Wall clock time and date at job start Mon Mar 30 2020 03:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46817 * 2 1 4 4 C 1.53006 * 109.46977 * 240.00269 * 2 1 3 5 5 C 1.52997 * 109.47127 * 299.99541 * 4 2 1 6 6 C 1.53000 * 109.47060 * 300.00449 * 5 4 2 7 7 C 1.52996 * 109.47328 * 60.00126 * 6 5 4 8 8 H 1.08992 * 109.47554 * 59.99639 * 7 6 5 9 9 C 1.52997 * 109.46975 * 180.02562 * 7 6 5 10 10 C 1.50700 * 109.47531 * 294.99745 * 9 7 6 11 11 H 1.08003 * 119.99126 * 359.97438 * 10 9 7 12 12 C 1.37870 * 120.00569 * 180.02562 * 10 9 7 13 13 N 1.31518 * 119.99767 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 120.00315 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.47443 * 89.99785 * 14 12 10 16 16 H 1.48500 * 109.47570 * 209.99622 * 14 12 10 17 17 H 1.48507 * 109.46941 * 329.99851 * 14 12 10 18 18 C 1.52997 * 109.47415 * 120.00127 * 2 1 3 19 19 H 1.09002 * 109.47045 * 300.00068 * 18 2 1 20 20 O 1.42896 * 109.47412 * 180.02562 * 18 2 1 21 21 H 1.08992 * 109.47063 * 299.99823 * 1 2 3 22 22 H 1.08996 * 109.47407 * 60.00219 * 1 2 3 23 23 H 1.09004 * 109.46733 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47289 * 180.02562 * 3 2 1 25 25 H 1.09004 * 109.47261 * 300.00059 * 3 2 1 26 26 H 1.09002 * 109.47153 * 60.00231 * 3 2 1 27 27 H 1.08998 * 109.46505 * 179.97438 * 4 2 1 28 28 H 1.08996 * 109.46884 * 60.00293 * 4 2 1 29 29 H 1.09002 * 109.47153 * 180.02562 * 5 4 2 30 30 H 1.09001 * 109.46832 * 60.00321 * 5 4 2 31 31 H 1.09004 * 109.46724 * 180.02562 * 6 5 4 32 32 H 1.09001 * 109.47194 * 299.99650 * 6 5 4 33 33 H 1.09004 * 109.47610 * 54.99797 * 9 7 6 34 34 H 1.09001 * 109.47532 * 174.99616 * 9 7 6 35 35 H 0.97005 * 119.99608 * 179.97438 * 13 12 10 36 36 H 0.96699 * 114.00604 * 180.02562 * 20 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5301 -2.1637 -1.2493 6 6 2.0401 -2.8849 -0.0001 7 6 1.5301 -2.1638 1.2491 8 1 0.4402 -2.1638 1.2492 9 6 2.0407 -2.8846 2.4983 10 6 1.4404 -4.2655 2.5622 11 1 0.7622 -4.5956 1.7892 12 6 1.7562 -5.1068 3.6078 13 7 2.5817 -4.7045 4.5492 14 14 1.0126 -6.8186 3.6865 15 1 1.8975 -7.7759 2.9753 16 1 0.8740 -7.2334 5.1056 17 1 -0.3248 -6.8075 3.0411 18 6 2.0401 -0.7212 1.2492 19 1 1.6768 -0.2074 2.1392 20 8 3.4690 -0.7207 1.2495 21 1 -0.3633 0.5138 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 3.1299 1.4426 -0.0005 25 1 1.6766 1.9564 -0.8900 26 1 1.6766 1.9563 0.8900 27 1 3.1300 -0.7208 -1.2495 28 1 1.6767 -0.2073 -2.1392 29 1 1.8938 -2.6777 -2.1391 30 1 0.4401 -2.1637 -1.2493 31 1 1.6772 -3.9128 -0.0004 32 1 3.1301 -2.8849 -0.0001 33 1 3.1270 -2.9625 2.4545 34 1 1.7523 -2.3218 3.3861 35 1 2.8035 -5.2964 5.2851 36 1 3.8625 -1.1627 2.0143 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238207998.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:27 Heat of formation + Delta-G solvation = -90.495384 kcal Electronic energy + Delta-G solvation = -15234.485846 eV Core-core repulsion = 12909.955995 eV Total energy + Delta-G solvation = -2324.529851 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.56741 -34.88223 -33.92249 -32.27284 -30.45028 -27.12095 -26.45225 -25.51306 -23.12699 -21.32642 -19.48179 -17.92347 -16.69092 -15.97167 -14.93631 -14.66830 -14.39705 -13.94501 -13.30289 -12.82110 -12.58513 -12.24693 -12.06527 -11.80020 -11.75840 -11.41786 -11.19830 -10.94986 -10.79310 -10.69499 -10.43671 -10.21778 -10.06528 -9.93250 -9.52629 -9.26443 -8.92871 -8.66240 -8.35225 -6.01013 -4.02083 3.31123 3.37714 3.40670 4.45254 4.73347 5.09995 5.15667 5.34282 5.38073 5.59034 5.70694 5.84130 5.89120 5.93797 6.00346 6.07437 6.09118 6.17327 6.23461 6.30189 6.41154 6.44604 6.51596 6.67575 6.78613 6.85314 7.06391 7.13777 7.22277 7.61638 7.78038 7.97367 8.31708 8.43666 9.03521 9.61630 11.10335 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.046362 B = 0.008451 C = 0.007938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.791850 B = 3312.272753 C = 3526.571129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.056 4.056 3 C -0.136 4.136 4 C -0.099 4.099 5 C -0.123 4.123 6 C -0.098 4.098 7 C -0.112 4.112 8 H 0.064 0.936 9 C 0.024 3.976 10 C -0.512 4.512 11 H 0.056 0.944 12 C 0.056 3.944 13 N -0.896 5.896 14 Si 0.890 3.110 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.274 1.274 18 C 0.121 3.879 19 H 0.042 0.958 20 O -0.570 6.570 21 H 0.052 0.948 22 H 0.052 0.948 23 H 0.067 0.933 24 H 0.061 0.939 25 H 0.046 0.954 26 H 0.048 0.952 27 H 0.067 0.933 28 H 0.048 0.952 29 H 0.050 0.950 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.017 0.983 34 H 0.013 0.987 35 H 0.260 0.740 36 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.990 8.313 -8.645 12.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.057 4.057 3 C -0.193 4.193 4 C -0.137 4.137 5 C -0.160 4.160 6 C -0.135 4.135 7 C -0.131 4.131 8 H 0.082 0.918 9 C -0.013 4.013 10 C -0.551 4.551 11 H 0.074 0.926 12 C -0.145 4.145 13 N -0.536 5.536 14 Si 0.718 3.282 15 H -0.207 1.207 16 H -0.213 1.213 17 H -0.199 1.199 18 C 0.062 3.938 19 H 0.060 0.940 20 O -0.377 6.377 21 H 0.071 0.929 22 H 0.071 0.929 23 H 0.086 0.914 24 H 0.080 0.920 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.085 0.915 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.035 0.965 34 H 0.031 0.969 35 H 0.069 0.931 36 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -2.006 8.580 -9.038 12.622 hybrid contribution -0.332 -1.337 0.764 1.575 sum -2.338 7.243 -8.274 11.242 Atomic orbital electron populations 1.21951 0.94537 1.02549 1.01093 1.20497 0.94923 0.94884 0.95347 1.21790 1.01716 0.95249 1.00530 1.21472 1.01126 0.95399 0.95694 1.21650 1.00252 0.95523 0.98590 1.21373 1.00597 0.98991 0.92571 1.21873 0.99997 0.93501 0.97719 0.91751 1.19143 0.96329 0.94944 0.90874 1.21197 1.27074 0.98922 1.07863 0.92610 1.25015 0.95303 0.98410 0.95780 1.69956 1.35115 1.36426 1.12093 0.86633 0.79621 0.84854 0.77134 1.20710 1.21289 1.19937 1.21789 0.80898 0.95687 0.95400 0.93960 1.86288 1.19718 1.81200 1.50485 0.92928 0.92929 0.91443 0.92029 0.93527 0.93277 0.91475 0.93332 0.93105 0.92515 0.91662 0.92320 0.96468 0.96888 0.93066 0.77233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 7.78 37.16 0.29 -1.70 16 2 C -0.06 -0.85 0.60 -154.51 -0.09 -0.95 16 3 C -0.14 -1.85 8.33 37.16 0.31 -1.54 16 4 C -0.10 -1.49 4.59 -26.73 -0.12 -1.61 16 5 C -0.12 -1.94 5.65 -26.73 -0.15 -2.09 16 6 C -0.10 -1.87 4.87 -26.73 -0.13 -2.00 16 7 C -0.11 -2.26 1.70 -90.62 -0.15 -2.41 16 8 H 0.06 1.32 6.43 -51.93 -0.33 0.98 16 9 C 0.02 0.59 4.01 -27.88 -0.11 0.48 16 10 C -0.51 -14.12 8.41 -34.44 -0.29 -14.41 16 11 H 0.06 1.51 7.06 -52.48 -0.37 1.14 16 12 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 13 N -0.90 -26.53 13.29 55.43 0.74 -25.80 16 14 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 15 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 17 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 18 C 0.12 2.15 2.23 -26.73 -0.06 2.09 16 19 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 20 O -0.57 -10.29 11.26 -35.23 -0.40 -10.69 16 21 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 22 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.07 0.99 4.81 -51.93 -0.25 0.74 16 24 H 0.06 0.89 7.68 -51.93 -0.40 0.49 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.07 1.08 7.68 -51.93 -0.40 0.68 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.86 6.43 -51.93 -0.33 0.53 16 31 H 0.06 1.35 6.95 -51.93 -0.36 0.99 16 32 H 0.06 1.18 7.68 -51.93 -0.40 0.78 16 33 H 0.02 0.45 7.03 -51.93 -0.37 0.08 16 34 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.38 6.60 7.49 45.56 0.34 6.94 16 LS Contribution 271.70 15.07 4.09 4.09 Total: -1.00 -28.96 271.70 -6.58 -35.54 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -5.39 Total: 2.96 kcal Atomic # 6 Polarization: -22.05 SS G_CDS: -0.61 Total: -22.66 kcal Atomic # 7 Polarization: -26.53 SS G_CDS: 0.74 Total: -25.80 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: -0.40 Total: -10.69 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -28.96 -6.58 -35.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238207998.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.957 kcal (2) G-P(sol) polarization free energy of solvation -28.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds