Wall clock time and date at job start Mon Mar 30 2020 02:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46849 * 2 1 4 4 C 1.50697 * 109.47243 * 120.00383 * 2 1 3 5 5 H 1.07998 * 120.00431 * 119.99712 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.99359 * 4 2 1 7 7 N 1.31513 * 119.99891 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99835 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47046 * 90.00827 * 8 6 4 10 10 H 1.48507 * 109.47017 * 210.00345 * 8 6 4 11 11 H 1.48496 * 109.47568 * 330.00257 * 8 6 4 12 12 N 1.46903 * 109.46690 * 240.00052 * 2 1 3 13 13 C 1.48537 * 110.99878 * 187.39469 * 12 2 1 14 14 C 1.54937 * 103.22931 * 200.28029 * 13 12 2 15 15 C 1.54603 * 102.91960 * 37.41592 * 14 13 12 16 16 H 1.09001 * 110.39245 * 96.99816 * 15 14 13 17 17 C 1.50700 * 110.30740 * 219.12758 * 15 14 13 18 18 N 1.34777 * 119.99675 * 295.99283 * 17 15 14 19 19 O 1.21283 * 119.99803 * 115.71407 * 17 15 14 20 20 C 1.47898 * 110.99931 * 70.00439 * 12 2 1 21 21 H 1.09000 * 109.46849 * 179.97438 * 1 2 3 22 22 H 1.09006 * 109.46917 * 299.99828 * 1 2 3 23 23 H 1.08994 * 109.47135 * 59.99729 * 1 2 3 24 24 H 0.96997 * 119.99637 * 179.97438 * 7 6 4 25 25 H 1.09000 * 110.66462 * 318.71822 * 13 12 2 26 26 H 1.08999 * 110.66720 * 81.67706 * 13 12 2 27 27 H 1.08993 * 110.72450 * 279.05925 * 14 13 12 28 28 H 1.08996 * 110.72344 * 155.77192 * 14 13 12 29 29 H 0.97004 * 119.99652 * 179.72868 * 18 17 15 30 30 H 0.97000 * 119.99894 * 359.71837 * 18 17 15 31 31 H 1.09006 * 109.92147 * 26.48408 * 20 12 2 32 32 H 1.09005 * 109.91631 * 265.19177 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 0.9430 0.8296 2.6034 8 14 2.3215 -1.1205 4.0078 9 1 3.6298 -0.5461 4.4123 10 1 1.3433 -0.9494 5.1120 11 1 2.4859 -2.5663 3.7119 12 7 2.0196 -0.6925 -1.1995 13 6 3.4936 -0.8689 -1.1480 14 6 3.8750 -1.1007 -2.6317 15 6 2.9211 -0.1467 -3.3869 16 1 3.4267 0.7907 -3.6188 17 6 2.4230 -0.7982 -4.6512 18 7 3.2896 -1.1094 -5.6354 19 8 1.2431 -1.0469 -4.7809 20 6 1.7511 0.1027 -2.4173 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5138 -0.8899 24 1 0.7084 1.1608 3.4845 25 1 3.9752 0.0299 -0.7628 26 1 3.7564 -1.7350 -0.5407 27 1 3.6927 -2.1360 -2.9196 28 1 4.9149 -0.8270 -2.8098 29 1 2.9695 -1.5323 -6.4476 30 1 4.2333 -0.9104 -5.5316 31 1 1.6972 1.1617 -2.1649 32 1 0.8155 -0.2212 -2.8734 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000217882231.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:20 Heat of formation + Delta-G solvation = -65.960746 kcal Electronic energy + Delta-G solvation = -14516.168979 eV Core-core repulsion = 12089.162686 eV Total energy + Delta-G solvation = -2427.006293 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.06649 -39.00773 -35.70717 -34.62867 -33.00829 -30.20375 -29.35045 -27.15882 -24.20623 -22.64812 -21.55389 -20.49893 -18.52368 -18.30787 -17.72008 -17.15354 -16.15841 -15.82046 -15.42880 -14.93112 -14.78881 -14.27264 -13.76015 -13.28454 -13.13034 -12.83381 -12.69086 -12.48830 -12.25203 -12.18461 -12.02146 -11.68076 -11.60065 -10.91034 -10.81803 -10.60954 -10.54228 -9.00319 -8.11791 -6.24373 1.41953 1.43988 1.54563 1.67226 2.42333 2.62940 3.16449 3.45329 3.58742 3.80101 4.11049 4.42757 4.46941 4.63962 4.74407 4.86035 4.95407 5.00697 5.03822 5.13495 5.22725 5.27571 5.45002 5.71193 5.74628 5.96926 6.19503 6.36962 6.52186 6.65227 6.90380 7.41828 7.45180 8.94892 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.056955 B = 0.007714 C = 0.007113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.498482 B = 3628.783738 C = 3935.448423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.209 3.791 3 H -0.030 1.030 4 C -0.522 4.522 5 H 0.061 0.939 6 C 0.009 3.991 7 N -0.922 5.922 8 Si 0.964 3.036 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.269 1.269 12 N -0.528 5.528 13 C 0.047 3.953 14 C -0.096 4.096 15 C -0.114 4.114 16 H 0.129 0.871 17 C 0.528 3.472 18 N -0.830 5.830 19 O -0.590 6.590 20 C 0.041 3.959 21 H 0.026 0.974 22 H 0.062 0.938 23 H 0.019 0.981 24 H 0.262 0.738 25 H 0.033 0.967 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.118 0.882 29 H 0.408 0.592 30 H 0.419 0.581 31 H 0.030 0.970 32 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.794 -1.980 -12.819 16.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.102 3.898 3 H -0.013 1.013 4 C -0.560 4.560 5 H 0.079 0.921 6 C -0.189 4.189 7 N -0.562 5.562 8 Si 0.789 3.211 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.194 1.194 12 N -0.253 5.253 13 C -0.081 4.081 14 C -0.134 4.134 15 C -0.136 4.136 16 H 0.147 0.853 17 C 0.313 3.687 18 N -0.394 5.394 19 O -0.470 6.470 20 C -0.088 4.088 21 H 0.045 0.955 22 H 0.081 0.919 23 H 0.038 0.962 24 H 0.071 0.929 25 H 0.051 0.949 26 H 0.088 0.912 27 H 0.092 0.908 28 H 0.137 0.863 29 H 0.239 0.761 30 H 0.251 0.749 31 H 0.048 0.952 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.678 -2.447 -12.612 15.504 hybrid contribution 0.402 0.610 0.861 1.129 sum 9.080 -1.837 -11.751 14.963 Atomic orbital electron populations 1.21592 0.97999 0.98844 0.99255 1.19230 0.92457 0.90484 0.87668 1.01291 1.21441 1.31261 1.12416 0.90874 0.92085 1.25777 0.95278 0.95766 1.02093 1.70031 1.37680 1.24335 1.24114 0.85469 0.78070 0.78993 0.78571 1.19764 1.21010 1.19355 1.64790 1.13058 1.45246 1.02192 1.23028 0.88098 1.00225 0.96783 1.22508 0.99468 0.98924 0.92527 1.22146 0.97433 1.01531 0.92504 0.85274 1.20543 0.85580 0.77194 0.85348 1.43571 1.12126 1.64073 1.19624 1.90711 1.19339 1.55761 1.81231 1.22796 0.99169 0.95509 0.91301 0.95524 0.91934 0.96220 0.92895 0.94873 0.91209 0.90781 0.86339 0.76068 0.74890 0.95194 0.91263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.37 9.03 71.98 0.65 -5.72 16 2 C 0.21 11.21 1.85 44.17 0.08 11.29 16 3 H -0.03 -1.77 7.81 -2.39 -0.02 -1.79 16 4 C -0.52 -29.37 8.01 25.60 0.21 -29.16 16 5 H 0.06 3.37 6.52 -2.91 -0.02 3.35 16 6 C 0.01 0.53 5.30 84.66 0.45 0.98 16 7 N -0.92 -54.25 11.32 21.45 0.24 -54.01 16 8 Si 0.96 44.07 29.54 68.60 2.03 46.10 16 9 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 11 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 12 N -0.53 -23.97 5.10 -862.21 -4.40 -28.37 16 13 C 0.05 1.73 5.55 86.65 0.48 2.21 16 14 C -0.10 -2.41 6.57 31.80 0.21 -2.20 16 15 C -0.11 -3.11 3.38 -10.66 -0.04 -3.14 16 16 H 0.13 2.65 8.14 -2.39 -0.02 2.64 16 17 C 0.53 14.31 7.28 87.66 0.64 14.94 16 18 N -0.83 -12.54 8.84 -173.53 -1.53 -14.07 16 19 O -0.59 -22.49 16.07 -3.04 -0.05 -22.54 16 20 C 0.04 1.62 5.40 86.45 0.47 2.08 16 21 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 22 H 0.06 3.60 6.07 -2.38 -0.01 3.59 16 23 H 0.02 0.95 7.52 -2.39 -0.02 0.93 16 24 H 0.26 14.60 8.31 -92.71 -0.77 13.82 16 25 H 0.03 1.28 8.02 -2.39 -0.02 1.26 16 26 H 0.07 2.71 7.14 -2.39 -0.02 2.69 16 27 H 0.07 1.87 7.86 -2.39 -0.02 1.85 16 28 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.41 5.25 8.93 -92.71 -0.83 4.42 16 30 H 0.42 3.20 8.83 -92.71 -0.82 2.38 16 31 H 0.03 1.21 7.57 -2.38 -0.02 1.20 16 32 H 0.07 3.06 6.42 -2.38 -0.02 3.04 16 Total: -1.00 -72.54 259.99 -1.08 -73.62 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -0.51 Total: 7.99 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: 3.14 Total: -8.72 kcal Atomic # 7 Polarization: -90.76 SS G_CDS: -5.69 Total: -96.45 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.05 Total: -22.54 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -72.54 -1.08 -73.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217882231.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.662 kcal (2) G-P(sol) polarization free energy of solvation -72.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds