Wall clock time and date at job start Mon Mar 30 2020 02:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47246 * 2 1 4 4 C 1.50699 * 109.47440 * 239.99917 * 2 1 3 5 5 H 1.07996 * 120.00058 * 240.00287 * 4 2 1 6 6 C 1.37878 * 119.99965 * 59.99528 * 4 2 1 7 7 N 1.31506 * 120.00079 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99795 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47051 * 90.00325 * 8 6 4 10 10 H 1.48500 * 109.46821 * 210.00382 * 8 6 4 11 11 H 1.48505 * 109.47314 * 330.00267 * 8 6 4 12 12 N 1.46496 * 109.47202 * 119.99330 * 2 1 3 13 13 C 1.34774 * 120.00502 * 275.00389 * 12 2 1 14 14 O 1.21285 * 119.99857 * 354.68073 * 13 12 2 15 15 C 1.50699 * 120.00173 * 174.67695 * 13 12 2 16 16 C 1.52995 * 115.54991 * 90.20564 * 15 13 12 17 17 N 1.46891 * 109.47204 * 30.58694 * 16 15 13 18 18 C 1.53001 * 117.49747 * 304.53257 * 15 13 12 19 19 C 1.53000 * 60.03402 * 252.47538 * 18 15 13 20 20 H 1.09003 * 109.47246 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47345 * 300.00511 * 1 2 3 22 22 H 1.09004 * 109.47157 * 60.00577 * 1 2 3 23 23 H 0.97002 * 120.00127 * 179.97438 * 7 6 4 24 24 H 0.97007 * 119.99874 * 94.99991 * 12 2 1 25 25 H 1.09003 * 109.47018 * 150.58588 * 16 15 13 26 26 H 1.08998 * 109.46723 * 270.58077 * 16 15 13 27 27 H 1.00907 * 111.00298 * 61.46582 * 17 16 15 28 28 H 1.00905 * 111.00364 * 185.42084 * 17 16 15 29 29 H 1.09005 * 117.50196 * 359.97438 * 18 15 13 30 30 H 1.09003 * 117.49611 * 144.97522 * 18 15 13 31 31 H 1.09002 * 117.49719 * 107.49933 * 19 18 15 32 32 H 1.09002 * 117.50163 * 252.52101 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8300 -2.6034 8 14 2.3215 -1.1205 -4.0079 9 1 1.3429 -2.1618 -4.4118 10 1 2.4867 -0.1415 -5.1122 11 1 3.6295 -1.7584 -3.7121 12 7 2.0183 -0.6904 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.9514 1.1784 2.3898 15 6 2.5338 -0.7530 3.6147 16 6 4.0360 -0.8451 3.8895 17 7 4.7081 0.3394 3.3391 18 6 1.6645 -1.9398 4.0350 19 6 1.6007 -0.6293 4.8219 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3634 0.5138 -0.8901 23 1 0.7094 1.1616 -3.4845 24 1 2.2490 -1.6317 1.1527 25 1 4.2063 -0.8925 4.9651 26 1 4.4372 -1.7424 3.4183 27 1 4.3703 1.1832 3.7775 28 1 5.7100 0.2613 3.4292 29 1 0.8126 -2.1889 3.4022 30 1 2.1630 -2.7865 4.5070 31 1 0.7069 -0.0161 4.7068 32 1 2.0576 -0.6136 5.8115 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168721711.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:58 Heat of formation + Delta-G solvation = -44.880834 kcal Electronic energy + Delta-G solvation = -14421.308253 eV Core-core repulsion = 11995.216054 eV Total energy + Delta-G solvation = -2426.092199 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.90257 -38.00549 -36.52896 -34.39946 -34.16779 -30.82656 -27.34425 -26.61740 -24.54772 -23.36195 -22.04807 -20.50820 -18.54212 -17.45971 -17.11645 -16.98242 -16.22106 -15.81512 -15.31164 -14.80212 -14.63406 -14.39368 -13.87889 -13.66092 -13.16304 -12.97087 -12.84840 -12.72960 -12.38085 -12.28457 -12.14666 -11.50520 -11.11986 -10.96853 -10.62907 -10.44803 -9.63988 -9.53305 -8.16019 -6.33200 1.44251 1.45850 1.56527 1.98695 2.36673 2.58110 2.83208 3.13921 3.47342 3.87509 3.97925 4.02047 4.33500 4.61518 4.70109 4.72993 4.75448 4.89640 4.97468 4.99077 5.10870 5.21807 5.46455 5.65694 5.73287 5.95727 6.13054 6.25531 6.63066 6.75262 7.10016 7.34787 7.69348 8.90561 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.041800 B = 0.008083 C = 0.007695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.693598 B = 3463.250644 C = 3637.788465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.271 3.729 3 H -0.007 1.007 4 C -0.544 4.544 5 H 0.070 0.930 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.974 3.026 9 H -0.269 1.269 10 H -0.286 1.286 11 H -0.265 1.265 12 N -0.702 5.702 13 C 0.554 3.446 14 O -0.602 6.602 15 C -0.174 4.174 16 C 0.115 3.885 17 N -0.868 5.868 18 C -0.142 4.142 19 C -0.148 4.148 20 H 0.041 0.959 21 H 0.008 0.992 22 H 0.067 0.933 23 H 0.265 0.735 24 H 0.400 0.600 25 H 0.063 0.937 26 H 0.087 0.913 27 H 0.342 0.658 28 H 0.353 0.647 29 H 0.091 0.909 30 H 0.137 0.863 31 H 0.076 0.924 32 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.528 -8.282 12.942 16.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.167 3.833 3 H 0.011 0.989 4 C -0.582 4.582 5 H 0.088 0.912 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.798 3.202 9 H -0.194 1.194 10 H -0.211 1.211 11 H -0.189 1.189 12 N -0.349 5.349 13 C 0.341 3.659 14 O -0.484 6.484 15 C -0.178 4.178 16 C -0.015 4.015 17 N -0.400 5.400 18 C -0.179 4.179 19 C -0.185 4.185 20 H 0.060 0.940 21 H 0.027 0.973 22 H 0.085 0.915 23 H 0.074 0.926 24 H 0.234 0.766 25 H 0.081 0.919 26 H 0.105 0.895 27 H 0.155 0.845 28 H 0.168 0.832 29 H 0.109 0.891 30 H 0.155 0.845 31 H 0.095 0.905 32 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.971 -7.548 12.111 14.813 hybrid contribution 0.456 0.009 -0.158 0.483 sum 4.427 -7.538 11.953 14.809 Atomic orbital electron populations 1.21893 0.98340 0.99412 0.99370 1.18286 0.90897 0.91823 0.82255 0.98927 1.21525 1.32367 1.13379 0.90901 0.91191 1.25832 0.94937 0.95618 1.02381 1.70058 1.37195 1.23963 1.24544 0.85321 0.78962 0.78052 0.77848 1.19432 1.21138 1.18938 1.46158 1.65237 1.13936 1.09599 1.19895 0.74865 0.86512 0.84655 1.90575 1.53806 1.17177 1.86819 1.21636 0.96241 1.05427 0.94494 1.21229 0.88014 0.94008 0.98296 1.58468 1.10442 1.05040 1.66040 1.23210 1.00590 0.92061 1.02049 1.23145 0.99989 1.00099 0.95310 0.93972 0.97267 0.91462 0.92580 0.76587 0.91876 0.89499 0.84494 0.83222 0.89057 0.84467 0.90507 0.85206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.94 9.26 71.98 0.67 -6.27 16 2 C 0.27 14.88 2.60 44.24 0.12 14.99 16 3 H -0.01 -0.47 7.51 -2.39 -0.02 -0.49 16 4 C -0.54 -30.10 8.73 25.60 0.22 -29.88 16 5 H 0.07 3.65 7.74 -2.91 -0.02 3.62 16 6 C 0.01 0.66 5.30 84.66 0.45 1.11 16 7 N -0.92 -54.39 11.32 21.45 0.24 -54.15 16 8 Si 0.97 43.22 29.54 68.60 2.03 45.24 16 9 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 10 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 12 N -0.70 -31.35 5.06 -446.11 -2.26 -33.61 16 13 C 0.55 23.62 6.03 87.66 0.53 24.15 16 14 O -0.60 -31.55 16.73 -3.05 -0.05 -31.60 16 15 C -0.17 -5.04 2.33 -52.90 -0.12 -5.17 16 16 C 0.12 2.69 6.94 86.30 0.60 3.29 16 17 N -0.87 -24.34 8.71 -186.74 -1.63 -25.97 16 18 C -0.14 -3.05 9.95 30.59 0.30 -2.75 16 19 C -0.15 -3.52 9.88 30.62 0.30 -3.22 16 20 H 0.04 2.02 8.14 -2.39 -0.02 2.01 16 21 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 22 H 0.07 3.86 6.07 -2.39 -0.01 3.85 16 23 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 24 H 0.40 15.50 8.54 -92.70 -0.79 14.71 16 25 H 0.06 1.08 7.88 -2.39 -0.02 1.06 16 26 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.34 10.09 9.05 -89.69 -0.81 9.28 16 28 H 0.35 7.69 9.08 -89.69 -0.81 6.87 16 29 H 0.09 2.18 8.14 -2.38 -0.02 2.16 16 30 H 0.14 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.13 2.22 8.04 -2.39 -0.02 2.20 16 Total: -1.00 -71.55 274.76 0.12 -71.43 By element: Atomic # 1 Polarization: 33.67 SS G_CDS: -1.28 Total: 32.40 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: 3.06 Total: -3.74 kcal Atomic # 7 Polarization: -110.09 SS G_CDS: -3.64 Total: -113.73 kcal Atomic # 8 Polarization: -31.55 SS G_CDS: -0.05 Total: -31.60 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Total: -71.55 0.12 -71.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168721711.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.552 kcal (2) G-P(sol) polarization free energy of solvation -71.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds