Wall clock time and date at job start Mon Mar 30 2020 02:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.47250 * 120.07368 * 2 1 4 4 C 1.53114 * 108.39695 * 110.04129 * 3 2 1 5 5 C 1.51687 * 110.75778 * 85.59131 * 4 3 2 6 6 N 1.45757 * 113.82500 * 293.29907 * 5 4 3 7 7 C 1.46897 * 111.00006 * 302.62128 * 6 5 4 8 8 C 1.46588 * 112.58258 * 67.79203 * 6 5 4 9 9 H 1.08993 * 109.60318 * 33.85305 * 8 6 5 10 10 C 1.50706 * 109.78444 * 154.29232 * 8 6 5 11 11 H 1.07993 * 120.00345 * 359.24473 * 10 8 6 12 12 C 1.37886 * 119.99464 * 179.24189 * 10 8 6 13 13 N 1.31512 * 120.00099 * 359.97438 * 12 10 8 14 14 Si 1.86800 * 119.99482 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47517 * 90.00063 * 14 12 10 16 16 H 1.48504 * 109.46650 * 209.99699 * 14 12 10 17 17 H 1.48506 * 109.47257 * 329.99538 * 14 12 10 18 18 C 1.33610 * 120.07601 * 180.02562 * 2 1 3 19 19 O 1.21279 * 119.88260 * 359.44933 * 18 2 1 20 20 H 1.09000 * 109.47619 * 89.99491 * 1 2 3 21 21 H 1.08998 * 109.46975 * 209.99680 * 1 2 3 22 22 H 1.08999 * 109.47033 * 329.99303 * 1 2 3 23 23 H 1.08995 * 109.68001 * 350.31841 * 3 2 1 24 24 H 1.08996 * 109.68006 * 229.76719 * 3 2 1 25 25 H 1.09004 * 109.22413 * 325.26260 * 4 3 2 26 26 H 1.08996 * 109.22316 * 205.91959 * 4 3 2 27 27 H 1.09002 * 108.59052 * 54.37960 * 5 4 3 28 28 H 1.09001 * 108.58908 * 172.22100 * 5 4 3 29 29 H 1.09001 * 109.46974 * 56.04808 * 7 6 5 30 30 H 1.09005 * 109.47192 * 176.05228 * 7 6 5 31 31 H 1.09004 * 109.47016 * 296.04641 * 7 6 5 32 32 H 0.97002 * 119.99625 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2029 1.2743 0.0000 4 6 2.8759 1.4429 1.3649 5 6 4.2203 0.7410 1.3918 6 7 4.1286 -0.7107 1.2973 7 6 3.2984 -1.2572 2.3790 8 6 3.6486 -1.1603 -0.0127 9 1 4.0099 -0.4832 -0.7867 10 6 4.1481 -2.5552 -0.2878 11 1 4.7742 -3.0570 0.4351 12 6 3.8058 -3.1909 -1.4625 13 7 3.0429 -2.5801 -2.3426 14 14 4.4244 -4.9203 -1.8032 15 1 3.4493 -5.9079 -1.2751 16 1 4.5784 -5.1113 -3.2678 17 1 5.7374 -5.1164 -1.1376 18 6 2.1346 -1.1562 -0.0005 19 8 1.5275 -2.2061 0.0091 20 1 -0.3634 0.0001 -1.0276 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3633 0.8899 0.5139 23 1 1.5114 2.0989 -0.1726 24 1 2.9605 1.2597 -0.7835 25 1 2.2339 1.0182 2.1366 26 1 3.0215 2.5045 1.5645 27 1 4.8199 1.1063 0.5580 28 1 4.7276 0.9973 2.3219 29 1 2.3156 -0.7863 2.3561 30 1 3.1889 -2.3334 2.2447 31 1 3.7747 -1.0575 3.3389 32 1 2.8024 -3.0272 -3.1691 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218983571.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:43 Heat of formation + Delta-G solvation = -14.746281 kcal Electronic energy + Delta-G solvation = -15466.841896 eV Core-core repulsion = 13042.056429 eV Total energy + Delta-G solvation = -2424.785467 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.62959 -36.16933 -34.79990 -32.39222 -30.84027 -28.30851 -26.48867 -25.65061 -23.83870 -22.55248 -19.75545 -18.13768 -16.52835 -16.05400 -15.22181 -15.02828 -14.57903 -14.14609 -13.65768 -13.09407 -12.94926 -12.49752 -12.09566 -11.76860 -11.45162 -11.42720 -11.14318 -10.97826 -10.86331 -10.68183 -10.51103 -10.35712 -9.79954 -9.29587 -8.58921 -8.31711 -7.73001 -7.22712 -5.96956 -3.97420 3.40602 3.47347 3.49479 3.93752 4.14556 4.51922 5.06451 5.21995 5.30819 5.37856 5.57644 5.68152 5.91053 5.93426 6.00213 6.08924 6.19958 6.21165 6.28261 6.30201 6.48067 6.68023 6.72713 7.03733 7.40060 7.85813 7.96561 8.06572 8.31683 8.64317 9.05980 9.66387 9.75207 11.14414 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.036621 B = 0.013243 C = 0.011355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.395904 B = 2113.751461 C = 2465.180656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.638 5.638 3 C 0.119 3.881 4 C -0.177 4.177 5 C 0.053 3.947 6 N -0.524 5.524 7 C 0.028 3.972 8 C 0.212 3.788 9 H 0.053 0.947 10 C -0.495 4.495 11 H 0.068 0.932 12 C 0.074 3.926 13 N -0.883 5.883 14 Si 0.903 3.097 15 H -0.281 1.281 16 H -0.288 1.288 17 H -0.273 1.273 18 C 0.506 3.494 19 O -0.521 6.521 20 H 0.041 0.959 21 H 0.066 0.934 22 H 0.050 0.950 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.020 0.980 30 H 0.075 0.925 31 H 0.050 0.950 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.370 8.997 5.455 10.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.376 5.376 3 C -0.005 4.005 4 C -0.217 4.217 5 C -0.076 4.076 6 N -0.247 5.247 7 C -0.121 4.121 8 C 0.103 3.897 9 H 0.070 0.930 10 C -0.533 4.533 11 H 0.087 0.913 12 C -0.130 4.130 13 N -0.520 5.520 14 Si 0.731 3.269 15 H -0.207 1.207 16 H -0.214 1.214 17 H -0.198 1.198 18 C 0.293 3.707 19 O -0.393 6.393 20 H 0.059 0.941 21 H 0.085 0.915 22 H 0.069 0.931 23 H 0.089 0.911 24 H 0.090 0.910 25 H 0.085 0.915 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.038 0.962 30 H 0.094 0.906 31 H 0.069 0.931 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.314 8.164 5.319 9.832 hybrid contribution -0.820 -0.363 -0.480 1.017 sum -2.134 7.801 4.840 9.425 Atomic orbital electron populations 1.21377 0.82097 1.01215 1.00523 1.48288 1.05439 1.06886 1.77000 1.21606 0.96005 0.85985 0.96926 1.22468 0.99910 1.00941 0.98391 1.21757 0.95078 0.88839 1.01937 1.61668 1.51917 1.06628 1.04473 1.22328 0.94337 1.01632 0.93754 1.19710 0.85242 0.98712 0.86062 0.92973 1.20676 1.30790 0.98386 1.03464 0.91348 1.24886 0.94197 0.98057 0.95847 1.69884 1.35332 1.37739 1.09076 0.86430 0.78992 0.84569 0.76953 1.20671 1.21442 1.19755 1.22655 0.93060 0.81739 0.73215 1.90486 1.70199 1.31443 1.47166 0.94068 0.91537 0.93079 0.91128 0.90987 0.91472 0.91187 0.91295 0.91868 0.96176 0.90585 0.93075 0.92988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.65 10.39 59.85 0.62 2.27 16 2 N -0.64 -13.30 2.75 -180.93 -0.50 -13.80 16 3 C 0.12 1.96 5.93 -3.57 -0.02 1.94 16 4 C -0.18 -2.61 5.45 -27.34 -0.15 -2.76 16 5 C 0.05 0.89 5.24 -5.11 -0.03 0.87 16 6 N -0.52 -11.24 4.71 -239.33 -1.13 -12.37 16 7 C 0.03 0.56 8.31 60.06 0.50 1.06 16 8 C 0.21 5.42 1.84 -69.84 -0.13 5.29 16 9 H 0.05 1.40 6.66 -51.93 -0.35 1.05 16 10 C -0.49 -14.21 7.83 -34.43 -0.27 -14.48 16 11 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 12 C 0.07 2.16 4.83 -17.82 -0.09 2.07 16 13 N -0.88 -26.67 12.02 55.43 0.67 -26.01 16 14 Si 0.90 22.67 29.54 -169.99 -5.02 17.65 16 15 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 16 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 17 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 18 C 0.51 12.93 3.90 -11.16 -0.04 12.88 16 19 O -0.52 -15.42 14.66 5.56 0.08 -15.34 16 20 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 21 H 0.07 1.30 7.40 -51.93 -0.38 0.91 16 22 H 0.05 0.72 8.03 -51.93 -0.42 0.30 16 23 H 0.07 0.95 7.92 -51.93 -0.41 0.53 16 24 H 0.07 1.27 6.76 -51.93 -0.35 0.92 16 25 H 0.07 1.06 6.23 -51.93 -0.32 0.74 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.07 1.13 7.78 -51.93 -0.40 0.73 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.02 0.41 5.17 -51.93 -0.27 0.14 16 30 H 0.08 1.75 7.66 -51.93 -0.40 1.35 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 251.00 15.07 3.78 3.78 Total: -1.00 -33.21 251.00 -6.26 -39.47 By element: Atomic # 1 Polarization: 2.00 SS G_CDS: -4.54 Total: -2.54 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: 0.40 Total: 9.15 kcal Atomic # 7 Polarization: -51.21 SS G_CDS: -0.96 Total: -52.17 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: 0.08 Total: -15.34 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -33.21 -6.26 -39.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218983571.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.725 kcal (2) G-P(sol) polarization free energy of solvation -33.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds