Wall clock time and date at job start Mon Mar 30 2020 02:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.47245 * 120.08105 * 2 1 4 4 C 1.53112 * 108.39989 * 110.03624 * 3 2 1 5 5 C 1.51679 * 110.75950 * 85.59468 * 4 3 2 6 6 N 1.45760 * 113.93693 * 293.22505 * 5 4 3 7 7 C 1.46906 * 110.99905 * 192.72560 * 6 5 4 8 8 C 1.46876 * 112.43645 * 67.71115 * 6 5 4 9 9 H 1.08995 * 109.60691 * 154.30521 * 8 6 5 10 10 C 1.50706 * 109.60374 * 33.98052 * 8 6 5 11 11 H 1.08003 * 119.99402 * 3.68411 * 10 8 6 12 12 C 1.37868 * 120.00234 * 183.67717 * 10 8 6 13 13 N 1.31515 * 120.00037 * 359.72579 * 12 10 8 14 14 Si 1.86800 * 120.00143 * 180.02562 * 12 10 8 15 15 H 1.48507 * 109.47092 * 269.72696 * 14 12 10 16 16 H 1.48499 * 109.47320 * 29.72246 * 14 12 10 17 17 H 1.48503 * 109.47476 * 149.72315 * 14 12 10 18 18 C 1.33615 * 120.07151 * 180.02562 * 2 1 3 19 19 O 1.21282 * 119.88326 * 359.47332 * 18 2 1 20 20 H 1.09001 * 109.47191 * 89.99757 * 1 2 3 21 21 H 1.08996 * 109.47732 * 210.00459 * 1 2 3 22 22 H 1.09010 * 109.46753 * 330.00183 * 1 2 3 23 23 H 1.09001 * 109.67842 * 350.31046 * 3 2 1 24 24 H 1.08994 * 109.70796 * 229.78162 * 3 2 1 25 25 H 1.09001 * 109.22090 * 325.26167 * 4 3 2 26 26 H 1.09009 * 109.18310 * 205.90024 * 4 3 2 27 27 H 1.09002 * 108.59421 * 172.07105 * 5 4 3 28 28 H 1.09004 * 108.48086 * 54.29517 * 5 4 3 29 29 H 1.09004 * 109.46806 * 294.17830 * 7 6 5 30 30 H 1.09000 * 109.47153 * 54.18076 * 7 6 5 31 31 H 1.09003 * 109.46579 * 174.18283 * 7 6 5 32 32 H 0.97000 * 120.00327 * 0.28153 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2030 1.2741 0.0000 4 6 2.8760 1.4428 1.3649 5 6 4.2202 0.7408 1.3920 6 7 4.1312 -0.7111 1.2994 7 6 5.4169 -1.3396 1.6310 8 6 3.6485 -1.1606 -0.0129 9 1 4.0120 -2.1690 -0.2106 10 6 4.1478 -0.2243 -1.0831 11 1 4.8117 0.5871 -0.8238 12 6 3.7571 -0.4037 -2.3931 13 7 2.9531 -1.3952 -2.7096 14 14 4.3766 0.7563 -3.7197 15 1 3.4339 1.8951 -3.8611 16 1 5.7184 1.2685 -3.3423 17 1 4.4699 0.0277 -5.0104 18 6 2.1345 -1.1563 -0.0005 19 8 1.5273 -2.2061 0.0087 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 -0.8899 0.5139 22 1 -0.3633 0.8901 0.5139 23 1 1.5115 2.0988 -0.1727 24 1 2.9606 1.2601 -0.7835 25 1 2.2338 1.0182 2.1366 26 1 3.0216 2.5047 1.5637 27 1 4.7287 0.9993 2.3209 28 1 4.8178 1.1062 0.5567 29 1 6.1569 -1.0731 0.8763 30 1 5.7514 -0.9894 2.6075 31 1 5.2963 -2.4227 1.6551 32 1 2.6315 -1.9977 -2.0208 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218983596.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:46 Heat of formation + Delta-G solvation = -38.844678 kcal Electronic energy + Delta-G solvation = -15622.394928 eV Core-core repulsion = 13196.564477 eV Total energy + Delta-G solvation = -2425.830452 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.36459 -38.36111 -36.44106 -34.91448 -32.58181 -30.10173 -27.77049 -27.00439 -25.65017 -24.36233 -21.55027 -20.08270 -19.09548 -17.74430 -17.43856 -16.44652 -15.84177 -15.56284 -15.38755 -14.94819 -14.48678 -14.07878 -14.00767 -13.64210 -13.32717 -13.26133 -12.89051 -12.64251 -12.58134 -12.10108 -11.95469 -11.68889 -11.53799 -11.23813 -10.81933 -10.41863 -9.40142 -8.89976 -8.62851 -6.39708 1.53984 1.61094 1.77035 1.97005 2.44146 2.54385 3.09840 3.37343 4.11908 4.15008 4.21942 4.36165 4.50710 4.58944 4.65419 4.67895 4.78649 4.84997 4.95987 4.98120 5.03235 5.04106 5.12911 5.59202 5.64392 5.92462 5.94470 6.31478 6.37057 6.49293 6.72307 7.35274 7.55794 8.68338 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.024440 B = 0.017265 C = 0.014625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.401340 B = 1621.394983 C = 1914.005661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.600 5.600 3 C 0.081 3.919 4 C -0.118 4.118 5 C 0.053 3.947 6 N -0.553 5.553 7 C 0.040 3.960 8 C 0.187 3.813 9 H 0.009 0.991 10 C -0.616 4.616 11 H 0.089 0.911 12 C -0.021 4.021 13 N -0.928 5.928 14 Si 1.111 2.889 15 H -0.264 1.264 16 H -0.260 1.260 17 H -0.295 1.295 18 C 0.535 3.465 19 O -0.634 6.634 20 H 0.038 0.962 21 H 0.050 0.950 22 H 0.103 0.897 23 H 0.091 0.909 24 H 0.107 0.893 25 H 0.052 0.948 26 H 0.110 0.890 27 H 0.080 0.920 28 H 0.046 0.954 29 H 0.022 0.978 30 H 0.090 0.910 31 H 0.048 0.952 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.883 10.573 6.400 12.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.330 5.330 3 C -0.040 4.040 4 C -0.156 4.156 5 C -0.074 4.074 6 N -0.279 5.279 7 C -0.107 4.107 8 C 0.076 3.924 9 H 0.027 0.973 10 C -0.654 4.654 11 H 0.107 0.893 12 C -0.222 4.222 13 N -0.565 5.565 14 Si 0.932 3.068 15 H -0.189 1.189 16 H -0.184 1.184 17 H -0.222 1.222 18 C 0.325 3.675 19 O -0.518 6.518 20 H 0.056 0.944 21 H 0.068 0.932 22 H 0.122 0.878 23 H 0.109 0.891 24 H 0.124 0.876 25 H 0.071 0.929 26 H 0.128 0.872 27 H 0.098 0.902 28 H 0.064 0.936 29 H 0.040 0.960 30 H 0.109 0.891 31 H 0.067 0.933 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.144 10.234 5.168 11.522 hybrid contribution 0.332 -0.987 0.811 1.320 sum 1.476 9.247 5.979 11.110 Atomic orbital electron populations 1.21628 0.80154 1.02997 1.00866 1.47608 1.06469 1.07250 1.71696 1.22652 0.97658 0.83127 1.00557 1.21684 0.96081 1.01408 0.96426 1.21671 0.98273 0.86378 1.01112 1.61250 1.28852 1.09729 1.28035 1.22233 0.89102 0.98747 1.00667 1.19469 0.87862 0.96013 0.89013 0.97343 1.22457 1.32867 1.16455 0.93586 0.89302 1.27295 0.94071 0.99137 1.01721 1.70805 1.31641 1.15979 1.38049 0.83042 0.77055 0.73933 0.72810 1.18911 1.18427 1.22164 1.21455 0.91975 0.82425 0.71636 1.90473 1.72100 1.34111 1.55148 0.94372 0.93158 0.87813 0.89079 0.87576 0.92913 0.87185 0.90169 0.93563 0.95952 0.89126 0.93342 0.92710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.26 10.39 127.77 1.33 4.59 16 2 N -0.60 -26.78 2.88 -845.38 -2.43 -29.21 16 3 C 0.08 2.95 5.85 86.27 0.50 3.45 16 4 C -0.12 -3.61 5.86 30.20 0.18 -3.43 16 5 C 0.05 1.81 4.83 86.09 0.42 2.23 16 6 N -0.55 -23.36 4.58 -910.32 -4.17 -27.53 16 7 C 0.04 1.46 9.39 127.69 1.20 2.66 16 8 C 0.19 9.71 1.96 43.65 0.09 9.80 16 9 H 0.01 0.52 7.68 -2.39 -0.02 0.50 16 10 C -0.62 -30.92 4.89 25.60 0.13 -30.79 16 11 H 0.09 4.14 5.06 -2.91 -0.01 4.12 16 12 C -0.02 -1.12 4.92 84.65 0.42 -0.70 16 13 N -0.93 -56.99 13.35 21.44 0.29 -56.71 16 14 Si 1.11 46.06 29.90 68.60 2.05 48.11 16 15 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 16 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 17 H -0.30 -12.88 7.11 99.48 0.71 -12.18 16 18 C 0.54 28.90 4.78 88.06 0.42 29.33 16 19 O -0.63 -39.11 15.97 -3.04 -0.05 -39.16 16 20 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 21 H 0.05 2.04 7.40 -2.39 -0.02 2.03 16 22 H 0.10 2.87 8.03 -2.38 -0.02 2.85 16 23 H 0.09 2.63 7.92 -2.39 -0.02 2.61 16 24 H 0.11 4.44 4.21 -2.39 -0.01 4.43 16 25 H 0.05 1.71 8.05 -2.39 -0.02 1.69 16 26 H 0.11 2.42 8.14 -2.38 -0.02 2.41 16 27 H 0.08 2.24 7.85 -2.39 -0.02 2.23 16 28 H 0.05 1.68 5.17 -2.38 -0.01 1.66 16 29 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.09 2.57 7.94 -2.39 -0.02 2.55 16 31 H 0.05 1.81 8.06 -2.39 -0.02 1.79 16 32 H 0.26 17.23 5.48 -92.71 -0.51 16.72 16 Total: -1.00 -71.66 248.13 1.73 -69.93 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: 1.37 Total: 17.43 kcal Atomic # 6 Polarization: 12.45 SS G_CDS: 4.67 Total: 17.12 kcal Atomic # 7 Polarization: -107.13 SS G_CDS: -6.31 Total: -113.44 kcal Atomic # 8 Polarization: -39.11 SS G_CDS: -0.05 Total: -39.16 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.05 Total: 48.11 kcal Total: -71.66 1.73 -69.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218983596.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.087 kcal (2) G-P(sol) polarization free energy of solvation -71.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds