Wall clock time and date at job start Mon Mar 30 2020 02:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.47353 * 2 1 4 4 C 1.46013 * 118.53245 * 270.01806 * 3 2 1 5 5 C 1.52980 * 110.03945 * 161.81689 * 4 3 2 6 6 H 1.08996 * 109.59275 * 170.06696 * 5 4 3 7 7 C 1.52997 * 109.59767 * 290.36981 * 5 4 3 8 8 N 1.47152 * 108.63994 * 50.32324 * 5 4 3 9 9 C 1.46896 * 110.19710 * 290.85548 * 8 5 4 10 10 H 1.08998 * 109.38852 * 290.34860 * 9 8 5 11 11 C 1.50701 * 109.39033 * 170.55427 * 9 8 5 12 12 H 1.07995 * 120.00057 * 266.41226 * 11 9 8 13 13 C 1.37874 * 120.00052 * 86.40311 * 11 9 8 14 14 N 1.31516 * 119.99813 * 353.40042 * 13 11 9 15 15 Si 1.86799 * 120.00059 * 173.39861 * 13 11 9 16 16 H 1.48499 * 109.47253 * 359.97438 * 15 13 11 17 17 H 1.48508 * 109.46992 * 240.00223 * 15 13 11 18 18 H 1.48500 * 109.47217 * 120.00657 * 15 13 11 19 19 C 1.33709 * 118.53784 * 90.00109 * 3 2 1 20 20 O 1.21283 * 118.62511 * 1.68331 * 19 3 2 21 21 H 1.09001 * 109.46788 * 59.99878 * 1 2 3 22 22 H 1.08987 * 109.47402 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46764 * 300.00439 * 1 2 3 24 24 H 1.08994 * 109.46964 * 239.99408 * 2 1 3 25 25 H 1.09001 * 109.46788 * 120.00122 * 2 1 3 26 26 H 1.08997 * 109.37939 * 281.99395 * 4 3 2 27 27 H 1.09000 * 109.37672 * 41.76134 * 4 3 2 28 28 H 1.08997 * 109.47167 * 59.99505 * 7 5 4 29 29 H 1.08997 * 109.47316 * 180.02562 * 7 5 4 30 30 H 1.09005 * 109.46637 * 300.00146 * 7 5 4 31 31 H 1.00903 * 110.91157 * 167.53239 * 8 5 4 32 32 H 0.96997 * 120.00126 * 354.59092 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2505 2.0389 -1.2828 5 6 2.3112 3.5554 -1.0910 6 1 2.6570 4.0266 -2.0110 7 6 0.9200 4.0837 -0.7355 8 7 3.2514 3.8542 0.0008 9 6 2.6953 3.4084 1.2853 10 1 1.8514 4.0437 1.5543 11 6 3.7559 3.5077 2.3512 12 1 4.3675 2.6492 2.5861 13 6 3.9457 4.6948 3.0263 14 7 3.2938 5.7746 2.6539 15 14 5.1287 4.7694 4.4700 16 1 5.7312 3.4294 4.6861 17 1 4.3932 5.1837 5.6918 18 1 6.2017 5.7543 4.1804 19 6 2.2314 1.9835 1.1746 20 8 2.0418 1.3534 2.1935 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0275 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 3.1937 1.6895 -1.7029 27 1 1.4376 1.7948 -1.9667 28 1 0.5783 3.6152 0.1874 29 1 0.9654 5.1643 -0.5998 30 1 0.2250 3.8480 -1.5416 31 1 3.4741 4.8380 0.0252 32 1 2.7402 5.7564 1.8576 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218982606.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:06 Heat of formation + Delta-G solvation = -58.815633 kcal Electronic energy + Delta-G solvation = -15097.182497 eV Core-core repulsion = 12670.486039 eV Total energy + Delta-G solvation = -2426.696457 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.56393 -38.12410 -36.77373 -34.75172 -31.63177 -31.36826 -28.28782 -27.51654 -25.49794 -23.86486 -22.34024 -19.62105 -18.74172 -17.83643 -17.65698 -16.55389 -16.08316 -15.75742 -15.66485 -15.06084 -14.67290 -14.12989 -13.94850 -13.87343 -13.55682 -13.04906 -12.93326 -12.74797 -12.56119 -12.41300 -12.13522 -11.98156 -11.79041 -11.10162 -10.67626 -10.46952 -9.63168 -9.25806 -8.73519 -6.43983 1.50588 1.58812 1.75302 1.79987 2.14672 2.52823 2.99606 3.50145 3.79266 3.85218 4.12514 4.22735 4.27929 4.33137 4.46989 4.51326 4.54026 4.75177 4.80139 4.89035 4.90289 4.99465 5.18977 5.24417 5.47071 5.73645 6.04674 6.18295 6.44078 6.55235 6.62856 7.24433 7.38189 8.66175 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.038206 B = 0.011114 C = 0.009494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.686609 B = 2518.800997 C = 2948.585355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.098 3.902 3 N -0.607 5.607 4 C 0.126 3.874 5 C 0.048 3.952 6 H 0.124 0.876 7 C -0.175 4.175 8 N -0.677 5.677 9 C 0.191 3.809 10 H 0.010 0.990 11 C -0.578 4.578 12 H 0.030 0.970 13 C -0.017 4.017 14 N -0.923 5.923 15 Si 1.121 2.879 16 H -0.285 1.285 17 H -0.278 1.278 18 H -0.268 1.268 19 C 0.524 3.476 20 O -0.597 6.597 21 H 0.072 0.928 22 H 0.088 0.912 23 H 0.021 0.979 24 H 0.110 0.890 25 H 0.052 0.948 26 H 0.076 0.924 27 H 0.111 0.889 28 H 0.020 0.980 29 H 0.049 0.951 30 H 0.091 0.909 31 H 0.337 0.663 32 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.042 -6.106 -11.695 13.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.024 4.024 3 N -0.340 5.340 4 C 0.004 3.996 5 C -0.062 4.062 6 H 0.141 0.859 7 C -0.234 4.234 8 N -0.310 5.310 9 C 0.081 3.919 10 H 0.027 0.973 11 C -0.617 4.617 12 H 0.049 0.951 13 C -0.217 4.217 14 N -0.560 5.560 15 Si 0.943 3.057 16 H -0.210 1.210 17 H -0.203 1.203 18 H -0.193 1.193 19 C 0.313 3.687 20 O -0.477 6.477 21 H 0.091 0.909 22 H 0.107 0.893 23 H 0.041 0.959 24 H 0.129 0.871 25 H 0.071 0.929 26 H 0.094 0.906 27 H 0.129 0.871 28 H 0.039 0.961 29 H 0.068 0.932 30 H 0.110 0.890 31 H 0.155 0.845 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.187 -6.026 -10.121 12.202 hybrid contribution -1.371 -0.174 -0.704 1.551 sum -4.557 -6.200 -10.825 13.281 Atomic orbital electron populations 1.22021 0.94810 1.03157 1.01238 1.21597 0.95380 0.82244 1.03205 1.47687 1.65284 1.14863 1.06174 1.21736 1.02768 0.91300 0.83837 1.22242 0.91157 0.95826 0.96950 0.85852 1.22413 0.98926 1.00598 1.01452 1.61601 1.42728 1.23309 1.03331 1.19082 0.94637 0.88330 0.89840 0.97303 1.21790 1.20116 0.99292 1.20497 0.95127 1.27221 0.99675 0.91393 1.03391 1.70911 1.29290 1.29795 1.25990 0.82874 0.74256 0.75903 0.72707 1.21027 1.20331 1.19320 1.20777 0.75070 0.89907 0.82938 1.90514 1.54455 1.65781 1.36992 0.90871 0.89274 0.95948 0.87146 0.92904 0.90612 0.87146 0.96053 0.93169 0.89020 0.84522 0.93118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.94 10.23 71.98 0.74 -3.20 16 2 C 0.10 2.93 6.01 86.38 0.52 3.45 16 3 N -0.61 -22.43 2.71 -825.24 -2.24 -24.67 16 4 C 0.13 3.48 5.94 86.46 0.51 4.00 16 5 C 0.05 1.50 3.72 44.86 0.17 1.67 16 6 H 0.12 2.97 8.14 -2.39 -0.02 2.95 16 7 C -0.17 -5.42 8.60 71.98 0.62 -4.80 16 8 N -0.68 -29.39 6.38 -477.40 -3.04 -32.43 16 9 C 0.19 10.09 1.60 43.29 0.07 10.16 16 10 H 0.01 0.56 5.70 -2.39 -0.01 0.55 16 11 C -0.58 -34.73 8.19 25.60 0.21 -34.52 16 12 H 0.03 1.95 7.82 -2.91 -0.02 1.93 16 13 C -0.02 -1.00 5.45 84.65 0.46 -0.54 16 14 N -0.92 -54.86 13.56 21.45 0.29 -54.57 16 15 Si 1.12 52.62 29.91 68.60 2.05 54.67 16 16 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 17 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 18 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 19 C 0.52 26.20 6.27 87.68 0.55 26.75 16 20 O -0.60 -34.46 15.75 -3.04 -0.05 -34.51 16 21 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 22 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 23 H 0.02 0.71 8.14 -2.39 -0.02 0.70 16 24 H 0.11 2.37 8.03 -2.39 -0.02 2.35 16 25 H 0.05 1.90 7.21 -2.39 -0.02 1.88 16 26 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.11 2.12 8.10 -2.39 -0.02 2.10 16 28 H 0.02 0.80 5.75 -2.39 -0.01 0.78 16 29 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 31 H 0.34 15.15 8.18 -89.69 -0.73 14.41 16 32 H 0.26 15.11 6.25 -92.71 -0.58 14.53 16 Total: -1.00 -74.21 259.65 1.42 -72.79 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: 0.57 Total: 15.76 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: 3.84 Total: 2.95 kcal Atomic # 7 Polarization: -106.67 SS G_CDS: -4.99 Total: -111.67 kcal Atomic # 8 Polarization: -34.46 SS G_CDS: -0.05 Total: -34.51 kcal Atomic # 14 Polarization: 52.62 SS G_CDS: 2.05 Total: 54.67 kcal Total: -74.21 1.42 -72.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218982606.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.973 kcal (2) G-P(sol) polarization free energy of solvation -74.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds