Wall clock time and date at job start Mon Mar 30 2020 02:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.47431 * 2 1 4 4 C 1.47246 * 120.07701 * 269.97673 * 3 2 1 5 5 C 1.53103 * 108.40449 * 250.01409 * 4 3 2 6 6 C 1.51690 * 110.75553 * 274.41484 * 5 4 3 7 7 N 1.45755 * 113.93906 * 66.76515 * 6 5 4 8 8 C 1.46873 * 112.43720 * 292.28600 * 7 6 5 9 9 H 1.08997 * 109.73841 * 325.94335 * 8 7 6 10 10 C 1.50706 * 109.60108 * 205.53983 * 8 7 6 11 11 H 1.07997 * 119.99988 * 275.87978 * 10 8 7 12 12 C 1.37874 * 120.00020 * 95.88042 * 10 8 7 13 13 N 1.31511 * 120.00002 * 184.90957 * 12 10 8 14 14 Si 1.86802 * 120.00046 * 4.90597 * 12 10 8 15 15 H 1.48502 * 109.47237 * 84.81739 * 14 12 10 16 16 H 1.48500 * 109.47147 * 204.81938 * 14 12 10 17 17 H 1.48507 * 109.47311 * 324.82272 * 14 12 10 18 18 C 1.33617 * 120.07398 * 89.99805 * 3 2 1 19 19 O 1.21285 * 119.88003 * 0.51982 * 18 3 2 20 20 H 1.09000 * 109.47297 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47034 * 299.99995 * 1 2 3 22 22 H 1.09006 * 109.46563 * 59.99802 * 1 2 3 23 23 H 1.09001 * 109.47526 * 239.99899 * 2 1 3 24 24 H 1.09002 * 109.47282 * 120.00153 * 2 1 3 25 25 H 1.09002 * 109.67373 * 9.74494 * 4 3 2 26 26 H 1.09001 * 109.67383 * 130.24444 * 4 3 2 27 27 H 1.09000 * 109.22160 * 34.73659 * 5 4 3 28 28 H 1.08995 * 109.22138 * 154.08198 * 5 4 3 29 29 H 1.08999 * 108.59050 * 187.92115 * 6 5 4 30 30 H 1.09003 * 108.58739 * 305.75804 * 6 5 4 31 31 H 1.00898 * 110.99908 * 167.26926 * 7 6 5 32 32 H 0.97002 * 120.00019 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2649 2.0768 -1.2742 5 6 3.7761 2.2551 -1.4431 6 6 4.2508 3.5131 -0.7409 7 7 4.1338 3.4600 0.7109 8 6 2.7356 3.4436 1.1604 9 1 2.1249 4.0432 0.4855 10 6 2.6466 4.0051 2.5561 11 1 2.8324 3.3673 3.4076 12 6 2.3280 5.3330 2.7460 13 7 2.3447 5.8467 3.9565 14 14 1.8728 6.4026 1.2837 15 1 0.4272 6.2419 0.9838 16 1 2.1570 7.8247 1.6031 17 1 2.6721 5.9913 0.1016 18 6 2.2416 2.0125 1.1563 19 8 2.0481 1.4368 2.2061 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5139 0.8900 25 1 1.8709 1.4827 -2.0988 26 1 1.7789 3.0523 -1.2598 27 1 4.2890 1.3921 -1.0185 28 1 4.0127 2.3256 -2.5047 29 1 5.2961 3.6820 -0.9994 30 1 3.6634 4.3564 -1.1043 31 1 4.6435 4.2162 1.1426 32 1 2.1202 6.7808 4.0901 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218983503.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:14 Heat of formation + Delta-G solvation = -57.780028 kcal Electronic energy + Delta-G solvation = -15045.768961 eV Core-core repulsion = 12619.117411 eV Total energy + Delta-G solvation = -2426.651550 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.15765 -37.72343 -36.75322 -34.66513 -32.68676 -31.65819 -29.04992 -25.92977 -25.71181 -23.44901 -21.70549 -19.68613 -19.26564 -18.06330 -17.47360 -16.58872 -16.13127 -15.84174 -15.30579 -14.88445 -14.72545 -14.57152 -14.04356 -13.71076 -13.45119 -13.20694 -12.88888 -12.85990 -12.43230 -12.14672 -11.90011 -11.84452 -11.67003 -11.37965 -10.95499 -10.60344 -9.57336 -9.12713 -8.37333 -6.47577 1.24679 1.29275 1.39046 1.88064 2.22891 2.24412 2.92839 3.58166 3.93791 4.03378 4.11127 4.27638 4.35808 4.41639 4.53283 4.57060 4.71363 4.78224 4.80516 4.94992 5.01052 5.08586 5.25142 5.29648 5.40969 5.81514 6.10929 6.35432 6.56090 6.67086 6.81027 7.17352 7.52713 8.80019 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.031177 B = 0.012840 C = 0.011018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.874329 B = 2180.086265 C = 2540.671188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.105 3.895 3 N -0.615 5.615 4 C 0.103 3.897 5 C -0.129 4.129 6 C 0.045 3.955 7 N -0.700 5.700 8 C 0.187 3.813 9 H 0.035 0.965 10 C -0.516 4.516 11 H 0.025 0.975 12 C 0.018 3.982 13 N -0.937 5.937 14 Si 0.948 3.052 15 H -0.268 1.268 16 H -0.277 1.277 17 H -0.236 1.236 18 C 0.524 3.476 19 O -0.591 6.591 20 H 0.087 0.913 21 H 0.020 0.980 22 H 0.071 0.929 23 H 0.114 0.886 24 H 0.050 0.950 25 H 0.126 0.874 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.118 0.882 29 H 0.086 0.914 30 H 0.023 0.977 31 H 0.349 0.651 32 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.254 -5.845 -18.526 19.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.016 4.016 3 N -0.349 5.349 4 C -0.019 4.019 5 C -0.168 4.168 6 C -0.084 4.084 7 N -0.336 5.336 8 C 0.077 3.923 9 H 0.052 0.948 10 C -0.555 4.555 11 H 0.043 0.957 12 C -0.182 4.182 13 N -0.575 5.575 14 Si 0.770 3.230 15 H -0.193 1.193 16 H -0.203 1.203 17 H -0.159 1.159 18 C 0.312 3.688 19 O -0.470 6.470 20 H 0.105 0.895 21 H 0.039 0.961 22 H 0.090 0.910 23 H 0.132 0.868 24 H 0.069 0.931 25 H 0.144 0.856 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.136 0.864 29 H 0.105 0.895 30 H 0.041 0.959 31 H 0.169 0.831 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.324 -6.681 -17.874 19.085 hybrid contribution -0.486 1.538 0.425 1.668 sum -0.810 -5.143 -17.449 18.209 Atomic orbital electron populations 1.22087 0.95442 1.03008 1.01237 1.21553 0.94852 0.82089 1.03149 1.48241 1.65679 1.14544 1.06441 1.22131 0.96786 0.97934 0.85037 1.21853 0.95065 0.97798 1.02063 1.21726 1.01878 0.97418 0.87331 1.59662 1.12888 1.53092 1.07994 1.19386 0.88316 0.89505 0.95122 0.94777 1.20895 1.48004 0.95122 0.91454 0.95662 1.26065 0.94020 0.98856 0.99244 1.70058 1.48759 1.14847 1.23859 0.85760 0.79808 0.77727 0.79710 1.19268 1.20278 1.15883 1.21236 0.75233 0.89388 0.82936 1.90526 1.53961 1.68477 1.34014 0.89452 0.96059 0.90959 0.86828 0.93139 0.85642 0.92024 0.91879 0.86395 0.89545 0.95915 0.83072 0.91956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.10 10.24 71.98 0.74 -3.36 16 2 C 0.11 3.01 6.08 86.38 0.53 3.53 16 3 N -0.62 -21.41 2.48 -820.46 -2.03 -23.45 16 4 C 0.10 2.53 5.92 86.27 0.51 3.05 16 5 C -0.13 -3.00 5.86 30.20 0.18 -2.83 16 6 C 0.05 1.35 5.93 86.09 0.51 1.86 16 7 N -0.70 -29.28 6.38 -503.26 -3.21 -32.49 16 8 C 0.19 9.13 1.80 43.65 0.08 9.21 16 9 H 0.03 1.59 3.82 -2.39 -0.01 1.58 16 10 C -0.52 -31.44 8.43 25.60 0.22 -31.23 16 11 H 0.02 1.83 7.52 -2.91 -0.02 1.80 16 12 C 0.02 1.03 5.47 84.65 0.46 1.49 16 13 N -0.94 -59.31 13.96 21.45 0.30 -59.01 16 14 Si 0.95 42.42 26.99 68.60 1.85 44.27 16 15 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 16 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 17 H -0.24 -9.21 6.29 99.48 0.63 -8.58 16 18 C 0.52 25.34 7.05 88.06 0.62 25.96 16 19 O -0.59 -34.50 15.32 -3.05 -0.05 -34.55 16 20 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 21 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 22 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 23 H 0.11 2.18 8.03 -2.39 -0.02 2.16 16 24 H 0.05 1.74 7.40 -2.39 -0.02 1.72 16 25 H 0.13 1.93 7.92 -2.39 -0.02 1.91 16 26 H 0.06 1.63 6.77 -2.39 -0.02 1.62 16 27 H 0.06 1.67 8.05 -2.39 -0.02 1.65 16 28 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.02 0.67 7.25 -2.39 -0.02 0.65 16 31 H 0.35 15.09 8.41 -89.70 -0.75 14.33 16 32 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 Total: -1.00 -79.25 256.60 0.98 -78.27 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: 0.28 Total: 19.27 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: 3.84 Total: 7.68 kcal Atomic # 7 Polarization: -110.00 SS G_CDS: -4.95 Total: -114.94 kcal Atomic # 8 Polarization: -34.50 SS G_CDS: -0.05 Total: -34.55 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 1.85 Total: 44.27 kcal Total: -79.25 0.98 -78.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218983503.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.489 kcal (2) G-P(sol) polarization free energy of solvation -79.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds