Wall clock time and date at job start Mon Mar 30 2020 02:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46763 * 124.35296 * 2 1 4 4 C 1.54474 * 105.47440 * 196.99626 * 3 2 1 5 5 C 1.54624 * 101.76712 * 334.58394 * 4 3 2 6 6 H 1.08999 * 110.60104 * 266.06334 * 5 4 3 7 7 N 1.46901 * 110.48861 * 143.47643 * 5 4 3 8 8 C 1.46902 * 110.99931 * 158.77092 * 7 5 4 9 9 C 1.53001 * 109.47217 * 179.97438 * 8 7 5 10 10 C 1.50694 * 109.47168 * 180.02562 * 9 8 7 11 11 H 1.08000 * 120.00563 * 0.02562 * 10 9 8 12 12 C 1.37885 * 119.99902 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99913 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99766 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47353 * 269.99586 * 14 12 10 16 16 H 1.48501 * 109.47293 * 30.00037 * 14 12 10 17 17 H 1.48504 * 109.46680 * 149.99835 * 14 12 10 18 18 C 1.34421 * 124.34951 * 179.97438 * 2 1 3 19 19 O 1.21284 * 124.94162 * 359.58003 * 18 2 1 20 20 H 1.08995 * 109.47133 * 180.02562 * 1 2 3 21 21 H 1.08995 * 109.47004 * 300.00199 * 1 2 3 22 22 H 1.08999 * 109.46950 * 60.00066 * 1 2 3 23 23 H 1.09006 * 110.24107 * 315.99217 * 3 2 1 24 24 H 1.08991 * 110.24802 * 77.99239 * 3 2 1 25 25 H 1.08999 * 110.97058 * 216.46019 * 4 3 2 26 26 H 1.09005 * 110.97093 * 92.70355 * 4 3 2 27 27 H 1.00900 * 111.00210 * 34.82200 * 7 5 4 28 28 H 1.09002 * 109.46978 * 60.00184 * 8 7 5 29 29 H 1.08998 * 109.47251 * 299.99702 * 8 7 5 30 30 H 1.09007 * 109.46922 * 59.99765 * 9 8 7 31 31 H 1.09003 * 109.46836 * 300.00520 * 9 8 7 32 32 H 0.97001 * 119.99646 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2116 0.0000 4 6 3.7011 0.7485 -0.4352 5 6 3.6898 -0.7379 -0.0093 6 1 4.1197 -0.8551 0.9854 7 7 4.4216 -1.5577 -0.9842 8 6 4.8556 -2.8266 -0.3846 9 6 5.6119 -3.6514 -1.4280 10 6 6.0565 -4.9534 -0.8132 11 1 5.8226 -5.1711 0.2185 12 6 6.7618 -5.8668 -1.5677 13 7 7.0462 -5.6019 -2.8242 14 14 7.3136 -7.4804 -0.8053 15 1 8.6611 -7.3092 -0.2052 16 1 6.3496 -7.8846 0.2495 17 1 7.3685 -8.5301 -1.8543 18 6 2.2234 -1.1098 0.0005 19 8 1.7946 -2.2442 0.0083 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 1.8987 1.9381 -0.7106 24 1 2.3304 1.6431 1.0002 25 1 4.4754 1.3010 0.0972 26 1 3.8273 0.8444 -1.5136 27 1 5.2063 -1.0511 -1.3659 28 1 3.9833 -3.3844 -0.0437 29 1 5.5106 -2.6230 0.4624 30 1 6.4841 -3.0937 -1.7694 31 1 4.9565 -3.8549 -2.2749 32 1 7.5427 -6.2443 -3.3549 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230059478.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:30 Heat of formation + Delta-G solvation = -35.281705 kcal Electronic energy + Delta-G solvation = -13997.164028 eV Core-core repulsion = 11571.488078 eV Total energy + Delta-G solvation = -2425.675950 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.26916 -36.24061 -35.63492 -33.09016 -31.54976 -28.93444 -26.98035 -25.81318 -23.56585 -21.84435 -20.37930 -19.18140 -16.82984 -16.53596 -16.17018 -15.28185 -14.73979 -14.35748 -14.08218 -13.71436 -13.37648 -12.84120 -12.72641 -12.46346 -12.18694 -12.11509 -11.59645 -11.21317 -11.03254 -10.86367 -10.46943 -9.94048 -9.66126 -9.26809 -9.07546 -8.69106 -8.28907 -7.84758 -5.93190 -3.94888 2.81292 3.06986 3.37182 3.43058 3.47977 4.37034 4.44654 4.51084 4.63955 4.96069 5.15292 5.26720 5.29613 5.37222 5.42929 5.50229 5.64671 5.71530 5.90365 6.39001 6.47267 6.59774 7.08052 7.16503 7.42721 7.75715 7.84865 8.00146 8.14268 8.43063 8.51069 9.11991 9.68268 11.18501 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.059400 B = 0.005886 C = 0.005606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.270174 B = 4756.090224 C = 4993.108104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.633 5.633 3 C 0.109 3.891 4 C -0.135 4.135 5 C 0.054 3.946 6 H 0.077 0.923 7 N -0.671 5.671 8 C 0.063 3.937 9 C 0.027 3.973 10 C -0.518 4.518 11 H 0.054 0.946 12 C 0.057 3.943 13 N -0.895 5.895 14 Si 0.893 3.107 15 H -0.281 1.281 16 H -0.274 1.274 17 H -0.286 1.286 18 C 0.527 3.473 19 O -0.512 6.512 20 H 0.081 0.919 21 H 0.056 0.944 22 H 0.058 0.942 23 H 0.076 0.924 24 H 0.068 0.932 25 H 0.089 0.911 26 H 0.092 0.908 27 H 0.343 0.657 28 H 0.071 0.929 29 H 0.016 0.984 30 H 0.013 0.987 31 H 0.026 0.974 32 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.626 16.380 5.755 19.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.370 5.370 3 C -0.014 4.014 4 C -0.174 4.174 5 C -0.060 4.060 6 H 0.094 0.906 7 N -0.304 5.304 8 C -0.065 4.065 9 C -0.011 4.011 10 C -0.557 4.557 11 H 0.073 0.927 12 C -0.144 4.144 13 N -0.534 5.534 14 Si 0.721 3.279 15 H -0.207 1.207 16 H -0.198 1.198 17 H -0.212 1.212 18 C 0.314 3.686 19 O -0.384 6.384 20 H 0.100 0.900 21 H 0.075 0.925 22 H 0.076 0.924 23 H 0.095 0.905 24 H 0.086 0.914 25 H 0.107 0.893 26 H 0.111 0.889 27 H 0.162 0.838 28 H 0.090 0.910 29 H 0.034 0.966 30 H 0.031 0.969 31 H 0.044 0.956 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.426 15.395 5.331 18.823 hybrid contribution 1.015 -0.486 0.908 1.445 sum -8.411 14.909 6.239 18.220 Atomic orbital electron populations 1.21487 0.78516 1.03681 1.00905 1.48120 1.06203 1.07429 1.75261 1.21967 0.90592 0.87503 1.01365 1.22823 0.96433 0.94614 1.03488 1.22149 0.93430 0.93107 0.97351 0.90582 1.60428 1.30198 1.05976 1.33796 1.22328 0.98713 0.88365 0.97095 1.19055 0.94466 0.93548 0.94006 1.21178 1.34728 1.02139 0.97663 0.92730 1.24998 0.96159 0.98400 0.94836 1.69979 1.40235 1.35936 1.07286 0.86577 0.78916 0.83474 0.78938 1.20741 1.19849 1.21211 1.20919 0.89037 0.84187 0.74480 1.90712 1.78317 1.21037 1.48379 0.89993 0.92538 0.92370 0.90537 0.91392 0.89283 0.88907 0.83793 0.91007 0.96607 0.96882 0.95607 0.93063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.98 11.14 59.85 0.67 1.65 16 2 N -0.63 -8.04 3.33 -180.30 -0.60 -8.65 16 3 C 0.11 0.96 7.35 -3.13 -0.02 0.94 16 4 C -0.14 -1.34 6.62 -25.10 -0.17 -1.51 16 5 C 0.05 0.81 3.24 -67.73 -0.22 0.59 16 6 H 0.08 1.11 7.87 -51.93 -0.41 0.71 16 7 N -0.67 -12.54 6.30 -106.74 -0.67 -13.21 16 8 C 0.06 1.43 5.43 -3.82 -0.02 1.41 16 9 C 0.03 0.73 5.23 -27.89 -0.15 0.59 16 10 C -0.52 -15.41 9.11 -34.44 -0.31 -15.72 16 11 H 0.05 1.58 7.74 -52.49 -0.41 1.18 16 12 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 13 N -0.89 -27.76 13.29 55.43 0.74 -27.02 16 14 Si 0.89 22.42 29.54 -169.99 -5.02 17.40 16 15 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.27 -6.78 7.11 56.52 0.40 -6.37 16 17 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 18 C 0.53 9.08 7.64 -10.86 -0.08 9.00 16 19 O -0.51 -11.24 16.27 5.55 0.09 -11.15 16 20 H 0.08 0.98 7.53 -51.93 -0.39 0.59 16 21 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 22 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.09 0.93 8.08 -51.93 -0.42 0.51 16 27 H 0.34 5.71 8.46 -39.29 -0.33 5.38 16 28 H 0.07 1.79 7.12 -51.93 -0.37 1.42 16 29 H 0.02 0.34 8.08 -51.93 -0.42 -0.08 16 30 H 0.01 0.36 8.14 -51.92 -0.42 -0.06 16 31 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 271.47 15.07 4.09 4.09 Total: -1.00 -35.21 271.47 -6.62 -41.83 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: -4.84 Total: -1.83 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -0.40 Total: -1.46 kcal Atomic # 7 Polarization: -48.35 SS G_CDS: -0.54 Total: -48.88 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.09 Total: -11.15 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -35.21 -6.62 -41.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230059478.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.548 kcal (2) G-P(sol) polarization free energy of solvation -35.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds