Wall clock time and date at job start Mon Mar 30 2020 02:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46849 * 2 1 4 4 C 1.50697 * 109.47243 * 120.00383 * 2 1 3 5 5 H 1.07998 * 120.00431 * 119.99712 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.99359 * 4 2 1 7 7 N 1.31513 * 119.99891 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99835 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47046 * 90.00827 * 8 6 4 10 10 H 1.48507 * 109.47017 * 210.00345 * 8 6 4 11 11 H 1.48496 * 109.47568 * 330.00257 * 8 6 4 12 12 N 1.46903 * 109.46690 * 240.00052 * 2 1 3 13 13 C 1.48537 * 110.99878 * 187.39469 * 12 2 1 14 14 C 1.54937 * 103.22931 * 200.28029 * 13 12 2 15 15 C 1.54603 * 102.91960 * 37.41592 * 14 13 12 16 16 H 1.09001 * 110.39245 * 96.99816 * 15 14 13 17 17 C 1.50700 * 110.30740 * 219.12758 * 15 14 13 18 18 N 1.34777 * 119.99675 * 295.99283 * 17 15 14 19 19 O 1.21283 * 119.99803 * 115.71407 * 17 15 14 20 20 C 1.47898 * 110.99931 * 70.00439 * 12 2 1 21 21 H 1.09000 * 109.46849 * 179.97438 * 1 2 3 22 22 H 1.09006 * 109.46917 * 299.99828 * 1 2 3 23 23 H 1.08994 * 109.47135 * 59.99729 * 1 2 3 24 24 H 0.96997 * 119.99637 * 179.97438 * 7 6 4 25 25 H 1.09000 * 110.66462 * 318.71822 * 13 12 2 26 26 H 1.08999 * 110.66720 * 81.67706 * 13 12 2 27 27 H 1.08993 * 110.72450 * 279.05925 * 14 13 12 28 28 H 1.08996 * 110.72344 * 155.77192 * 14 13 12 29 29 H 0.97004 * 119.99652 * 179.72868 * 18 17 15 30 30 H 0.97000 * 119.99894 * 359.71837 * 18 17 15 31 31 H 1.09006 * 109.92147 * 26.48408 * 20 12 2 32 32 H 1.09005 * 109.91631 * 265.19177 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 0.9430 0.8296 2.6034 8 14 2.3215 -1.1205 4.0078 9 1 3.6298 -0.5461 4.4123 10 1 1.3433 -0.9494 5.1120 11 1 2.4859 -2.5663 3.7119 12 7 2.0196 -0.6925 -1.1995 13 6 3.4936 -0.8689 -1.1480 14 6 3.8750 -1.1007 -2.6317 15 6 2.9211 -0.1467 -3.3869 16 1 3.4267 0.7907 -3.6188 17 6 2.4230 -0.7982 -4.6512 18 7 3.2896 -1.1094 -5.6354 19 8 1.2431 -1.0469 -4.7809 20 6 1.7511 0.1027 -2.4173 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5138 -0.8899 24 1 0.7084 1.1608 3.4845 25 1 3.9752 0.0299 -0.7628 26 1 3.7564 -1.7350 -0.5407 27 1 3.6927 -2.1360 -2.9196 28 1 4.9149 -0.8270 -2.8098 29 1 2.9695 -1.5323 -6.4476 30 1 4.2333 -0.9104 -5.5316 31 1 1.6972 1.1617 -2.1649 32 1 0.8155 -0.2212 -2.8734 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000217882231.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:20 Heat of formation + Delta-G solvation = -39.482252 kcal Electronic energy + Delta-G solvation = -14515.020786 eV Core-core repulsion = 12089.162686 eV Total energy + Delta-G solvation = -2425.858099 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.79072 -37.47716 -33.94732 -33.40477 -31.19181 -28.69125 -27.60057 -25.07259 -22.70947 -21.13810 -19.92388 -19.07693 -17.30588 -16.86966 -16.12841 -15.44480 -14.56655 -14.39088 -13.92260 -13.40152 -13.01166 -12.52641 -12.16307 -11.52590 -11.48339 -11.05328 -10.96140 -10.73622 -10.63268 -10.44764 -10.05136 -10.01209 -9.77332 -9.64914 -9.61511 -8.77725 -8.41441 -7.20544 -5.98604 -4.03442 2.80381 3.31377 3.38294 3.42469 3.62457 4.43023 4.85313 4.97215 5.01915 5.29983 5.40799 5.55697 5.82489 5.97957 6.05972 6.34292 6.57233 6.65525 6.67857 6.84577 6.94929 7.16987 7.18606 7.37786 7.54720 7.70376 7.85779 8.19831 8.36790 8.38548 8.60034 9.03051 9.61620 11.08301 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.056955 B = 0.007714 C = 0.007113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.498482 B = 3628.783738 C = 3935.448423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.204 3.796 3 H 0.001 0.999 4 C -0.506 4.506 5 H 0.062 0.938 6 C 0.059 3.941 7 N -0.893 5.893 8 Si 0.896 3.104 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.510 5.510 13 C 0.053 3.947 14 C -0.115 4.115 15 C -0.123 4.123 16 H 0.094 0.906 17 C 0.528 3.472 18 N -0.860 5.860 19 O -0.536 6.536 20 C 0.044 3.956 21 H 0.034 0.966 22 H 0.083 0.917 23 H 0.007 0.993 24 H 0.260 0.740 25 H 0.042 0.958 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.397 0.603 30 H 0.399 0.601 31 H 0.039 0.961 32 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.563 -1.294 -11.810 14.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.097 3.903 3 H 0.018 0.982 4 C -0.544 4.544 5 H 0.080 0.920 6 C -0.142 4.142 7 N -0.532 5.532 8 Si 0.724 3.276 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.236 5.236 13 C -0.075 4.075 14 C -0.153 4.153 15 C -0.145 4.145 16 H 0.113 0.887 17 C 0.313 3.687 18 N -0.424 5.424 19 O -0.411 6.411 20 C -0.084 4.084 21 H 0.053 0.947 22 H 0.102 0.898 23 H 0.026 0.974 24 H 0.070 0.930 25 H 0.060 0.940 26 H 0.099 0.901 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.227 0.773 30 H 0.227 0.773 31 H 0.058 0.942 32 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.381 -1.752 -11.558 13.318 hybrid contribution 1.086 0.378 0.600 1.297 sum 7.467 -1.374 -10.958 13.331 Atomic orbital electron populations 1.21745 0.97502 0.99710 0.99775 1.19452 0.92789 0.91935 0.86104 0.98194 1.21177 1.31064 1.12327 0.89869 0.91965 1.24943 0.95178 0.95088 0.99028 1.69901 1.36815 1.23095 1.23370 0.86528 0.78399 0.80092 0.82567 1.20830 1.21251 1.19862 1.64932 1.10558 1.45344 1.02728 1.22961 0.90261 1.01106 0.93153 1.22555 0.97082 0.98865 0.96841 1.22212 0.99366 0.99543 0.93369 0.88744 1.20623 0.85955 0.77467 0.84682 1.43880 1.11687 1.66107 1.20726 1.90717 1.16947 1.53295 1.80163 1.22872 0.97644 0.96620 0.91292 0.94694 0.89804 0.97405 0.93002 0.94015 0.90149 0.90995 0.91236 0.77324 0.77280 0.94248 0.89001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.35 9.03 37.16 0.34 -3.01 16 2 C 0.20 5.30 1.85 -68.86 -0.13 5.17 16 3 H 0.00 0.01 7.81 -51.93 -0.41 -0.39 16 4 C -0.51 -14.02 8.01 -34.44 -0.28 -14.29 16 5 H 0.06 1.71 6.52 -52.49 -0.34 1.36 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 7 N -0.89 -25.78 11.32 55.43 0.63 -25.15 16 8 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 11 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 12 N -0.51 -11.47 5.10 -223.88 -1.14 -12.61 16 13 C 0.05 1.02 5.55 -1.90 -0.01 1.01 16 14 C -0.11 -1.64 6.57 -24.87 -0.16 -1.80 16 15 C -0.12 -1.83 3.38 -90.41 -0.31 -2.14 16 16 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 17 C 0.53 7.78 7.28 -10.98 -0.08 7.70 16 18 N -0.86 -8.16 8.84 31.22 0.28 -7.88 16 19 O -0.54 -10.36 16.07 5.55 0.09 -10.27 16 20 C 0.04 0.88 5.40 -2.76 -0.01 0.86 16 21 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 22 H 0.08 2.33 6.07 -51.93 -0.32 2.01 16 23 H 0.01 0.17 7.52 -51.93 -0.39 -0.22 16 24 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 25 H 0.04 0.82 8.02 -51.93 -0.42 0.40 16 26 H 0.08 1.59 7.14 -51.93 -0.37 1.21 16 27 H 0.07 1.04 7.86 -51.93 -0.41 0.63 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.40 3.26 8.93 -40.82 -0.36 2.89 16 30 H 0.40 2.55 8.83 -40.82 -0.36 2.19 16 31 H 0.04 0.78 7.57 -51.93 -0.39 0.39 16 32 H 0.09 1.97 6.42 -51.93 -0.33 1.64 16 LS Contribution 259.99 15.07 3.92 3.92 Total: -1.00 -32.32 259.99 -6.49 -38.81 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -4.50 Total: 1.72 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: -0.74 Total: -4.95 kcal Atomic # 7 Polarization: -45.40 SS G_CDS: -0.24 Total: -45.64 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.09 Total: -10.27 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -32.32 -6.49 -38.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217882231.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.674 kcal (2) G-P(sol) polarization free energy of solvation -32.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds