Wall clock time and date at job start Mon Mar 30 2020 02:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47246 * 2 1 4 4 C 1.50699 * 109.47440 * 239.99917 * 2 1 3 5 5 H 1.07996 * 120.00058 * 240.00287 * 4 2 1 6 6 C 1.37878 * 119.99965 * 59.99528 * 4 2 1 7 7 N 1.31506 * 120.00079 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99795 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47051 * 90.00325 * 8 6 4 10 10 H 1.48500 * 109.46821 * 210.00382 * 8 6 4 11 11 H 1.48505 * 109.47314 * 330.00267 * 8 6 4 12 12 N 1.46496 * 109.47202 * 119.99330 * 2 1 3 13 13 C 1.34774 * 120.00502 * 275.00389 * 12 2 1 14 14 O 1.21285 * 119.99857 * 354.68073 * 13 12 2 15 15 C 1.50699 * 120.00173 * 174.67695 * 13 12 2 16 16 C 1.52995 * 115.54991 * 90.20564 * 15 13 12 17 17 N 1.46891 * 109.47204 * 30.58694 * 16 15 13 18 18 C 1.53001 * 117.49747 * 304.53257 * 15 13 12 19 19 C 1.53000 * 60.03402 * 252.47538 * 18 15 13 20 20 H 1.09003 * 109.47246 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47345 * 300.00511 * 1 2 3 22 22 H 1.09004 * 109.47157 * 60.00577 * 1 2 3 23 23 H 0.97002 * 120.00127 * 179.97438 * 7 6 4 24 24 H 0.97007 * 119.99874 * 94.99991 * 12 2 1 25 25 H 1.09003 * 109.47018 * 150.58588 * 16 15 13 26 26 H 1.08998 * 109.46723 * 270.58077 * 16 15 13 27 27 H 1.00907 * 111.00298 * 61.46582 * 17 16 15 28 28 H 1.00905 * 111.00364 * 185.42084 * 17 16 15 29 29 H 1.09005 * 117.50196 * 359.97438 * 18 15 13 30 30 H 1.09003 * 117.49611 * 144.97522 * 18 15 13 31 31 H 1.09002 * 117.49719 * 107.49933 * 19 18 15 32 32 H 1.09002 * 117.50163 * 252.52101 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8300 -2.6034 8 14 2.3215 -1.1205 -4.0079 9 1 1.3429 -2.1618 -4.4118 10 1 2.4867 -0.1415 -5.1122 11 1 3.6295 -1.7584 -3.7121 12 7 2.0183 -0.6904 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.9514 1.1784 2.3898 15 6 2.5338 -0.7530 3.6147 16 6 4.0360 -0.8451 3.8895 17 7 4.7081 0.3394 3.3391 18 6 1.6645 -1.9398 4.0350 19 6 1.6007 -0.6293 4.8219 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3634 0.5138 -0.8901 23 1 0.7094 1.1616 -3.4845 24 1 2.2490 -1.6317 1.1527 25 1 4.2063 -0.8925 4.9651 26 1 4.4372 -1.7424 3.4183 27 1 4.3703 1.1832 3.7775 28 1 5.7100 0.2613 3.4292 29 1 0.8126 -2.1889 3.4022 30 1 2.1630 -2.7865 4.5070 31 1 0.7069 -0.0161 4.7068 32 1 2.0576 -0.6136 5.8115 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168721711.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:58 Heat of formation + Delta-G solvation = -19.963349 kcal Electronic energy + Delta-G solvation = -14420.227750 eV Core-core repulsion = 11995.216054 eV Total energy + Delta-G solvation = -2425.011696 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.39059 -36.57236 -34.54976 -33.31614 -32.16289 -28.80988 -25.50037 -25.17335 -22.97275 -22.35284 -20.19281 -18.78385 -16.87833 -15.95186 -15.66897 -15.15245 -14.58352 -14.50752 -13.87787 -13.31101 -13.18109 -12.68870 -12.28406 -11.88691 -11.60826 -11.43186 -11.04410 -10.88232 -10.67338 -10.44399 -10.22583 -10.16979 -9.87813 -8.93922 -8.83140 -8.48952 -8.43657 -7.70957 -6.03917 -4.11897 3.29417 3.35947 3.38927 3.61084 3.71386 4.21773 4.44904 4.52884 4.92277 5.03620 5.25454 5.29929 5.48635 5.61090 5.66743 5.72893 5.96867 6.13347 6.19821 6.89884 7.03213 7.24046 7.26563 7.60133 7.62443 7.70873 7.81214 8.03369 8.24919 8.84844 8.92166 9.34336 9.56411 11.02317 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.041800 B = 0.008083 C = 0.007695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.693598 B = 3463.250644 C = 3637.788465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.265 3.735 3 H 0.049 0.951 4 C -0.528 4.528 5 H 0.060 0.940 6 C 0.064 3.936 7 N -0.885 5.885 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.704 5.704 13 C 0.559 3.441 14 O -0.553 6.553 15 C -0.154 4.154 16 C 0.112 3.888 17 N -0.842 5.842 18 C -0.165 4.165 19 C -0.154 4.154 20 H 0.025 0.975 21 H 0.011 0.989 22 H 0.090 0.910 23 H 0.263 0.737 24 H 0.386 0.614 25 H 0.029 0.971 26 H 0.076 0.924 27 H 0.348 0.652 28 H 0.339 0.661 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.610 -5.816 12.013 13.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.163 3.837 3 H 0.067 0.933 4 C -0.566 4.566 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.523 5.523 8 Si 0.728 3.272 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.350 5.350 13 C 0.343 3.657 14 O -0.431 6.431 15 C -0.158 4.158 16 C -0.019 4.019 17 N -0.372 5.372 18 C -0.203 4.203 19 C -0.191 4.191 20 H 0.044 0.956 21 H 0.030 0.970 22 H 0.108 0.892 23 H 0.073 0.927 24 H 0.218 0.782 25 H 0.047 0.953 26 H 0.095 0.905 27 H 0.161 0.839 28 H 0.152 0.848 29 H 0.120 0.880 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.035 -5.038 11.153 12.609 hybrid contribution 0.763 -0.818 0.099 1.123 sum 3.798 -5.856 11.253 13.241 Atomic orbital electron populations 1.22092 0.98762 0.98941 1.00701 1.18694 0.90602 0.94216 0.80205 0.93323 1.21228 1.32006 1.13006 0.90369 0.92175 1.24887 0.94950 0.94984 0.99002 1.69904 1.36212 1.22516 1.23697 0.86465 0.79153 0.79247 0.82322 1.20652 1.21122 1.19879 1.46355 1.65025 1.13448 1.10214 1.18901 0.76591 0.86829 0.83400 1.90608 1.52000 1.14634 1.85875 1.21719 0.94047 1.03264 0.96761 1.21134 0.90152 0.94428 0.96218 1.58456 1.09062 1.04523 1.65198 1.23062 1.02050 0.91734 1.03461 1.23016 1.01444 1.00049 0.94614 0.95575 0.96978 0.89168 0.92702 0.78182 0.95283 0.90531 0.83870 0.84832 0.88035 0.88351 0.88340 0.88569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.76 9.26 37.16 0.34 -3.42 16 2 C 0.26 7.05 2.60 -69.09 -0.18 6.87 16 3 H 0.05 1.51 7.51 -51.93 -0.39 1.12 16 4 C -0.53 -14.52 8.73 -34.44 -0.30 -14.82 16 5 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 6 C 0.06 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.89 -25.64 11.32 55.43 0.63 -25.01 16 8 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 12 N -0.70 -15.60 5.06 -54.94 -0.28 -15.88 16 13 C 0.56 11.83 6.03 -10.99 -0.07 11.76 16 14 O -0.55 -13.93 16.73 5.55 0.09 -13.84 16 15 C -0.15 -2.38 2.33 -155.62 -0.36 -2.74 16 16 C 0.11 1.47 6.94 -3.83 -0.03 1.45 16 17 N -0.84 -12.25 8.71 -10.38 -0.09 -12.34 16 18 C -0.17 -2.07 9.95 -26.73 -0.27 -2.33 16 19 C -0.15 -2.03 9.88 -26.69 -0.26 -2.29 16 20 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 21 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 22 H 0.09 2.51 6.07 -51.93 -0.32 2.19 16 23 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 24 H 0.39 7.65 8.54 -40.82 -0.35 7.30 16 25 H 0.03 0.32 7.88 -51.93 -0.41 -0.09 16 26 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.35 5.17 9.05 -39.29 -0.36 4.81 16 28 H 0.34 3.92 9.08 -39.29 -0.36 3.56 16 29 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 32 H 0.10 1.03 8.04 -51.93 -0.42 0.61 16 LS Contribution 274.76 15.07 4.14 4.14 Total: -1.00 -31.93 274.76 -6.41 -38.35 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -4.67 Total: 12.25 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: -1.22 Total: -3.85 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: 0.26 Total: -53.24 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: 0.09 Total: -13.84 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.93 -6.41 -38.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168721711.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.384 kcal (2) G-P(sol) polarization free energy of solvation -31.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds