Wall clock time and date at job start Mon Mar 30 2020 03:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46758 * 2 1 4 4 C 1.53005 * 109.46716 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46716 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.46927 * 180.02562 * 5 4 3 7 7 H 1.09000 * 110.32903 * 304.20161 * 6 5 4 8 8 C 1.54485 * 110.37142 * 181.83496 * 6 5 4 9 9 C 1.54507 * 104.06070 * 217.18662 * 8 6 5 10 10 C 1.54480 * 104.06663 * 359.97438 * 9 8 6 11 11 H 1.08997 * 110.46654 * 265.10532 * 10 9 8 12 12 C 1.50694 * 110.37228 * 142.80965 * 10 9 8 13 13 H 1.08000 * 120.00563 * 3.16730 * 12 10 9 14 14 C 1.37885 * 119.99902 * 183.16894 * 12 10 9 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47353 * 269.99586 * 16 14 12 18 18 H 1.48501 * 109.47293 * 30.00037 * 16 14 12 19 19 H 1.48504 * 109.46680 * 149.99835 * 16 14 12 20 20 O 1.44420 * 110.37640 * 66.45300 * 6 5 4 21 21 H 1.08995 * 109.47585 * 299.99658 * 1 2 3 22 22 H 1.09001 * 109.47559 * 60.00596 * 1 2 3 23 23 H 1.09011 * 109.46977 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47463 * 240.00043 * 2 1 3 25 25 H 1.08996 * 109.47171 * 119.99995 * 2 1 3 26 26 H 1.09002 * 109.47233 * 60.00356 * 3 2 1 27 27 H 1.08996 * 109.47276 * 299.99931 * 3 2 1 28 28 H 1.09002 * 109.46875 * 60.00264 * 4 3 2 29 29 H 1.08996 * 109.47296 * 300.00046 * 4 3 2 30 30 H 1.08997 * 109.47505 * 59.99798 * 5 4 3 31 31 H 1.09003 * 109.47432 * 299.99748 * 5 4 3 32 32 H 1.08996 * 110.50781 * 335.83369 * 8 6 5 33 33 H 1.09005 * 110.50976 * 98.40533 * 8 6 5 34 34 H 1.09005 * 110.51114 * 241.35797 * 9 8 6 35 35 H 1.08995 * 110.51057 * 118.64527 * 9 8 6 36 36 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4425 0.0006 5 6 4.0798 2.8851 0.0013 6 6 5.6098 2.8851 0.0013 7 1 5.9885 2.3102 0.8464 8 6 6.1476 4.3326 0.0483 9 6 7.3976 4.2984 -0.8592 10 6 7.4677 2.8341 -1.3466 11 1 8.1332 2.2518 -0.7095 12 6 7.9334 2.7797 -2.7787 13 1 8.2113 3.6889 -3.2912 14 6 8.0047 1.5691 -3.4350 15 7 7.6667 0.4619 -2.8108 16 14 8.5813 1.5018 -5.2104 17 1 7.4129 1.6419 -6.1161 18 1 9.5385 2.6089 -5.4624 19 1 9.2512 0.2009 -5.4643 20 8 6.1127 2.3448 -1.2401 21 1 -0.3634 0.5137 0.8899 22 1 -0.3634 0.5137 -0.8900 23 1 -0.3633 -1.0278 0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 1.6766 1.9564 0.8900 27 1 1.6765 1.9564 -0.8899 28 1 3.9336 0.9286 -0.8892 29 1 3.9329 0.9289 0.8908 30 1 3.7161 3.3987 0.8912 31 1 3.7169 3.3992 -0.8887 32 1 5.4073 5.0280 -0.3473 33 1 6.4204 4.6058 1.0677 34 1 8.2907 4.5537 -0.2888 35 1 7.2754 4.9769 -1.7034 36 1 7.7166 -0.3896 -3.2726 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000165419548.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:32 Heat of formation + Delta-G solvation = -102.998561 kcal Electronic energy + Delta-G solvation = -14375.652150 eV Core-core repulsion = 12050.580120 eV Total energy + Delta-G solvation = -2325.072029 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.97601 -37.01130 -34.84794 -33.38561 -32.53470 -30.23481 -27.78115 -25.41066 -23.17516 -22.02438 -21.74727 -21.24560 -18.74302 -17.08755 -16.73114 -16.39019 -15.90830 -15.58695 -14.61711 -14.45062 -14.40302 -14.10032 -13.81083 -13.40970 -12.87394 -12.75590 -12.62906 -12.39610 -12.35610 -12.12755 -11.91568 -11.76244 -11.69505 -11.34960 -11.31360 -11.01645 -10.96358 -10.70600 -10.00132 -8.16369 -6.36901 1.39091 1.41227 1.51747 2.39830 3.06322 3.66323 3.75844 4.03779 4.09961 4.18826 4.24320 4.33251 4.39039 4.53375 4.61757 4.65982 4.82415 4.86182 4.94927 4.96581 5.03565 5.06379 5.08043 5.21093 5.25754 5.29055 5.37599 5.43338 5.49946 5.54492 5.60596 5.73074 6.16286 6.55890 6.95276 7.38266 8.92217 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.026779 B = 0.007734 C = 0.006303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.332748 B = 3619.412606 C = 4441.480330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.129 4.129 3 C -0.110 4.110 4 C -0.114 4.114 5 C -0.098 4.098 6 C 0.049 3.951 7 H 0.041 0.959 8 C -0.138 4.138 9 C -0.141 4.141 10 C 0.194 3.806 11 H -0.013 1.013 12 C -0.554 4.554 13 H 0.065 0.935 14 C 0.020 3.980 15 N -0.903 5.903 16 Si 0.964 3.036 17 H -0.276 1.276 18 H -0.260 1.260 19 H -0.279 1.279 20 O -0.381 6.381 21 H 0.063 0.937 22 H 0.053 0.947 23 H 0.058 0.942 24 H 0.044 0.956 25 H 0.062 0.938 26 H 0.078 0.922 27 H 0.056 0.944 28 H 0.030 0.970 29 H 0.056 0.944 30 H 0.096 0.904 31 H 0.056 0.944 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.221 3.533 6.773 12.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.167 4.167 3 C -0.147 4.147 4 C -0.151 4.151 5 C -0.135 4.135 6 C -0.009 4.009 7 H 0.059 0.941 8 C -0.176 4.176 9 C -0.179 4.179 10 C 0.138 3.862 11 H 0.005 0.995 12 C -0.592 4.592 13 H 0.084 0.916 14 C -0.182 4.182 15 N -0.540 5.540 16 Si 0.788 3.212 17 H -0.201 1.201 18 H -0.184 1.184 19 H -0.205 1.205 20 O -0.301 6.301 21 H 0.082 0.918 22 H 0.072 0.928 23 H 0.077 0.923 24 H 0.063 0.937 25 H 0.080 0.920 26 H 0.096 0.904 27 H 0.075 0.925 28 H 0.049 0.951 29 H 0.075 0.925 30 H 0.114 0.886 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.107 0.893 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.345 3.213 6.616 12.693 hybrid contribution 0.750 -0.375 -0.819 1.172 sum -9.596 2.839 5.796 11.565 Atomic orbital electron populations 1.21744 0.94471 1.02023 1.02175 1.21556 0.96928 0.96720 1.01450 1.21565 0.93728 0.97112 1.02308 1.21472 0.96312 0.96636 1.00707 1.21565 0.92132 0.97322 1.02505 1.23128 0.95678 0.93368 0.88748 0.94124 1.22921 0.97277 0.96972 1.00383 1.22923 0.98161 0.97962 0.98885 1.20418 0.81291 0.89237 0.95235 0.99504 1.21492 1.45425 0.93625 0.98622 0.91649 1.26005 0.94115 0.95267 1.02791 1.70193 1.46874 0.98506 1.38465 0.85490 0.78564 0.77923 0.79238 1.20138 1.18386 1.20467 1.89415 1.29354 1.73392 1.37957 0.91751 0.92801 0.92254 0.93684 0.91954 0.90364 0.92493 0.95057 0.92538 0.88569 0.92509 0.90302 0.89332 0.91250 0.92140 0.93004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 9.91 71.98 0.71 -2.08 16 2 C -0.13 -3.12 5.93 30.59 0.18 -2.94 16 3 C -0.11 -2.83 5.21 30.60 0.16 -2.67 16 4 C -0.11 -3.80 5.13 30.60 0.16 -3.64 16 5 C -0.10 -3.24 4.85 30.59 0.15 -3.09 16 6 C 0.05 2.01 3.27 31.10 0.10 2.11 16 7 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 8 C -0.14 -4.86 6.63 31.61 0.21 -4.65 16 9 C -0.14 -6.03 6.61 31.61 0.21 -5.82 16 10 C 0.19 10.66 3.11 30.35 0.09 10.75 16 11 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 12 C -0.55 -32.67 8.78 25.60 0.22 -32.44 16 13 H 0.07 3.69 7.59 -2.91 -0.02 3.67 16 14 C 0.02 1.18 5.42 84.66 0.46 1.64 16 15 N -0.90 -56.47 12.94 21.45 0.28 -56.19 16 16 Si 0.96 45.26 29.54 68.60 2.03 47.28 16 17 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 18 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 19 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 20 O -0.38 -20.87 10.22 -148.98 -1.52 -22.40 16 21 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 22 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 23 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 24 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.08 1.67 8.14 -2.39 -0.02 1.66 16 27 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.03 1.31 7.91 -2.39 -0.02 1.29 16 29 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 31 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.08 2.50 7.87 -2.39 -0.02 2.48 16 33 H 0.09 2.55 8.14 -2.38 -0.02 2.53 16 34 H 0.07 2.66 8.14 -2.38 -0.02 2.64 16 35 H 0.06 2.57 7.73 -2.39 -0.02 2.56 16 36 H 0.26 15.36 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -67.79 292.29 4.44 -63.35 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: 1.00 Total: 10.78 kcal Atomic # 6 Polarization: -45.49 SS G_CDS: 2.66 Total: -42.83 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: 0.28 Total: -56.19 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -1.52 Total: -22.40 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.28 kcal Total: -67.79 4.44 -63.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165419548.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.647 kcal (2) G-P(sol) polarization free energy of solvation -67.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds