Wall clock time and date at job start Mon Mar 30 2020 02:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46902 * 109.47356 * 2 1 4 4 C 1.45759 * 110.99625 * 60.75966 * 3 2 1 5 5 C 1.51690 * 113.93509 * 167.27710 * 4 3 2 6 6 C 1.53104 * 110.75884 * 66.77148 * 5 4 3 7 7 N 1.47241 * 108.40426 * 274.40687 * 6 5 4 8 8 C 1.33617 * 119.84683 * 69.98611 * 7 6 5 9 9 O 1.21276 * 119.88370 * 180.55307 * 8 7 6 10 10 C 1.46875 * 110.99976 * 294.94095 * 3 2 1 11 11 H 1.08997 * 109.60295 * 330.70796 * 10 3 2 12 12 C 1.50700 * 109.60212 * 91.02847 * 10 3 2 13 13 H 1.08003 * 120.00000 * 354.55660 * 12 10 3 14 14 C 1.37874 * 120.00205 * 174.55539 * 12 10 3 15 15 N 1.31519 * 120.00144 * 359.72710 * 14 12 10 16 16 Si 1.86810 * 120.00102 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.46783 * 60.00150 * 16 14 12 18 18 H 1.48497 * 109.46765 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.46893 * 300.00005 * 16 14 12 20 20 H 1.09002 * 109.46897 * 305.02154 * 1 2 3 21 21 H 1.08999 * 109.46847 * 65.02039 * 1 2 3 22 22 H 1.08998 * 109.46756 * 185.02490 * 1 2 3 23 23 H 1.09005 * 109.47403 * 240.00287 * 2 1 3 24 24 H 1.08998 * 109.47620 * 120.00231 * 2 1 3 25 25 H 1.08998 * 108.58879 * 288.42686 * 4 3 2 26 26 H 1.08991 * 108.59104 * 46.12508 * 4 3 2 27 27 H 1.09000 * 109.21660 * 187.10271 * 5 4 3 28 28 H 1.08998 * 109.21786 * 306.43762 * 5 4 3 29 29 H 1.09002 * 109.68041 * 34.13557 * 6 5 4 30 30 H 1.09000 * 109.67796 * 154.63793 * 6 5 4 31 31 H 0.97003 * 120.07938 * 249.96726 * 7 6 5 32 32 H 0.97000 * 119.99967 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5672 2.0990 1.1874 5 6 2.2714 3.4231 1.4151 6 6 1.9137 4.4244 0.3134 7 7 2.8242 4.2094 -0.8236 8 6 2.7145 3.1020 -1.5632 9 8 3.4706 2.9195 -2.4937 10 6 1.6501 2.0740 -1.2433 11 1 1.5812 1.3506 -2.0557 12 6 0.3210 2.7614 -1.0645 13 1 -0.2406 2.6221 -0.1525 14 6 -0.1782 3.5680 -2.0650 15 7 0.5081 3.7419 -3.1734 16 14 -1.8261 4.4195 -1.8436 17 1 -1.7664 5.3129 -0.6588 18 1 -2.1346 5.2230 -3.0537 19 1 -2.8868 3.4001 -1.6420 20 1 -0.3633 0.5898 0.8416 21 1 -0.3633 0.4340 -0.9315 22 1 -0.3633 -1.0237 0.0900 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 0.4974 2.2859 1.0938 26 1 1.7309 1.4641 2.0581 27 1 1.9692 3.8287 2.3806 28 1 3.3492 3.2607 1.4163 29 1 0.8837 4.2661 -0.0062 30 1 2.0291 5.4408 0.6897 31 1 3.5019 4.8703 -1.0354 32 1 0.1568 4.3091 -3.8775 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218983634.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:20 Heat of formation + Delta-G solvation = -44.941051 kcal Electronic energy + Delta-G solvation = -15610.706764 eV Core-core repulsion = 13184.611954 eV Total energy + Delta-G solvation = -2426.094810 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.03397 -38.37012 -35.99010 -34.68881 -32.28735 -30.90383 -28.71801 -26.29544 -25.38530 -23.17613 -21.07166 -20.41858 -18.81785 -17.80721 -17.08534 -16.53895 -15.96103 -15.45065 -15.18397 -14.79277 -14.51830 -13.83799 -13.69686 -13.54977 -13.26892 -12.94247 -12.70940 -12.67894 -12.25312 -12.04303 -11.80791 -11.57141 -11.37048 -11.22913 -10.66712 -10.29481 -9.52935 -8.83776 -8.09840 -6.24713 1.43393 1.45273 1.52352 2.32602 2.41237 2.96079 3.14198 3.55071 4.26056 4.32629 4.34177 4.52718 4.70386 4.76604 4.80649 4.93003 4.99378 5.10181 5.15700 5.22804 5.27169 5.32039 5.60799 5.72058 5.73651 5.94637 6.25780 6.44129 6.63010 6.82077 6.92452 7.35360 7.95079 8.88430 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.024623 B = 0.017322 C = 0.014708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.893655 B = 1616.027586 C = 1903.232457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.062 3.938 3 N -0.553 5.553 4 C 0.054 3.946 5 C -0.121 4.121 6 C 0.083 3.917 7 N -0.714 5.714 8 C 0.561 3.439 9 O -0.641 6.641 10 C 0.209 3.791 11 H 0.013 0.987 12 C -0.532 4.532 13 H 0.096 0.904 14 C 0.019 3.981 15 N -0.909 5.909 16 Si 0.951 3.049 17 H -0.252 1.252 18 H -0.299 1.299 19 H -0.270 1.270 20 H 0.059 0.941 21 H 0.043 0.957 22 H 0.064 0.936 23 H 0.050 0.950 24 H 0.089 0.911 25 H 0.050 0.950 26 H 0.075 0.925 27 H 0.103 0.897 28 H 0.052 0.948 29 H 0.104 0.896 30 H 0.085 0.915 31 H 0.382 0.618 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.233 -0.472 11.773 11.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.066 4.066 3 N -0.278 5.278 4 C -0.073 4.073 5 C -0.160 4.160 6 C -0.039 4.039 7 N -0.362 5.362 8 C 0.350 3.650 9 O -0.524 6.524 10 C 0.098 3.902 11 H 0.031 0.969 12 C -0.570 4.570 13 H 0.114 0.886 14 C -0.183 4.183 15 N -0.547 5.547 16 Si 0.775 3.225 17 H -0.176 1.176 18 H -0.225 1.225 19 H -0.195 1.195 20 H 0.078 0.922 21 H 0.062 0.938 22 H 0.083 0.917 23 H 0.068 0.932 24 H 0.108 0.892 25 H 0.067 0.933 26 H 0.093 0.907 27 H 0.122 0.878 28 H 0.071 0.929 29 H 0.122 0.878 30 H 0.104 0.896 31 H 0.216 0.784 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.503 -0.622 11.225 11.342 hybrid contribution -1.212 0.802 -0.954 1.738 sum -2.715 0.179 10.271 10.626 Atomic orbital electron populations 1.22353 0.97293 1.01489 1.02179 1.22069 0.93915 0.88959 1.01684 1.61428 1.60984 1.02995 1.02375 1.21617 0.99142 0.95294 0.91274 1.21715 1.00313 0.94891 0.99037 1.22475 0.97443 0.98773 0.85258 1.45619 1.36495 1.21504 1.32591 1.21136 0.81683 0.83411 0.78808 1.90452 1.47950 1.80475 1.33569 1.19201 0.91438 0.90714 0.88828 0.96929 1.21593 1.03400 1.28591 1.03403 0.88646 1.25846 1.00408 0.97414 0.94636 1.70155 1.39415 1.38005 1.07085 0.85711 0.80022 0.78886 0.77831 1.17605 1.22527 1.19452 0.92213 0.93770 0.91684 0.93181 0.89223 0.93251 0.90666 0.87844 0.92905 0.87836 0.89621 0.78434 0.92981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.75 8.55 71.98 0.62 -5.14 16 2 C 0.06 2.15 5.88 86.30 0.51 2.65 16 3 N -0.55 -22.47 4.56 -884.21 -4.03 -26.50 16 4 C 0.05 1.79 4.15 86.09 0.36 2.15 16 5 C -0.12 -3.66 5.86 30.20 0.18 -3.48 16 6 C 0.08 2.96 6.42 86.27 0.55 3.51 16 7 N -0.71 -31.38 5.32 -462.01 -2.46 -33.84 16 8 C 0.56 30.07 5.46 88.06 0.48 30.55 16 9 O -0.64 -40.17 17.92 -3.02 -0.05 -40.22 16 10 C 0.21 10.48 1.93 43.65 0.08 10.56 16 11 H 0.01 0.75 7.64 -2.39 -0.02 0.74 16 12 C -0.53 -25.34 2.94 25.60 0.08 -25.26 16 13 H 0.10 4.18 4.56 -2.91 -0.01 4.17 16 14 C 0.02 0.95 4.84 84.65 0.41 1.36 16 15 N -0.91 -52.53 12.12 21.45 0.26 -52.27 16 16 Si 0.95 39.64 29.53 68.60 2.03 41.67 16 17 H -0.25 -9.59 7.11 99.48 0.71 -8.88 16 18 H -0.30 -13.05 7.11 99.48 0.71 -12.34 16 19 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 20 H 0.06 1.85 6.28 -2.39 -0.01 1.83 16 21 H 0.04 1.77 6.45 -2.39 -0.02 1.75 16 22 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 23 H 0.05 1.87 7.93 -2.38 -0.02 1.86 16 24 H 0.09 2.55 8.05 -2.39 -0.02 2.54 16 25 H 0.05 1.70 3.99 -2.39 -0.01 1.69 16 26 H 0.08 2.07 7.92 -2.39 -0.02 2.05 16 27 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.05 1.69 8.05 -2.39 -0.02 1.68 16 29 H 0.10 4.21 4.16 -2.39 -0.01 4.20 16 30 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.38 15.64 8.92 -92.71 -0.83 14.81 16 32 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -67.33 243.49 -0.69 -68.02 By element: Atomic # 1 Polarization: 25.93 SS G_CDS: 0.31 Total: 26.23 kcal Atomic # 6 Polarization: 13.64 SS G_CDS: 3.26 Total: 16.90 kcal Atomic # 7 Polarization: -106.37 SS G_CDS: -6.23 Total: -112.60 kcal Atomic # 8 Polarization: -40.17 SS G_CDS: -0.05 Total: -40.22 kcal Atomic # 14 Polarization: 39.64 SS G_CDS: 2.03 Total: 41.67 kcal Total: -67.33 -0.69 -68.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218983634.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.079 kcal (2) G-P(sol) polarization free energy of solvation -67.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds