Wall clock time and date at job start Mon Mar 30 2020 02:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47328 * 2 1 4 4 C 1.50703 * 109.47198 * 120.00027 * 2 1 3 5 5 H 1.07996 * 120.00030 * 119.99758 * 4 2 1 6 6 C 1.37873 * 119.99799 * 299.99945 * 4 2 1 7 7 N 1.31510 * 120.00006 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99960 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47042 * 89.99931 * 8 6 4 10 10 H 1.48492 * 109.47446 * 210.00140 * 8 6 4 11 11 H 1.48497 * 109.47119 * 330.00408 * 8 6 4 12 12 N 1.46502 * 109.47277 * 240.00163 * 2 1 3 13 13 C 1.34778 * 119.99945 * 84.99708 * 12 2 1 14 14 O 1.21273 * 120.00133 * 5.01212 * 13 12 2 15 15 C 1.50703 * 119.99694 * 185.00741 * 13 12 2 16 16 C 1.52995 * 115.55478 * 294.55949 * 15 13 12 17 17 N 1.46897 * 109.47347 * 294.91588 * 16 15 13 18 18 C 1.53003 * 117.49491 * 148.88947 * 15 13 12 19 19 C 1.53001 * 117.49654 * 80.23088 * 15 13 12 20 20 H 1.09006 * 109.46957 * 59.99764 * 1 2 3 21 21 H 1.08997 * 109.47328 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47268 * 300.00156 * 1 2 3 23 23 H 0.97000 * 120.00021 * 179.97438 * 7 6 4 24 24 H 0.97001 * 119.99672 * 265.00330 * 12 2 1 25 25 H 1.08999 * 109.47013 * 54.91101 * 16 15 13 26 26 H 1.08999 * 109.47378 * 174.91117 * 16 15 13 27 27 H 1.00900 * 111.00549 * 174.81889 * 17 16 15 28 28 H 1.00908 * 110.99940 * 298.76873 * 17 16 15 29 29 H 1.09004 * 117.50004 * 359.97438 * 18 15 13 30 30 H 1.08995 * 117.49602 * 145.02392 * 18 15 13 31 31 H 1.09003 * 117.49903 * 214.97738 * 19 15 13 32 32 H 1.09005 * 117.49789 * 359.97438 * 19 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9427 0.8296 2.6033 8 14 2.3213 -1.1203 4.0079 9 1 3.6297 -0.5459 4.4123 10 1 1.3431 -0.9493 5.1120 11 1 2.4859 -2.5662 3.7119 12 7 2.0183 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 8 1.9460 1.1773 -2.3910 15 6 2.5408 -0.7520 -3.6132 16 6 3.9472 -1.3542 -3.6123 17 7 4.9420 -0.2750 -3.5529 18 6 2.0018 -0.2177 -4.9418 19 6 1.4448 -1.5180 -4.3568 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 0.7081 1.1608 3.4843 24 1 2.2490 -1.6318 -1.1526 25 1 4.0637 -2.0038 -2.7449 26 1 4.0946 -1.9345 -4.5232 27 1 5.8755 -0.6479 -3.4662 28 1 4.8677 0.3300 -4.3571 29 1 1.3622 0.6642 -4.9073 30 1 2.6492 -0.2957 -5.8152 31 1 1.7258 -2.4508 -4.8457 32 1 0.4390 -1.4916 -3.9373 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168721643.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:55 Heat of formation + Delta-G solvation = -20.869526 kcal Electronic energy + Delta-G solvation = -14372.481569 eV Core-core repulsion = 11947.430579 eV Total energy + Delta-G solvation = -2425.050991 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.42861 -36.65239 -34.59997 -33.22643 -32.21604 -28.90385 -25.65990 -25.19059 -22.89459 -22.31872 -20.21081 -18.80339 -17.09210 -16.03863 -15.49113 -15.22372 -14.52842 -14.51768 -14.11836 -13.40008 -13.25797 -12.58949 -12.32346 -11.83318 -11.60604 -11.46039 -11.03283 -10.93594 -10.69946 -10.38020 -10.25083 -10.17716 -9.94753 -8.97328 -8.93182 -8.52876 -8.46465 -7.75480 -6.05795 -4.14196 3.28733 3.34778 3.36630 3.43059 3.84314 4.18035 4.43539 4.53955 4.88527 5.01537 5.22678 5.27328 5.38205 5.58999 5.66733 5.79902 5.97238 6.11378 6.24856 6.88462 7.01768 7.17444 7.22096 7.51368 7.58154 7.67250 7.78485 8.00566 8.22613 8.80874 8.88698 9.29737 9.53849 11.00433 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.042190 B = 0.008045 C = 0.007440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.504100 B = 3479.777607 C = 3762.682676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.264 3.736 3 H 0.049 0.951 4 C -0.529 4.529 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.885 5.885 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.704 5.704 13 C 0.551 3.449 14 O -0.552 6.552 15 C -0.153 4.153 16 C 0.108 3.892 17 N -0.842 5.842 18 C -0.150 4.150 19 C -0.160 4.160 20 H 0.012 0.988 21 H 0.026 0.974 22 H 0.090 0.910 23 H 0.263 0.737 24 H 0.386 0.614 25 H 0.079 0.921 26 H 0.030 0.970 27 H 0.341 0.659 28 H 0.341 0.659 29 H 0.103 0.897 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.647 -6.594 -12.019 14.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.067 0.933 4 C -0.568 4.568 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.523 5.523 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.351 5.351 13 C 0.335 3.665 14 O -0.431 6.431 15 C -0.157 4.157 16 C -0.023 4.023 17 N -0.372 5.372 18 C -0.187 4.187 19 C -0.198 4.198 20 H 0.031 0.969 21 H 0.045 0.955 22 H 0.109 0.891 23 H 0.073 0.927 24 H 0.218 0.782 25 H 0.098 0.902 26 H 0.048 0.952 27 H 0.154 0.846 28 H 0.154 0.846 29 H 0.121 0.879 30 H 0.112 0.888 31 H 0.116 0.884 32 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.016 -5.390 -11.177 12.770 hybrid contribution 0.811 -1.357 0.023 1.581 sum 3.827 -6.747 -11.154 13.586 Atomic orbital electron populations 1.22084 0.98656 0.99002 1.00738 1.18715 0.90742 0.94176 0.80153 0.93341 1.21219 1.32119 1.13068 0.90360 0.92163 1.24888 0.94888 0.95001 0.99018 1.69905 1.36021 1.22583 1.23750 0.86456 0.78596 0.79811 0.82265 1.20582 1.21123 1.19907 1.46364 1.65077 1.13395 1.10280 1.19048 0.76959 0.86872 0.83596 1.90622 1.51933 1.14709 1.85792 1.21608 0.95452 1.04661 0.93936 1.21159 0.88713 0.92165 1.00274 1.58425 1.07362 1.21880 1.49541 1.22900 1.03189 0.98033 0.94588 1.23038 0.98029 0.95965 1.02781 0.96936 0.95507 0.89140 0.92659 0.78176 0.90217 0.95205 0.84642 0.84616 0.87866 0.88814 0.88357 0.88187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.75 9.26 37.16 0.34 -3.41 16 2 C 0.26 7.02 2.60 -69.08 -0.18 6.84 16 3 H 0.05 1.50 7.51 -51.93 -0.39 1.11 16 4 C -0.53 -14.50 8.73 -34.44 -0.30 -14.80 16 5 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 6 C 0.06 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -25.57 11.32 55.43 0.63 -24.94 16 8 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 9 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 12 N -0.70 -15.57 5.07 -54.93 -0.28 -15.85 16 13 C 0.55 11.78 6.95 -10.98 -0.08 11.70 16 14 O -0.55 -14.20 16.33 5.56 0.09 -14.11 16 15 C -0.15 -2.36 2.10 -155.66 -0.33 -2.69 16 16 C 0.11 1.40 6.60 -3.83 -0.03 1.37 16 17 N -0.84 -11.21 9.50 -10.37 -0.10 -11.31 16 18 C -0.15 -2.00 9.78 -26.69 -0.26 -2.26 16 19 C -0.16 -2.02 9.93 -26.69 -0.26 -2.29 16 20 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 21 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.09 2.51 6.07 -51.93 -0.32 2.19 16 23 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 24 H 0.39 7.53 8.54 -40.82 -0.35 7.18 16 25 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 26 H 0.03 0.31 8.09 -51.93 -0.42 -0.11 16 27 H 0.34 3.63 9.08 -39.29 -0.36 3.28 16 28 H 0.34 4.15 9.05 -39.29 -0.36 3.79 16 29 H 0.10 1.56 7.99 -51.93 -0.42 1.15 16 30 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 LS Contribution 275.56 15.07 4.15 4.15 Total: -1.00 -32.27 275.56 -6.39 -38.66 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -4.68 Total: 11.14 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: -1.19 Total: -3.84 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: 0.25 Total: -52.11 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: 0.09 Total: -14.11 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -32.27 -6.39 -38.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168721643.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.794 kcal (2) G-P(sol) polarization free energy of solvation -32.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds