Wall clock time and date at job start Mon Mar 30 2020 02:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.47353 * 2 1 4 4 C 1.46013 * 118.53245 * 270.01806 * 3 2 1 5 5 C 1.52980 * 110.03945 * 161.81689 * 4 3 2 6 6 H 1.08996 * 109.59275 * 170.06696 * 5 4 3 7 7 C 1.52997 * 109.59767 * 290.36981 * 5 4 3 8 8 N 1.47152 * 108.63994 * 50.32324 * 5 4 3 9 9 C 1.46896 * 110.19710 * 290.85548 * 8 5 4 10 10 H 1.08998 * 109.38852 * 290.34860 * 9 8 5 11 11 C 1.50701 * 109.39033 * 170.55427 * 9 8 5 12 12 H 1.07995 * 120.00057 * 266.41226 * 11 9 8 13 13 C 1.37874 * 120.00052 * 86.40311 * 11 9 8 14 14 N 1.31516 * 119.99813 * 353.40042 * 13 11 9 15 15 Si 1.86799 * 120.00059 * 173.39861 * 13 11 9 16 16 H 1.48499 * 109.47253 * 359.97438 * 15 13 11 17 17 H 1.48508 * 109.46992 * 240.00223 * 15 13 11 18 18 H 1.48500 * 109.47217 * 120.00657 * 15 13 11 19 19 C 1.33709 * 118.53784 * 90.00109 * 3 2 1 20 20 O 1.21283 * 118.62511 * 1.68331 * 19 3 2 21 21 H 1.09001 * 109.46788 * 59.99878 * 1 2 3 22 22 H 1.08987 * 109.47402 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46764 * 300.00439 * 1 2 3 24 24 H 1.08994 * 109.46964 * 239.99408 * 2 1 3 25 25 H 1.09001 * 109.46788 * 120.00122 * 2 1 3 26 26 H 1.08997 * 109.37939 * 281.99395 * 4 3 2 27 27 H 1.09000 * 109.37672 * 41.76134 * 4 3 2 28 28 H 1.08997 * 109.47167 * 59.99505 * 7 5 4 29 29 H 1.08997 * 109.47316 * 180.02562 * 7 5 4 30 30 H 1.09005 * 109.46637 * 300.00146 * 7 5 4 31 31 H 1.00903 * 110.91157 * 167.53239 * 8 5 4 32 32 H 0.96997 * 120.00126 * 354.59092 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2505 2.0389 -1.2828 5 6 2.3112 3.5554 -1.0910 6 1 2.6570 4.0266 -2.0110 7 6 0.9200 4.0837 -0.7355 8 7 3.2514 3.8542 0.0008 9 6 2.6953 3.4084 1.2853 10 1 1.8514 4.0437 1.5543 11 6 3.7559 3.5077 2.3512 12 1 4.3675 2.6492 2.5861 13 6 3.9457 4.6948 3.0263 14 7 3.2938 5.7746 2.6539 15 14 5.1287 4.7694 4.4700 16 1 5.7312 3.4294 4.6861 17 1 4.3932 5.1837 5.6918 18 1 6.2017 5.7543 4.1804 19 6 2.2314 1.9835 1.1746 20 8 2.0418 1.3534 2.1935 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0275 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 3.1937 1.6895 -1.7029 27 1 1.4376 1.7948 -1.9667 28 1 0.5783 3.6152 0.1874 29 1 0.9654 5.1643 -0.5998 30 1 0.2250 3.8480 -1.5416 31 1 3.4741 4.8380 0.0252 32 1 2.7402 5.7564 1.8576 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218982606.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:06 Heat of formation + Delta-G solvation = -34.347799 kcal Electronic energy + Delta-G solvation = -15096.121492 eV Core-core repulsion = 12670.486039 eV Total energy + Delta-G solvation = -2425.635452 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.86684 -36.38409 -35.08509 -32.83482 -30.19473 -29.69081 -26.62733 -25.87543 -23.76494 -22.17838 -20.86740 -17.68949 -17.07567 -16.14514 -15.93774 -14.81026 -14.45794 -14.26240 -13.74362 -13.50794 -13.26871 -12.64630 -12.31978 -12.18909 -11.96774 -11.61785 -11.46202 -11.07508 -10.85620 -10.74687 -10.73964 -10.38794 -10.09790 -9.06465 -8.62051 -8.48461 -8.08308 -7.48213 -6.48427 -4.18785 3.45184 3.48062 3.62683 3.66782 3.67880 4.50241 4.87163 5.14143 5.16121 5.35477 5.42817 5.53170 5.60538 5.67834 5.70149 5.78302 5.90308 6.05301 6.18120 6.20281 6.34083 6.39109 6.49130 6.75026 7.01949 7.52638 8.06721 8.24389 8.28678 8.42095 8.74029 9.14720 9.49630 10.89113 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.038206 B = 0.011114 C = 0.009494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.686609 B = 2518.800997 C = 2948.585355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.105 3.895 3 N -0.616 5.616 4 C 0.134 3.866 5 C 0.053 3.947 6 H 0.085 0.915 7 C -0.182 4.182 8 N -0.672 5.672 9 C 0.186 3.814 10 H 0.039 0.961 11 C -0.553 4.553 12 H 0.059 0.941 13 C 0.024 3.976 14 N -0.907 5.907 15 Si 1.081 2.919 16 H -0.287 1.287 17 H -0.285 1.285 18 H -0.287 1.287 19 C 0.532 3.468 20 O -0.549 6.549 21 H 0.050 0.950 22 H 0.059 0.941 23 H 0.057 0.943 24 H 0.066 0.934 25 H 0.081 0.919 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.343 0.657 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.789 -5.478 -9.224 11.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.019 4.019 3 N -0.351 5.351 4 C 0.010 3.990 5 C -0.058 4.058 6 H 0.103 0.897 7 C -0.242 4.242 8 N -0.307 5.307 9 C 0.077 3.923 10 H 0.056 0.944 11 C -0.593 4.593 12 H 0.077 0.923 13 C -0.181 4.181 14 N -0.544 5.544 15 Si 0.908 3.092 16 H -0.213 1.213 17 H -0.211 1.211 18 H -0.213 1.213 19 C 0.322 3.678 20 O -0.425 6.425 21 H 0.069 0.931 22 H 0.078 0.922 23 H 0.076 0.924 24 H 0.084 0.916 25 H 0.099 0.901 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.162 0.838 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.918 -5.386 -7.566 9.735 hybrid contribution -1.391 -0.314 -1.336 1.955 sum -4.310 -5.700 -8.903 11.416 Atomic orbital electron populations 1.22090 0.96653 1.01416 1.01989 1.21302 0.93873 0.84243 1.02450 1.47680 1.67238 1.13661 1.06545 1.21347 1.00040 0.92567 0.85038 1.21942 0.91960 0.94353 0.97533 0.89719 1.22497 0.98423 1.01388 1.01849 1.61888 1.41225 1.23840 1.03702 1.19391 0.96671 0.87526 0.88750 0.94384 1.21632 1.19337 1.00104 1.18241 0.92315 1.25990 0.98772 0.91815 1.01477 1.70838 1.28375 1.29447 1.25739 0.83374 0.75325 0.75382 0.75071 1.21264 1.21138 1.21344 1.20996 0.74812 0.90233 0.81747 1.90556 1.52071 1.64902 1.34943 0.93073 0.92199 0.92379 0.91566 0.90061 0.92069 0.91959 0.92466 0.92483 0.92946 0.83816 0.92569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 10.23 37.16 0.38 -1.92 16 2 C 0.10 1.69 6.01 -4.04 -0.02 1.66 16 3 N -0.62 -11.87 2.71 -174.58 -0.47 -12.34 16 4 C 0.13 2.13 5.94 -4.32 -0.03 2.10 16 5 C 0.05 0.90 3.72 -67.59 -0.25 0.65 16 6 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 7 C -0.18 -3.01 8.60 37.16 0.32 -2.69 16 8 N -0.67 -14.67 6.38 -102.25 -0.65 -15.33 16 9 C 0.19 4.74 1.60 -70.23 -0.11 4.62 16 10 H 0.04 1.06 5.70 -51.93 -0.30 0.76 16 11 C -0.55 -16.00 8.19 -34.44 -0.28 -16.28 16 12 H 0.06 1.79 7.82 -52.49 -0.41 1.38 16 13 C 0.02 0.67 5.45 -17.82 -0.10 0.58 16 14 N -0.91 -26.37 13.56 55.43 0.75 -25.62 16 15 Si 1.08 25.72 29.91 -169.99 -5.08 20.64 16 16 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 19 C 0.53 13.01 6.27 -11.67 -0.07 12.94 16 20 O -0.55 -15.13 15.75 5.55 0.09 -15.04 16 21 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.06 0.69 8.14 -51.94 -0.42 0.27 16 23 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.07 0.86 8.03 -51.93 -0.42 0.45 16 25 H 0.08 1.47 7.21 -51.93 -0.37 1.10 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.06 0.80 8.10 -51.93 -0.42 0.38 16 28 H 0.06 1.10 5.75 -51.93 -0.30 0.81 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.34 7.65 8.18 -39.29 -0.32 7.33 16 32 H 0.26 7.45 6.25 -40.82 -0.26 7.19 16 LS Contribution 259.65 15.07 3.91 3.91 Total: -1.00 -32.11 259.65 -6.17 -38.28 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -4.55 Total: 3.82 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -0.17 Total: 1.67 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: -0.37 Total: -53.28 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: 0.09 Total: -15.04 kcal Atomic # 14 Polarization: 25.72 SS G_CDS: -5.08 Total: 20.64 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -32.11 -6.17 -38.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218982606.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.931 kcal (2) G-P(sol) polarization free energy of solvation -32.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds