Wall clock time and date at job start Mon Mar 30 2020 02:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.47352 * 2 1 4 4 C 1.37101 * 119.99996 * 263.89278 * 3 2 1 5 5 H 1.08004 * 120.00397 * 185.34002 * 4 3 2 6 6 C 1.38953 * 120.00106 * 5.33653 * 4 3 2 7 7 N 1.31407 * 119.99869 * 34.01728 * 6 4 3 8 8 Si 1.86799 * 119.99969 * 214.01736 * 6 4 3 9 9 H 1.48501 * 109.46927 * 264.99753 * 8 6 4 10 10 H 1.48503 * 109.46878 * 145.00151 * 8 6 4 11 11 H 1.48497 * 109.47425 * 24.99965 * 8 6 4 12 12 C 1.34773 * 120.00270 * 83.88502 * 3 2 1 13 13 O 1.21290 * 120.00468 * 185.27659 * 12 3 2 14 14 C 1.50703 * 119.99507 * 5.27565 * 12 3 2 15 15 H 1.08993 * 110.33847 * 325.97271 * 14 12 3 16 16 C 1.54915 * 110.37264 * 88.34893 * 14 12 3 17 17 C 1.55137 * 101.65245 * 155.89660 * 16 14 12 18 18 C 1.54320 * 103.02117 * 324.34441 * 17 16 14 19 19 N 1.47448 * 107.23071 * 22.28521 * 18 17 16 20 20 H 1.09001 * 109.46703 * 184.85000 * 1 2 3 21 21 H 1.09003 * 109.46935 * 304.84289 * 1 2 3 22 22 H 1.08992 * 109.47599 * 64.84757 * 1 2 3 23 23 H 1.09008 * 109.46997 * 240.00268 * 2 1 3 24 24 H 1.08998 * 109.47538 * 120.00505 * 2 1 3 25 25 H 0.97003 * 120.00561 * 179.97438 * 7 6 4 26 26 H 1.08999 * 110.99010 * 273.98770 * 16 14 12 27 27 H 1.09004 * 110.98835 * 37.80342 * 16 14 12 28 28 H 1.09001 * 110.70579 * 205.96142 * 17 16 14 29 29 H 1.08995 * 110.85658 * 82.80067 * 17 16 14 30 30 H 1.08993 * 109.89212 * 262.87979 * 18 17 16 31 31 H 1.09004 * 110.02338 * 141.76602 * 18 17 16 32 32 H 1.00900 * 110.99520 * 238.72138 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3660 1.9854 -1.1806 5 1 2.8067 2.9714 -1.1734 6 6 2.1514 1.3291 -2.3865 7 7 1.1096 0.5412 -2.5293 8 14 3.3440 1.5671 -3.8044 9 1 2.8378 2.6356 -4.7028 10 1 3.4676 0.2979 -4.5654 11 1 4.6744 1.9568 -3.2722 12 6 2.1258 2.0580 1.1605 13 8 2.4381 3.2300 1.1525 14 6 1.8579 1.3585 2.4682 15 1 1.0740 0.6114 2.3446 16 6 3.1542 0.7002 3.0031 17 6 2.8604 0.6205 4.5244 18 6 2.0601 1.9125 4.7921 19 7 1.4757 2.3385 3.5071 20 1 -0.3633 -1.0240 0.0869 21 1 -0.3633 0.5872 0.8435 22 1 -0.3634 0.4367 -0.9301 23 1 1.8933 -0.5138 -0.8901 24 1 1.8934 -0.5139 0.8899 25 1 0.9595 0.0833 -3.3712 26 1 3.2905 -0.2946 2.5791 27 1 4.0220 1.3295 2.8055 28 1 3.7882 0.6163 5.0964 29 1 2.2612 -0.2595 4.7583 30 1 2.7245 2.6882 5.1725 31 1 1.2667 1.7173 5.5137 32 1 1.7842 3.2667 3.2597 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000209539182.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:49 Heat of formation + Delta-G solvation = -24.368754 kcal Electronic energy + Delta-G solvation = -14877.663932 eV Core-core repulsion = 12452.461204 eV Total energy + Delta-G solvation = -2425.202729 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.28083 -36.97025 -34.98506 -31.94073 -29.70507 -29.42413 -28.82538 -24.96886 -22.47929 -21.54903 -20.66213 -18.76665 -17.03610 -16.56746 -15.44863 -14.96522 -14.28321 -13.90598 -13.81992 -13.21978 -12.80064 -12.60162 -12.24367 -11.98122 -11.57607 -11.29471 -11.10876 -11.00782 -10.88935 -10.79679 -10.49908 -10.38454 -10.12884 -9.84097 -8.86415 -8.37164 -8.06245 -7.82122 -6.45854 -3.73553 3.12117 3.25439 3.33144 3.77322 4.11312 4.65887 4.82306 4.94883 5.05796 5.15426 5.40774 5.65375 5.76003 5.79337 5.97450 6.06737 6.12486 6.21221 6.25482 6.50230 6.53572 6.59912 6.73567 7.17840 7.25753 7.43167 7.73367 7.86521 8.08925 8.48834 9.16508 9.43369 9.98655 10.57050 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.046540 B = 0.009453 C = 0.008817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.483265 B = 2961.366444 C = 3174.887994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.119 3.881 3 N -0.432 5.432 4 C -0.319 4.319 5 H 0.105 0.895 6 C 0.039 3.961 7 N -0.849 5.849 8 Si 0.906 3.094 9 H -0.279 1.279 10 H -0.282 1.282 11 H -0.269 1.269 12 C 0.436 3.564 13 O -0.596 6.596 14 C 0.067 3.933 15 H 0.096 0.904 16 C -0.140 4.140 17 C -0.139 4.139 18 C 0.048 3.952 19 N -0.672 5.672 20 H 0.037 0.963 21 H 0.031 0.969 22 H 0.095 0.905 23 H 0.093 0.907 24 H 0.037 0.963 25 H 0.268 0.732 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.047 0.953 31 H 0.070 0.930 32 H 0.353 0.647 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.616 -4.534 7.856 9.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.005 4.005 3 N -0.149 5.149 4 C -0.446 4.446 5 H 0.123 0.877 6 C -0.166 4.166 7 N -0.486 5.486 8 Si 0.731 3.269 9 H -0.205 1.205 10 H -0.207 1.207 11 H -0.194 1.194 12 C 0.224 3.776 13 O -0.482 6.482 14 C -0.046 4.046 15 H 0.114 0.886 16 C -0.179 4.179 17 C -0.177 4.177 18 C -0.082 4.082 19 N -0.305 5.305 20 H 0.056 0.944 21 H 0.051 0.949 22 H 0.114 0.886 23 H 0.111 0.889 24 H 0.055 0.945 25 H 0.078 0.922 26 H 0.094 0.906 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 1.015 -4.344 7.787 8.974 hybrid contribution 1.328 0.068 -0.917 1.615 sum 2.343 -4.276 6.870 8.425 Atomic orbital electron populations 1.22189 0.96408 0.99437 1.03423 1.21409 0.94728 0.83788 1.00539 1.43772 1.54566 1.11163 1.05413 1.19638 1.38678 1.04004 0.82301 0.87728 1.25128 0.95919 0.97078 0.98440 1.70181 1.22051 1.30133 1.26272 0.86266 0.82042 0.77780 0.80768 1.20459 1.20728 1.19395 1.19828 0.85498 0.87202 0.85032 1.90468 1.54705 1.16383 1.86638 1.22417 0.96238 0.94717 0.91205 0.88613 1.23062 0.98418 1.01485 0.94946 1.22772 0.99993 0.98680 0.96272 1.22618 0.96610 0.95864 0.93113 1.61846 1.60680 1.06768 1.01213 0.94370 0.94949 0.88618 0.88883 0.94519 0.92169 0.90614 0.91072 0.91354 0.91115 0.93406 0.91147 0.82676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.31 9.59 37.16 0.36 -2.95 16 2 C 0.12 2.64 4.94 -4.04 -0.02 2.62 16 3 N -0.43 -11.03 2.64 -114.81 -0.30 -11.34 16 4 C -0.32 -8.87 9.36 -14.93 -0.14 -9.01 16 5 H 0.11 3.10 7.38 -52.48 -0.39 2.72 16 6 C 0.04 1.01 4.68 -17.47 -0.08 0.93 16 7 N -0.85 -21.61 9.12 55.50 0.51 -21.11 16 8 Si 0.91 20.14 29.66 -169.99 -5.04 15.10 16 9 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 10 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 11 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 12 C 0.44 10.84 6.82 -10.99 -0.07 10.76 16 13 O -0.60 -16.73 15.28 5.55 0.08 -16.64 16 14 C 0.07 1.33 2.86 -67.33 -0.19 1.14 16 15 H 0.10 1.86 5.66 -51.93 -0.29 1.57 16 16 C -0.14 -2.31 6.33 -24.59 -0.16 -2.47 16 17 C -0.14 -1.86 6.94 -24.91 -0.17 -2.03 16 18 C 0.05 0.69 7.58 -2.83 -0.02 0.67 16 19 N -0.67 -12.54 7.30 -105.05 -0.77 -13.31 16 20 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 21 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 22 H 0.10 2.30 6.25 -51.93 -0.32 1.98 16 23 H 0.09 2.19 5.94 -51.92 -0.31 1.88 16 24 H 0.04 0.70 6.01 -51.93 -0.31 0.39 16 25 H 0.27 6.43 8.31 -40.82 -0.34 6.09 16 26 H 0.08 1.16 7.54 -51.93 -0.39 0.77 16 27 H 0.07 1.27 8.05 -51.93 -0.42 0.85 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.35 7.16 7.34 -39.29 -0.29 6.87 16 LS Contribution 254.84 15.07 3.84 3.84 Total: -1.00 -29.26 254.84 -6.53 -35.79 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -4.35 Total: 8.00 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: -0.50 Total: -0.34 kcal Atomic # 7 Polarization: -45.19 SS G_CDS: -0.56 Total: -45.75 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: 0.08 Total: -16.64 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.04 Total: 15.10 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -29.26 -6.53 -35.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000209539182.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.418 kcal (2) G-P(sol) polarization free energy of solvation -29.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds