Wall clock time and date at job start Mon Mar 30 2020 02:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46496 * 109.46961 * 2 1 4 4 C 1.47243 * 120.07752 * 270.01766 * 3 2 1 5 5 C 1.53067 * 108.41333 * 249.98901 * 4 3 2 6 6 C 1.51677 * 110.76541 * 274.41920 * 5 4 3 7 7 N 1.45755 * 113.94042 * 66.75538 * 6 5 4 8 8 C 1.46883 * 112.43978 * 292.29109 * 7 6 5 9 9 H 1.09000 * 109.59675 * 205.53941 * 8 7 6 10 10 C 1.50697 * 109.59663 * 326.01572 * 8 7 6 11 11 H 1.07990 * 120.00765 * 354.54841 * 10 8 7 12 12 C 1.37878 * 119.99563 * 174.54763 * 10 8 7 13 13 N 1.31517 * 120.00104 * 359.97438 * 12 10 8 14 14 Si 1.86801 * 120.00137 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47385 * 59.99631 * 14 12 10 16 16 H 1.48500 * 109.47512 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47000 * 299.99953 * 14 12 10 18 18 C 1.33616 * 120.07453 * 90.00406 * 3 2 1 19 19 O 1.21275 * 119.88615 * 0.52993 * 18 3 2 20 20 H 1.09002 * 109.47036 * 59.99828 * 1 2 3 21 21 H 1.09005 * 109.47358 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47126 * 299.99731 * 1 2 3 23 23 H 1.09001 * 109.47126 * 240.00269 * 2 1 3 24 24 H 1.09002 * 109.47036 * 120.00172 * 2 1 3 25 25 H 1.09000 * 109.67761 * 9.70784 * 4 3 2 26 26 H 1.09005 * 109.67892 * 130.20801 * 4 3 2 27 27 H 1.09001 * 109.22574 * 154.07902 * 5 4 3 28 28 H 1.09008 * 109.21049 * 34.74657 * 5 4 3 29 29 H 1.09002 * 108.58875 * 305.60943 * 6 5 4 30 30 H 1.08997 * 108.59370 * 187.91148 * 6 5 4 31 31 H 1.00906 * 110.99342 * 57.30280 * 7 6 5 32 32 H 0.97005 * 120.00020 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2639 2.0771 -1.2742 5 6 3.7745 2.2562 -1.4439 6 6 4.2491 3.5141 -0.7419 7 7 4.1330 3.4608 0.7101 8 6 2.7350 3.4438 1.1604 9 1 2.6712 3.8497 2.1700 10 6 1.8924 4.2719 0.2248 11 1 2.3609 4.8341 -0.5693 12 6 0.5233 4.3116 0.3827 13 7 -0.0473 3.6265 1.3495 14 14 -0.5213 5.3375 -0.7773 15 1 -0.3346 4.8550 -2.1693 16 1 -1.9515 5.2116 -0.3980 17 1 -0.1083 6.7610 -0.6874 18 6 2.2415 2.0125 1.1563 19 8 2.0484 1.4368 2.2061 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 1.8700 1.4829 -2.0987 26 1 1.7773 3.0524 -1.2595 27 1 4.0105 2.3270 -2.5057 28 1 4.2879 1.3931 -1.0198 29 1 3.6630 4.3577 -1.1065 30 1 5.2943 3.6834 -1.0008 31 1 4.6432 2.6751 1.0849 32 1 -1.0106 3.6548 1.4608 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218983535.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:17 Heat of formation + Delta-G solvation = -22.991578 kcal Electronic energy + Delta-G solvation = -15595.920106 eV Core-core repulsion = 13170.777096 eV Total energy + Delta-G solvation = -2425.143010 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.37716 -35.94630 -34.56930 -32.67603 -30.79297 -29.61001 -26.79390 -24.49387 -23.46050 -22.14042 -20.14149 -17.94238 -17.14141 -15.65293 -15.27735 -14.81245 -14.32789 -13.78323 -13.63645 -13.27711 -12.54355 -12.46014 -12.12076 -11.79130 -11.68156 -11.32727 -11.08564 -10.96954 -10.88240 -10.63200 -10.26903 -10.10765 -9.98004 -9.33370 -8.66115 -8.50014 -7.53733 -7.25635 -6.20285 -4.22890 3.18259 3.26589 3.26814 4.04362 4.22724 4.33898 5.10129 5.40390 5.56266 5.59901 5.73407 5.90344 5.97908 6.03972 6.21089 6.27536 6.39487 6.42485 6.54781 6.72385 6.74267 6.91906 7.12378 7.30927 7.60781 7.73314 7.80350 8.04402 8.45967 8.67692 8.82440 9.32588 9.71656 10.85172 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.024361 B = 0.017955 C = 0.014384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.081619 B = 1559.054940 C = 1946.110713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.115 3.885 3 N -0.602 5.602 4 C 0.092 3.908 5 C -0.163 4.163 6 C 0.058 3.942 7 N -0.676 5.676 8 C 0.204 3.796 9 H 0.071 0.929 10 C -0.531 4.531 11 H 0.080 0.920 12 C 0.066 3.934 13 N -0.860 5.860 14 Si 0.892 3.108 15 H -0.274 1.274 16 H -0.286 1.286 17 H -0.273 1.273 18 C 0.525 3.475 19 O -0.579 6.579 20 H 0.047 0.953 21 H 0.047 0.953 22 H 0.067 0.933 23 H 0.055 0.945 24 H 0.069 0.931 25 H 0.049 0.951 26 H 0.130 0.870 27 H 0.062 0.938 28 H 0.048 0.952 29 H 0.091 0.909 30 H 0.048 0.952 31 H 0.321 0.679 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.342 -3.344 -7.227 8.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.009 4.009 3 N -0.335 5.335 4 C -0.030 4.030 5 C -0.204 4.204 6 C -0.072 4.072 7 N -0.305 5.305 8 C 0.093 3.907 9 H 0.088 0.912 10 C -0.569 4.569 11 H 0.098 0.902 12 C -0.141 4.141 13 N -0.495 5.495 14 Si 0.719 3.281 15 H -0.199 1.199 16 H -0.212 1.212 17 H -0.198 1.198 18 C 0.313 3.687 19 O -0.457 6.457 20 H 0.067 0.933 21 H 0.066 0.934 22 H 0.086 0.914 23 H 0.074 0.926 24 H 0.087 0.913 25 H 0.067 0.933 26 H 0.147 0.853 27 H 0.081 0.919 28 H 0.067 0.933 29 H 0.109 0.891 30 H 0.067 0.933 31 H 0.137 0.863 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.095 -3.008 -6.487 7.792 hybrid contribution -1.117 -0.584 -0.930 1.566 sum 1.978 -3.591 -7.417 8.475 Atomic orbital electron populations 1.22065 0.96737 1.00127 1.02892 1.21166 0.94166 0.84716 1.00812 1.47684 1.66461 1.12265 1.07080 1.22410 0.95056 1.01495 0.84056 1.22395 0.97764 0.99831 1.00408 1.21544 0.99327 0.97827 0.88510 1.60270 1.14286 1.47202 1.08716 1.19674 0.83639 0.88223 0.99163 0.91152 1.21021 0.91069 1.29338 1.15449 0.90198 1.25080 0.98113 0.95273 0.95634 1.69966 1.11161 1.38768 1.29576 0.86641 0.79455 0.81047 0.80938 1.19917 1.21159 1.19784 1.22245 0.74968 0.89693 0.81755 1.90476 1.54237 1.68822 1.32149 0.93349 0.93448 0.91394 0.92628 0.91256 0.93253 0.85291 0.91934 0.93313 0.89108 0.93333 0.86338 0.92302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.03 10.24 37.16 0.38 -2.65 16 2 C 0.12 2.22 6.08 -4.04 -0.02 2.20 16 3 N -0.60 -13.14 2.47 -173.08 -0.43 -13.57 16 4 C 0.09 1.78 5.85 -3.60 -0.02 1.76 16 5 C -0.16 -2.74 5.85 -27.37 -0.16 -2.90 16 6 C 0.06 1.05 5.82 -5.11 -0.03 1.02 16 7 N -0.68 -14.21 6.70 -110.42 -0.74 -14.95 16 8 C 0.20 5.10 3.20 -69.68 -0.22 4.88 16 9 H 0.07 2.00 8.13 -51.93 -0.42 1.58 16 10 C -0.53 -13.22 4.92 -34.44 -0.17 -13.38 16 11 H 0.08 1.90 5.16 -52.49 -0.27 1.63 16 12 C 0.07 1.68 4.84 -17.82 -0.09 1.60 16 13 N -0.86 -24.03 12.13 55.43 0.67 -23.35 16 14 Si 0.89 19.79 29.53 -169.99 -5.02 14.77 16 15 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 16 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 18 C 0.52 13.34 4.92 -11.16 -0.05 13.29 16 19 O -0.58 -16.67 16.63 5.56 0.09 -16.58 16 20 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 21 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 22 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 23 H 0.06 0.90 8.03 -51.93 -0.42 0.48 16 24 H 0.07 1.41 7.40 -51.93 -0.38 1.03 16 25 H 0.05 0.84 7.92 -51.93 -0.41 0.43 16 26 H 0.13 2.82 4.16 -51.93 -0.22 2.60 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.05 0.83 8.05 -51.92 -0.42 0.41 16 29 H 0.09 1.74 5.19 -51.93 -0.27 1.47 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.32 6.45 8.51 -39.29 -0.33 6.12 16 32 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 252.07 15.07 3.80 3.80 Total: -1.00 -29.44 252.07 -6.40 -35.85 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -4.39 Total: 8.23 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: -0.39 Total: 5.80 kcal Atomic # 7 Polarization: -51.37 SS G_CDS: -0.50 Total: -51.87 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: 0.09 Total: -16.58 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -29.44 -6.40 -35.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218983535.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.855 kcal (2) G-P(sol) polarization free energy of solvation -29.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds