Wall clock time and date at job start Mon Mar 30 2020 02:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46902 * 109.47356 * 2 1 4 4 C 1.45759 * 110.99625 * 60.75966 * 3 2 1 5 5 C 1.51690 * 113.93509 * 167.27710 * 4 3 2 6 6 C 1.53104 * 110.75884 * 66.77148 * 5 4 3 7 7 N 1.47241 * 108.40426 * 274.40687 * 6 5 4 8 8 C 1.33617 * 119.84683 * 69.98611 * 7 6 5 9 9 O 1.21276 * 119.88370 * 180.55307 * 8 7 6 10 10 C 1.46875 * 110.99976 * 294.94095 * 3 2 1 11 11 H 1.08997 * 109.60295 * 330.70796 * 10 3 2 12 12 C 1.50700 * 109.60212 * 91.02847 * 10 3 2 13 13 H 1.08003 * 120.00000 * 354.55660 * 12 10 3 14 14 C 1.37874 * 120.00205 * 174.55539 * 12 10 3 15 15 N 1.31519 * 120.00144 * 359.72710 * 14 12 10 16 16 Si 1.86810 * 120.00102 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.46783 * 60.00150 * 16 14 12 18 18 H 1.48497 * 109.46765 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.46893 * 300.00005 * 16 14 12 20 20 H 1.09002 * 109.46897 * 305.02154 * 1 2 3 21 21 H 1.08999 * 109.46847 * 65.02039 * 1 2 3 22 22 H 1.08998 * 109.46756 * 185.02490 * 1 2 3 23 23 H 1.09005 * 109.47403 * 240.00287 * 2 1 3 24 24 H 1.08998 * 109.47620 * 120.00231 * 2 1 3 25 25 H 1.08998 * 108.58879 * 288.42686 * 4 3 2 26 26 H 1.08991 * 108.59104 * 46.12508 * 4 3 2 27 27 H 1.09000 * 109.21660 * 187.10271 * 5 4 3 28 28 H 1.08998 * 109.21786 * 306.43762 * 5 4 3 29 29 H 1.09002 * 109.68041 * 34.13557 * 6 5 4 30 30 H 1.09000 * 109.67796 * 154.63793 * 6 5 4 31 31 H 0.97003 * 120.07938 * 249.96726 * 7 6 5 32 32 H 0.97000 * 119.99967 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5672 2.0990 1.1874 5 6 2.2714 3.4231 1.4151 6 6 1.9137 4.4244 0.3134 7 7 2.8242 4.2094 -0.8236 8 6 2.7145 3.1020 -1.5632 9 8 3.4706 2.9195 -2.4937 10 6 1.6501 2.0740 -1.2433 11 1 1.5812 1.3506 -2.0557 12 6 0.3210 2.7614 -1.0645 13 1 -0.2406 2.6221 -0.1525 14 6 -0.1782 3.5680 -2.0650 15 7 0.5081 3.7419 -3.1734 16 14 -1.8261 4.4195 -1.8436 17 1 -1.7664 5.3129 -0.6588 18 1 -2.1346 5.2230 -3.0537 19 1 -2.8868 3.4001 -1.6420 20 1 -0.3633 0.5898 0.8416 21 1 -0.3633 0.4340 -0.9315 22 1 -0.3633 -1.0237 0.0900 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 0.4974 2.2859 1.0938 26 1 1.7309 1.4641 2.0581 27 1 1.9692 3.8287 2.3806 28 1 3.3492 3.2607 1.4163 29 1 0.8837 4.2661 -0.0062 30 1 2.0291 5.4408 0.6897 31 1 3.5019 4.8703 -1.0354 32 1 0.1568 4.3091 -3.8775 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218983634.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:20 Heat of formation + Delta-G solvation = -21.174009 kcal Electronic energy + Delta-G solvation = -15609.676148 eV Core-core repulsion = 13184.611954 eV Total energy + Delta-G solvation = -2425.064194 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.24725 -36.50210 -34.26045 -32.77580 -30.68108 -29.20075 -26.94743 -24.69037 -23.55408 -21.62592 -19.46016 -18.59368 -16.94632 -15.99734 -15.37681 -14.68635 -14.32194 -13.69315 -13.55618 -13.13903 -12.75392 -12.26876 -11.88688 -11.80129 -11.63210 -11.34951 -11.08344 -11.01292 -10.58027 -10.47821 -10.14256 -9.97111 -9.75417 -9.54799 -8.72073 -8.29936 -7.69190 -7.14582 -6.17562 -4.25989 3.15995 3.23889 3.24957 4.20647 4.30805 4.73114 4.98995 5.23049 5.68192 5.73238 5.80330 5.98857 6.09952 6.24849 6.35989 6.43151 6.48804 6.54508 6.64793 6.67187 6.81275 7.07448 7.09877 7.26430 7.65760 7.80377 8.04075 8.15132 8.27632 8.68160 8.83624 9.30378 9.92539 10.82865 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.024623 B = 0.017322 C = 0.014708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.893655 B = 1616.027586 C = 1903.232457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.065 3.935 3 N -0.541 5.541 4 C 0.059 3.941 5 C -0.126 4.126 6 C 0.091 3.909 7 N -0.721 5.721 8 C 0.571 3.429 9 O -0.587 6.587 10 C 0.202 3.798 11 H 0.062 0.938 12 C -0.555 4.555 13 H 0.079 0.921 14 C 0.069 3.931 15 N -0.860 5.860 16 Si 0.888 3.112 17 H -0.273 1.273 18 H -0.286 1.286 19 H -0.274 1.274 20 H 0.050 0.950 21 H 0.079 0.921 22 H 0.037 0.963 23 H 0.066 0.934 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.045 0.955 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.125 0.875 30 H 0.049 0.951 31 H 0.375 0.625 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.172 -0.833 8.631 8.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.063 4.063 3 N -0.266 5.266 4 C -0.069 4.069 5 C -0.165 4.165 6 C -0.034 4.034 7 N -0.371 5.371 8 C 0.360 3.640 9 O -0.467 6.467 10 C 0.092 3.908 11 H 0.079 0.921 12 C -0.593 4.593 13 H 0.097 0.903 14 C -0.138 4.138 15 N -0.495 5.495 16 Si 0.714 3.286 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.200 1.200 20 H 0.069 0.931 21 H 0.098 0.902 22 H 0.056 0.944 23 H 0.084 0.916 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.063 0.937 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.143 0.857 30 H 0.067 0.933 31 H 0.208 0.792 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.418 -0.995 8.003 8.075 hybrid contribution -1.577 0.966 -0.040 1.850 sum -1.995 -0.029 7.963 8.210 Atomic orbital electron populations 1.22502 0.98064 0.99925 1.03889 1.21959 0.93266 0.90241 1.00835 1.61451 1.60268 1.01883 1.03013 1.21451 0.99498 0.94207 0.91708 1.21713 1.00764 0.96027 0.98003 1.22302 0.99436 0.95792 0.85826 1.45620 1.36299 1.22760 1.32458 1.20790 0.81957 0.82141 0.79152 1.90500 1.45866 1.79119 1.31166 1.19541 0.91240 0.91721 0.88304 0.92058 1.21419 1.04087 1.30344 1.03406 0.90289 1.25076 0.97211 0.96478 0.95053 1.69960 1.37283 1.36359 1.05850 0.86719 0.84154 0.79806 0.77872 1.19845 1.21117 1.19965 0.93106 0.90159 0.94362 0.91596 0.92525 0.92732 0.93699 0.92142 0.92323 0.85730 0.93262 0.79192 0.92167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.23 8.55 37.16 0.32 -2.91 16 2 C 0.07 1.19 5.88 -3.82 -0.02 1.17 16 3 N -0.54 -11.32 4.56 -230.83 -1.05 -12.37 16 4 C 0.06 1.09 4.15 -5.11 -0.02 1.07 16 5 C -0.13 -2.16 5.86 -27.34 -0.16 -2.32 16 6 C 0.09 1.74 6.42 -3.58 -0.02 1.71 16 7 N -0.72 -16.07 5.32 -59.76 -0.32 -16.39 16 8 C 0.57 14.99 5.46 -11.16 -0.06 14.93 16 9 O -0.59 -17.63 17.92 5.56 0.10 -17.53 16 10 C 0.20 4.97 1.93 -69.69 -0.13 4.84 16 11 H 0.06 1.71 7.64 -51.93 -0.40 1.31 16 12 C -0.55 -13.33 2.94 -34.44 -0.10 -13.43 16 13 H 0.08 1.81 4.56 -52.48 -0.24 1.58 16 14 C 0.07 1.74 4.84 -17.82 -0.09 1.66 16 15 N -0.86 -24.04 12.12 55.43 0.67 -23.37 16 16 Si 0.89 19.52 29.53 -169.99 -5.02 14.50 16 17 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 18 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 20 H 0.05 0.87 6.28 -51.93 -0.33 0.54 16 21 H 0.08 1.63 6.45 -51.93 -0.34 1.29 16 22 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.07 1.22 7.93 -51.93 -0.41 0.81 16 24 H 0.06 0.90 8.05 -51.93 -0.42 0.48 16 25 H 0.05 1.04 3.99 -51.93 -0.21 0.84 16 26 H 0.04 0.73 7.92 -51.93 -0.41 0.32 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.06 1.05 8.05 -51.93 -0.42 0.63 16 29 H 0.13 2.69 4.16 -51.93 -0.22 2.48 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.37 7.76 8.92 -40.82 -0.36 7.39 16 32 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 243.49 15.07 3.67 3.67 Total: -1.00 -29.89 243.49 -6.39 -36.27 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -4.15 Total: 8.51 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: -0.29 Total: 6.71 kcal Atomic # 7 Polarization: -51.43 SS G_CDS: -0.70 Total: -52.13 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: 0.10 Total: -17.53 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.50 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -29.89 -6.39 -36.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218983634.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.099 kcal (2) G-P(sol) polarization free energy of solvation -29.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds