Wall clock time and date at job start Mon Mar 30 2020 02:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46496 * 109.46961 * 2 1 4 4 C 1.47243 * 120.07752 * 270.01766 * 3 2 1 5 5 C 1.53067 * 108.41333 * 249.98901 * 4 3 2 6 6 C 1.51677 * 110.76541 * 274.41920 * 5 4 3 7 7 N 1.45755 * 113.94042 * 66.75538 * 6 5 4 8 8 C 1.46883 * 112.43978 * 292.29109 * 7 6 5 9 9 H 1.09000 * 109.59675 * 205.53941 * 8 7 6 10 10 C 1.50697 * 109.59663 * 326.01572 * 8 7 6 11 11 H 1.07990 * 120.00765 * 354.54841 * 10 8 7 12 12 C 1.37878 * 119.99563 * 174.54763 * 10 8 7 13 13 N 1.31517 * 120.00104 * 359.97438 * 12 10 8 14 14 Si 1.86801 * 120.00137 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47385 * 59.99631 * 14 12 10 16 16 H 1.48500 * 109.47512 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47000 * 299.99953 * 14 12 10 18 18 C 1.33616 * 120.07453 * 90.00406 * 3 2 1 19 19 O 1.21275 * 119.88615 * 0.52993 * 18 3 2 20 20 H 1.09002 * 109.47036 * 59.99828 * 1 2 3 21 21 H 1.09005 * 109.47358 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47126 * 299.99731 * 1 2 3 23 23 H 1.09001 * 109.47126 * 240.00269 * 2 1 3 24 24 H 1.09002 * 109.47036 * 120.00172 * 2 1 3 25 25 H 1.09000 * 109.67761 * 9.70784 * 4 3 2 26 26 H 1.09005 * 109.67892 * 130.20801 * 4 3 2 27 27 H 1.09001 * 109.22574 * 154.07902 * 5 4 3 28 28 H 1.09008 * 109.21049 * 34.74657 * 5 4 3 29 29 H 1.09002 * 108.58875 * 305.60943 * 6 5 4 30 30 H 1.08997 * 108.59370 * 187.91148 * 6 5 4 31 31 H 1.00906 * 110.99342 * 57.30280 * 7 6 5 32 32 H 0.97005 * 120.00020 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2639 2.0771 -1.2742 5 6 3.7745 2.2562 -1.4439 6 6 4.2491 3.5141 -0.7419 7 7 4.1330 3.4608 0.7101 8 6 2.7350 3.4438 1.1604 9 1 2.6712 3.8497 2.1700 10 6 1.8924 4.2719 0.2248 11 1 2.3609 4.8341 -0.5693 12 6 0.5233 4.3116 0.3827 13 7 -0.0473 3.6265 1.3495 14 14 -0.5213 5.3375 -0.7773 15 1 -0.3346 4.8550 -2.1693 16 1 -1.9515 5.2116 -0.3980 17 1 -0.1083 6.7610 -0.6874 18 6 2.2415 2.0125 1.1563 19 8 2.0484 1.4368 2.2061 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 1.8700 1.4829 -2.0987 26 1 1.7773 3.0524 -1.2595 27 1 4.0105 2.3270 -2.5057 28 1 4.2879 1.3931 -1.0198 29 1 3.6630 4.3577 -1.1065 30 1 5.2943 3.6834 -1.0008 31 1 4.6432 2.6751 1.0849 32 1 -1.0106 3.6548 1.4608 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218983535.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:17 Heat of formation + Delta-G solvation = -45.019741 kcal Electronic energy + Delta-G solvation = -15596.875318 eV Core-core repulsion = 13170.777096 eV Total energy + Delta-G solvation = -2426.098223 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.17433 -37.75908 -36.31600 -34.59075 -32.37677 -31.31739 -28.64166 -26.18795 -25.21308 -23.73910 -21.81485 -19.71128 -18.95897 -17.35469 -17.07146 -16.72829 -16.03617 -15.52405 -15.26791 -14.83444 -14.32398 -14.17209 -13.78555 -13.52993 -13.28943 -12.95200 -12.80381 -12.72906 -12.47390 -12.32380 -11.92808 -11.74468 -11.67277 -11.12264 -10.57911 -10.39892 -9.28948 -8.99887 -8.17687 -6.25242 1.43507 1.46528 1.53439 2.16476 2.38378 2.61627 3.14511 3.75010 4.02554 4.17018 4.27521 4.43850 4.47756 4.53645 4.64755 4.74698 4.99620 5.01977 5.06066 5.13540 5.21042 5.26654 5.34889 5.64861 5.70573 5.86527 6.09381 6.26736 6.69358 6.82873 6.96590 7.34288 7.80098 8.87854 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.024361 B = 0.017955 C = 0.014384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.081619 B = 1559.054940 C = 1946.110713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.109 3.891 3 N -0.598 5.598 4 C 0.083 3.917 5 C -0.153 4.153 6 C 0.054 3.946 7 N -0.678 5.678 8 C 0.204 3.796 9 H 0.017 0.983 10 C -0.522 4.522 11 H 0.095 0.905 12 C 0.019 3.981 13 N -0.904 5.904 14 Si 0.956 3.044 15 H -0.251 1.251 16 H -0.297 1.297 17 H -0.269 1.269 18 C 0.521 3.479 19 O -0.628 6.628 20 H 0.052 0.948 21 H 0.082 0.918 22 H 0.018 0.982 23 H 0.101 0.899 24 H 0.052 0.948 25 H 0.081 0.919 26 H 0.106 0.894 27 H 0.103 0.897 28 H 0.050 0.950 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.325 0.675 32 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.098 -3.672 -10.511 11.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 N -0.330 5.330 4 C -0.038 4.038 5 C -0.193 4.193 6 C -0.075 4.075 7 N -0.307 5.307 8 C 0.092 3.908 9 H 0.035 0.965 10 C -0.560 4.560 11 H 0.113 0.887 12 C -0.184 4.184 13 N -0.540 5.540 14 Si 0.781 3.219 15 H -0.175 1.175 16 H -0.224 1.224 17 H -0.194 1.194 18 C 0.310 3.690 19 O -0.510 6.510 20 H 0.071 0.929 21 H 0.101 0.899 22 H 0.037 0.963 23 H 0.120 0.880 24 H 0.070 0.930 25 H 0.100 0.900 26 H 0.124 0.876 27 H 0.121 0.879 28 H 0.069 0.931 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.141 0.859 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.885 -3.332 -9.844 11.095 hybrid contribution -1.286 -0.493 0.080 1.379 sum 2.599 -3.826 -9.764 10.804 Atomic orbital electron populations 1.21961 0.96502 1.01749 1.00593 1.21401 0.94328 0.83457 1.02157 1.47747 1.65040 1.13231 1.06956 1.22544 0.97088 1.00686 0.83515 1.22292 0.95470 0.98861 1.02719 1.21673 1.01216 0.98344 0.86277 1.60170 1.11766 1.47577 1.11185 1.19373 0.86152 0.88364 0.96873 0.96470 1.21258 0.91020 1.28598 1.15104 0.88703 1.25859 0.99418 0.96200 0.96880 1.70164 1.10819 1.41073 1.31960 0.85625 0.76897 0.79495 0.79914 1.17512 1.22376 1.19378 1.22218 0.74807 0.89771 0.82232 1.90435 1.56605 1.69867 1.34134 0.92861 0.89904 0.96276 0.88044 0.92979 0.90022 0.87632 0.87858 0.93106 0.90096 0.90161 0.85905 0.93097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.50 10.24 71.98 0.74 -4.76 16 2 C 0.11 4.03 6.08 86.38 0.53 4.55 16 3 N -0.60 -25.47 2.47 -820.56 -2.03 -27.50 16 4 C 0.08 2.94 5.85 86.26 0.50 3.45 16 5 C -0.15 -4.49 5.85 30.18 0.18 -4.31 16 6 C 0.05 1.79 5.82 86.09 0.50 2.29 16 7 N -0.68 -28.11 6.70 -503.27 -3.37 -31.48 16 8 C 0.20 10.47 3.20 43.65 0.14 10.61 16 9 H 0.02 1.06 8.13 -2.39 -0.02 1.04 16 10 C -0.52 -25.93 4.92 25.60 0.13 -25.81 16 11 H 0.10 4.36 5.16 -2.92 -0.02 4.34 16 12 C 0.02 0.96 4.84 84.65 0.41 1.37 16 13 N -0.90 -52.29 12.13 21.45 0.26 -52.03 16 14 Si 0.96 40.24 29.53 68.60 2.03 42.27 16 15 H -0.25 -9.59 7.11 99.48 0.71 -8.88 16 16 H -0.30 -13.00 7.11 99.48 0.71 -12.29 16 17 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 18 C 0.52 27.07 4.92 88.06 0.43 27.51 16 19 O -0.63 -37.91 16.63 -3.01 -0.05 -37.96 16 20 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 21 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16 22 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 23 H 0.10 2.83 8.03 -2.39 -0.02 2.81 16 24 H 0.05 2.10 7.40 -2.39 -0.02 2.09 16 25 H 0.08 2.38 7.92 -2.39 -0.02 2.36 16 26 H 0.11 4.34 4.16 -2.38 -0.01 4.33 16 27 H 0.10 2.26 8.14 -2.39 -0.02 2.25 16 28 H 0.05 1.51 8.05 -2.38 -0.02 1.49 16 29 H 0.08 2.86 5.19 -2.39 -0.01 2.85 16 30 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.32 12.94 8.51 -89.69 -0.76 12.18 16 32 H 0.26 14.70 8.31 -92.70 -0.77 13.93 16 Total: -1.00 -67.18 252.07 0.74 -66.44 By element: Atomic # 1 Polarization: 25.01 SS G_CDS: 0.36 Total: 25.37 kcal Atomic # 6 Polarization: 11.35 SS G_CDS: 3.55 Total: 14.90 kcal Atomic # 7 Polarization: -105.87 SS G_CDS: -5.14 Total: -111.01 kcal Atomic # 8 Polarization: -37.91 SS G_CDS: -0.05 Total: -37.96 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 2.03 Total: 42.27 kcal Total: -67.18 0.74 -66.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218983535.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.416 kcal (2) G-P(sol) polarization free energy of solvation -67.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds