * 109.47293 * 30.00037 * 16 14 12 19 19 H 1.48504 * 109.46680 * 149.99835 * 16 14 12 20 20 O 1.44420 * 110.37640 * 66.45300 * 6 5 4 21 21 H 1.08995 * 109.47585 * 299.99658 * 1 2 3 22 22 H 1.09001 * 109.47559 * 60.00596 * 1 2 3 23 23 H 1.09011 * 109.46977 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47463 * 240.00043 * 2 1 3 25 25 H 1.08996 * 109.47171 * 119.99995 * 2 1 3 26 26 H 1.09002 * 109.47233 * 60.00356 * 3 2 1 27 27 H 1.08996 * 109.47276 * 299.99931 * 3 2 1 28 28 H 1.09002 * 109.46875 * 60.00264 * 4 3 2 29 29 H 1.08996 * 109.47296 * 300.00046 * 4 3 2 30 30 H 1.08997 * 109.47505 * 59.99798 * 5 4 3 31 31 H 1.09003 * 109.47432 * 299.99748 * 5 4 3 32 32 H 1.08996 * 110.50781 * 335.83369 * 8 6 5 33 33 H 1.09005 * 110.50976 * 98.40533 * 8 6 5 34 34 H 1.09005 * 110.51114 * 241.35797 * 9 8 6 35 35 H 1.08995 * 110.51057 * 118.64527 * 9 8 6 36 36 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4425 0.0006 5 6 4.0798 2.8851 0.0013 6 6 5.6098 2.8851 0.0013 7 1 5.9885 2.3102 0.8464 8 6 6.1476 4.3326 0.0483 9 6 7.3976 4.2984 -0.8592 10 6 7.4677 2.8341 -1.3466 11 1 8.1332 2.2518 -0.7095 12 6 7.9334 2.7797 -2.7787 13 1 8.2113 3.6889 -3.2912 14 6 8.0047 1.5691 -3.4350 15 7 7.6667 0.4619 -2.8108 16 14 8.5813 1.5018 -5.2104 17 1 7.4129 1.6419 -6.1161 18 1 9.5385 2.6089 -5.4624 19 1 9.2512 0.2009 -5.4643 20 8 6.1127 2.3448 -1.2401 21 1 -0.3634 0.5137 0.8899 22 1 -0.3634 0.5137 -0.8900 23 1 -0.3633 -1.0278 0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 1.6766 1.9564 0.8900 27 1 1.6765 1.9564 -0.8899 28 1 3.9336 0.9286 -0.8892 29 1 3.9329 0.9289 0.8908 30 1 3.7161 3.3987 0.8912 31 1 3.7169 3.3992 -0.8887 32 1 5.4073 5.0280 -0.3473 33 1 6.4204 4.6058 1.0677 34 1 8.2907 4.5537 -0.2888 35 1 7.2754 4.9769 -1.7034 36 1 7.7166 -0.3896 -3.2726 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000165419548.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:32 Heat of formation + Delta-G solvation = -85.604136 kcal Electronic energy + Delta-G solvation = -14374.897871 eV Core-core repulsion = 12050.580120 eV Total energy + Delta-G solvation = -2324.317751 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.19805 -35.78261 -32.92177 -31.83986 -30.74902 -28.62705 -26.12959 -23.75765 -21.68897 -20.70766 -20.16956 -19.62489 -16.60226 -15.64137 -15.09736 -14.50974 -14.25627 -13.97700 -13.35679 -13.13653 -13.04416 -12.44166 -12.06206 -11.72845 -11.56220 -11.35134 -11.05872 -10.89449 -10.64498 -10.63135 -10.53453 -10.32637 -10.05248 -9.94732 -9.62356 -9.52089 -9.02533 -8.54766 -7.99464 -5.97082 -4.09220 3.33605 3.39643 3.42353 4.45408 4.95789 5.07613 5.12231 5.27061 5.47566 5.51580 5.57138 5.68451 5.80301 5.85649 5.91424 5.93519 6.01759 6.16187 6.18124 6.25058 6.31600 6.41735 6.46067 6.53060 6.70775 6.75824 6.78239 6.87676 6.98143 7.00430 7.56991 7.92663 8.28561 8.61228 9.02877 9.60725 11.10819 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.026779 B = 0.007734 C = 0.006303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.332748 B = 3619.412606 C = 4441.480330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.118 4.118 4 C -0.117 4.117 5 C -0.105 4.105 6 C 0.063 3.937 7 H 0.045 0.955 8 C -0.150 4.150 9 C -0.147 4.147 10 C 0.205 3.795 11 H 0.023 0.977 12 C -0.530 4.530 13 H 0.063 0.937 14 C 0.076 3.924 15 N -0.863 5.863 16 Si 0.891 3.109 17 H -0.279 1.279 18 H -0.273 1.273 19 H -0.286 1.286 20 O -0.345 6.345 21 H 0.050 0.950 22 H 0.052 0.948 23 H 0.049 0.951 24 H 0.063 0.937 25 H 0.059 0.941 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.076 0.924 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.062 0.938 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.113 2.183 6.305 11.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C -0.155 4.155 4 C -0.154 4.154 5 C -0.143 4.143 6 C 0.004 3.996 7 H 0.063 0.937 8 C -0.188 4.188 9 C -0.185 4.185 10 C 0.149 3.851 11 H 0.040 0.960 12 C -0.568 4.568 13 H 0.081 0.919 14 C -0.129 4.129 15 N -0.500 5.500 16 Si 0.719 3.281 17 H -0.205 1.205 18 H -0.198 1.198 19 H -0.211 1.211 20 O -0.264 6.264 21 H 0.069 0.931 22 H 0.071 0.929 23 H 0.069 0.931 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.095 0.905 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.237 1.846 6.139 11.244 hybrid contribution 0.396 0.062 -0.749 0.849 sum -8.841 1.908 5.391 10.529 Atomic orbital electron populations 1.21781 0.96448 1.01141 1.01476 1.21545 0.95186 0.97529 1.02144 1.21626 0.96425 0.96161 1.01305 1.21531 0.93842 0.97173 1.02864 1.21566 0.94722 0.96914 1.01070 1.22775 0.93399 0.92327 0.91128 0.93671 1.22958 0.98558 0.98187 0.99088 1.23034 0.95665 1.01673 0.98121 1.20490 0.81464 0.86566 0.96535 0.95956 1.21048 1.45131 0.93284 0.97291 0.91919 1.25079 0.94089 0.95734 0.98005 1.70045 1.45523 0.97930 1.36483 0.86626 0.78873 0.77421 0.85227 1.20509 1.19774 1.21140 1.89495 1.29725 1.72144 1.35038 0.93087 0.92898 0.93138 0.91836 0.92266 0.92756 0.92292 0.90518 0.92719 0.92467 0.91805 0.92120 0.92639 0.92967 0.91900 0.93015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.91 37.16 0.37 -1.22 16 2 C -0.13 -1.59 5.93 -26.73 -0.16 -1.75 16 3 C -0.12 -1.60 5.21 -26.73 -0.14 -1.74 16 4 C -0.12 -1.95 5.13 -26.73 -0.14 -2.09 16 5 C -0.11 -1.82 4.85 -26.73 -0.13 -1.95 16 6 C 0.06 1.30 3.27 -25.95 -0.08 1.22 16 7 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 8 C -0.15 -2.82 6.63 -25.16 -0.17 -2.99 16 9 C -0.15 -3.20 6.61 -25.16 -0.17 -3.36 16 10 C 0.21 5.48 3.11 -27.11 -0.08 5.40 16 11 H 0.02 0.65 8.14 -51.93 -0.42 0.22 16 12 C -0.53 -15.29 8.78 -34.44 -0.30 -15.59 16 13 H 0.06 1.75 7.59 -52.49 -0.40 1.35 16 14 C 0.08 2.21 5.42 -17.82 -0.10 2.12 16 15 N -0.86 -26.09 12.94 55.43 0.72 -25.38 16 16 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 O -0.34 -9.16 10.22 -35.23 -0.36 -9.52 16 21 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16 24 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.08 1.54 7.91 -51.93 -0.41 1.13 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.06 1.06 7.87 -51.93 -0.41 0.65 16 33 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.06 1.37 7.73 -51.93 -0.40 0.97 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 292.29 15.07 4.40 4.40 Total: -1.00 -30.42 292.29 -8.03 -38.45 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -6.67 Total: -2.70 kcal Atomic # 6 Polarization: -20.87 SS G_CDS: -1.10 Total: -21.97 kcal Atomic # 7 Polarization: -26.09 SS G_CDS: 0.72 Total: -25.38 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: -0.36 Total: -9.52 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.42 -8.03 -38.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165419548.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.158 kcal (2) G-P(sol) polarization free energy of solvation -30.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds