Wall clock time and date at job start Mon Mar 30 2020 02:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46497 * 109.46798 * 2 1 4 4 C 1.33716 * 118.54113 * 89.99841 * 3 2 1 5 5 O 1.21279 * 118.62255 * 1.68683 * 4 3 2 6 6 C 1.50255 * 122.75175 * 181.70390 * 4 3 2 7 7 H 1.09007 * 109.38380 * 102.85485 * 6 4 3 8 8 C 1.50694 * 109.38811 * 222.64351 * 6 4 3 9 9 H 1.08002 * 120.00179 * 0.02562 * 8 6 4 10 10 C 1.37879 * 120.00472 * 180.02562 * 8 6 4 11 11 N 1.31514 * 119.99350 * 359.97438 * 10 8 6 12 12 Si 1.86798 * 120.00608 * 179.97438 * 10 8 6 13 13 H 1.48490 * 109.47339 * 179.97438 * 12 10 8 14 14 H 1.48493 * 109.47239 * 300.00306 * 12 10 8 15 15 H 1.48504 * 109.46636 * 59.99865 * 12 10 8 16 16 N 1.46900 * 109.98205 * 342.80227 * 6 4 3 17 17 C 1.47186 * 110.17356 * 50.29599 * 16 6 4 18 18 C 1.46020 * 118.53566 * 270.01590 * 3 2 1 19 19 H 1.09001 * 109.37192 * 281.99679 * 18 3 2 20 20 C 1.53003 * 109.36978 * 41.64387 * 18 3 2 21 21 H 1.09001 * 109.46789 * 60.00713 * 1 2 3 22 22 H 1.08996 * 109.46789 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47266 * 300.00332 * 1 2 3 24 24 H 1.08994 * 109.47266 * 239.99668 * 2 1 3 25 25 H 1.09001 * 109.46789 * 119.99286 * 2 1 3 26 26 H 0.97005 * 119.99661 * 179.97438 * 11 10 8 27 27 H 1.00894 * 111.00007 * 173.66152 * 16 6 4 28 28 H 1.09004 * 109.59299 * 171.22835 * 17 16 6 29 29 H 1.09000 * 109.72145 * 50.84858 * 17 16 6 30 30 H 1.08998 * 109.47353 * 60.00366 * 20 18 3 31 31 H 1.09001 * 109.46747 * 179.97438 * 20 18 3 32 32 H 1.08994 * 109.47273 * 299.99759 * 20 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2312 1.9836 1.1747 5 8 2.0417 1.3535 2.1935 6 6 2.6950 3.4085 1.2852 7 1 1.8511 4.0438 1.5542 8 6 3.7557 3.5080 2.3511 9 1 4.0616 2.6251 2.8926 10 6 4.3356 4.7263 2.6351 11 7 3.9633 5.8013 1.9753 12 14 5.6498 4.8498 3.9568 13 1 6.1097 6.2574 4.0676 14 1 5.0863 4.4088 5.2579 15 1 6.7987 3.9812 3.5950 16 7 3.2504 3.8567 0.0013 17 6 2.3110 3.5555 -1.0910 18 6 2.2505 2.0390 -1.2828 19 1 3.1937 1.6896 -1.7028 20 6 1.1109 1.6939 -2.2436 21 1 -0.3633 0.5137 -0.8901 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5137 0.8901 26 1 4.3710 6.6585 2.1754 27 1 3.4717 4.8407 0.0268 28 1 2.6568 4.0268 -2.0110 29 1 1.3198 3.9318 -0.8378 30 1 0.1653 2.0373 -1.8241 31 1 1.2823 2.1845 -3.2018 32 1 1.0729 0.6144 -2.3895 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218982416.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:57 Heat of formation + Delta-G solvation = -30.849535 kcal Electronic energy + Delta-G solvation = -14973.699777 eV Core-core repulsion = 12548.216020 eV Total energy + Delta-G solvation = -2425.483756 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.69482 -36.12583 -34.97104 -32.40438 -30.78853 -29.75429 -27.54784 -24.20534 -23.88110 -21.60420 -21.44897 -17.82467 -16.71631 -16.15676 -15.70386 -14.61321 -14.53493 -13.93654 -13.77117 -13.33000 -13.08705 -12.58473 -12.40052 -12.21077 -11.76422 -11.59570 -11.47426 -10.97567 -10.82243 -10.78915 -10.63102 -10.37533 -10.09182 -9.41599 -8.70264 -8.48995 -8.01319 -7.17961 -6.15428 -4.14261 3.35365 3.37233 3.42176 3.71906 3.74212 4.43861 4.99816 5.19911 5.26569 5.30640 5.49202 5.62223 5.70127 5.79054 5.86659 5.88561 5.94415 6.06163 6.18358 6.26756 6.42850 6.50434 6.54082 7.05056 7.17348 7.73076 7.87239 8.36754 8.38381 8.79870 8.91890 9.23853 9.51978 10.97388 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.045046 B = 0.010172 C = 0.008768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.440136 B = 2751.889058 C = 3192.514243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.106 3.894 3 N -0.611 5.611 4 C 0.529 3.471 5 O -0.557 6.557 6 C 0.206 3.794 7 H 0.029 0.971 8 C -0.486 4.486 9 H 0.069 0.931 10 C 0.067 3.933 11 N -0.904 5.904 12 Si 0.909 3.091 13 H -0.287 1.287 14 H -0.276 1.276 15 H -0.275 1.275 16 N -0.674 5.674 17 C 0.037 3.963 18 C 0.150 3.850 19 H 0.070 0.930 20 C -0.163 4.163 21 H 0.059 0.941 22 H 0.056 0.944 23 H 0.056 0.944 24 H 0.065 0.935 25 H 0.079 0.921 26 H 0.266 0.734 27 H 0.369 0.631 28 H 0.074 0.926 29 H 0.023 0.977 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.662 -5.533 -8.889 11.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.017 4.017 3 N -0.346 5.346 4 C 0.320 3.680 5 O -0.434 6.434 6 C 0.096 3.904 7 H 0.046 0.954 8 C -0.525 4.525 9 H 0.087 0.913 10 C -0.135 4.135 11 N -0.544 5.544 12 Si 0.737 3.263 13 H -0.213 1.213 14 H -0.201 1.201 15 H -0.200 1.200 16 N -0.313 5.313 17 C -0.094 4.094 18 C 0.045 3.955 19 H 0.088 0.912 20 C -0.221 4.221 21 H 0.078 0.922 22 H 0.075 0.925 23 H 0.076 0.924 24 H 0.084 0.916 25 H 0.098 0.902 26 H 0.076 0.924 27 H 0.194 0.806 28 H 0.092 0.908 29 H 0.042 0.958 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.325 -6.199 -8.428 11.321 hybrid contribution -0.059 0.835 0.612 1.037 sum -4.385 -5.363 -7.816 10.445 Atomic orbital electron populations 1.22315 0.96722 1.01376 1.02488 1.21247 0.93853 0.84428 1.02208 1.47737 1.67022 1.13448 1.06347 1.21185 0.74581 0.90548 0.81703 1.90542 1.52628 1.65299 1.34947 1.19147 0.95901 0.86049 0.89298 0.95401 1.20855 1.20376 0.94934 1.16369 0.91285 1.24951 0.96819 0.95257 0.96436 1.69640 1.43244 0.99422 1.42106 0.86365 0.81518 0.76782 0.81633 1.21264 1.20132 1.20050 1.61318 1.40453 1.27022 1.02493 1.22255 0.95982 0.93494 0.97620 1.20977 0.97427 0.93602 0.83467 0.91218 1.22317 0.98983 1.01626 0.99160 0.92225 0.92497 0.92447 0.91625 0.90236 0.92432 0.80619 0.90776 0.95840 0.92171 0.91701 0.92161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.42 9.90 37.16 0.37 -2.06 16 2 C 0.11 1.73 5.32 -4.04 -0.02 1.71 16 3 N -0.61 -11.99 2.74 -166.97 -0.46 -12.45 16 4 C 0.53 13.06 7.10 -11.67 -0.08 12.98 16 5 O -0.56 -15.19 15.50 5.56 0.09 -15.10 16 6 C 0.21 5.44 2.61 -70.23 -0.18 5.25 16 7 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 8 C -0.49 -14.06 8.49 -34.44 -0.29 -14.36 16 9 H 0.07 2.09 7.39 -52.49 -0.39 1.70 16 10 C 0.07 1.86 5.38 -17.82 -0.10 1.76 16 11 N -0.90 -25.02 11.53 55.43 0.64 -24.38 16 12 Si 0.91 21.85 29.54 -169.99 -5.02 16.83 16 13 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 14 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 16 N -0.67 -15.82 6.46 -109.21 -0.71 -16.52 16 17 C 0.04 0.69 5.92 -3.68 -0.02 0.66 16 18 C 0.15 2.48 3.49 -68.20 -0.24 2.25 16 19 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 20 C -0.16 -2.00 7.69 37.16 0.29 -1.72 16 21 H 0.06 0.76 5.20 -51.93 -0.27 0.49 16 22 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 23 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.07 0.88 7.23 -51.93 -0.38 0.51 16 25 H 0.08 1.45 7.21 -51.93 -0.37 1.08 16 26 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 27 H 0.37 9.13 6.92 -39.30 -0.27 8.86 16 28 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.02 0.44 8.06 -51.93 -0.42 0.02 16 30 H 0.06 0.77 7.00 -51.93 -0.36 0.40 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.67 6.35 -51.93 -0.33 0.34 16 LS Contribution 255.51 15.07 3.85 3.85 Total: -1.00 -30.74 255.51 -6.35 -37.09 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -4.46 Total: 4.20 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: -0.28 Total: 6.49 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: -0.52 Total: -53.35 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: 0.09 Total: -15.10 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -30.74 -6.35 -37.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218982416.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.240 kcal (2) G-P(sol) polarization free energy of solvation -30.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds