Wall clock time and date at job start Mon Mar 30 2020 03:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46817 * 2 1 4 4 C 1.53006 * 109.46977 * 240.00269 * 2 1 3 5 5 C 1.52997 * 109.47127 * 299.99541 * 4 2 1 6 6 C 1.53000 * 109.47060 * 300.00449 * 5 4 2 7 7 C 1.52996 * 109.47328 * 60.00126 * 6 5 4 8 8 H 1.08992 * 109.47554 * 59.99639 * 7 6 5 9 9 C 1.52997 * 109.46975 * 180.02562 * 7 6 5 10 10 C 1.50700 * 109.47531 * 294.99745 * 9 7 6 11 11 H 1.08003 * 119.99126 * 359.97438 * 10 9 7 12 12 C 1.37870 * 120.00569 * 180.02562 * 10 9 7 13 13 N 1.31518 * 119.99767 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 120.00315 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.47443 * 89.99785 * 14 12 10 16 16 H 1.48500 * 109.47570 * 209.99622 * 14 12 10 17 17 H 1.48507 * 109.46941 * 329.99851 * 14 12 10 18 18 C 1.52997 * 109.47415 * 120.00127 * 2 1 3 19 19 H 1.09002 * 109.47045 * 300.00068 * 18 2 1 20 20 O 1.42896 * 109.47412 * 180.02562 * 18 2 1 21 21 H 1.08992 * 109.47063 * 299.99823 * 1 2 3 22 22 H 1.08996 * 109.47407 * 60.00219 * 1 2 3 23 23 H 1.09004 * 109.46733 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47289 * 180.02562 * 3 2 1 25 25 H 1.09004 * 109.47261 * 300.00059 * 3 2 1 26 26 H 1.09002 * 109.47153 * 60.00231 * 3 2 1 27 27 H 1.08998 * 109.46505 * 179.97438 * 4 2 1 28 28 H 1.08996 * 109.46884 * 60.00293 * 4 2 1 29 29 H 1.09002 * 109.47153 * 180.02562 * 5 4 2 30 30 H 1.09001 * 109.46832 * 60.00321 * 5 4 2 31 31 H 1.09004 * 109.46724 * 180.02562 * 6 5 4 32 32 H 1.09001 * 109.47194 * 299.99650 * 6 5 4 33 33 H 1.09004 * 109.47610 * 54.99797 * 9 7 6 34 34 H 1.09001 * 109.47532 * 174.99616 * 9 7 6 35 35 H 0.97005 * 119.99608 * 179.97438 * 13 12 10 36 36 H 0.96699 * 114.00604 * 180.02562 * 20 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5301 -2.1637 -1.2493 6 6 2.0401 -2.8849 -0.0001 7 6 1.5301 -2.1638 1.2491 8 1 0.4402 -2.1638 1.2492 9 6 2.0407 -2.8846 2.4983 10 6 1.4404 -4.2655 2.5622 11 1 0.7622 -4.5956 1.7892 12 6 1.7562 -5.1068 3.6078 13 7 2.5817 -4.7045 4.5492 14 14 1.0126 -6.8186 3.6865 15 1 1.8975 -7.7759 2.9753 16 1 0.8740 -7.2334 5.1056 17 1 -0.3248 -6.8075 3.0411 18 6 2.0401 -0.7212 1.2492 19 1 1.6768 -0.2074 2.1392 20 8 3.4690 -0.7207 1.2495 21 1 -0.3633 0.5138 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 3.1299 1.4426 -0.0005 25 1 1.6766 1.9564 -0.8900 26 1 1.6766 1.9563 0.8900 27 1 3.1300 -0.7208 -1.2495 28 1 1.6767 -0.2073 -2.1392 29 1 1.8938 -2.6777 -2.1391 30 1 0.4401 -2.1637 -1.2493 31 1 1.6772 -3.9128 -0.0004 32 1 3.1301 -2.8849 -0.0001 33 1 3.1270 -2.9625 2.4545 34 1 1.7523 -2.3218 3.3861 35 1 2.8035 -5.2964 5.2851 36 1 3.8625 -1.1627 2.0143 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238207998.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:27 Heat of formation + Delta-G solvation = -108.310463 kcal Electronic energy + Delta-G solvation = -15235.258366 eV Core-core repulsion = 12909.955995 eV Total energy + Delta-G solvation = -2325.302371 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.96325 -36.29285 -35.72308 -34.03262 -32.04722 -28.63527 -27.90166 -26.81919 -25.03746 -22.71420 -21.11432 -19.25707 -18.62851 -17.58817 -16.62530 -16.22039 -16.04031 -15.27823 -14.68709 -14.31310 -14.14030 -13.88464 -13.59812 -13.22751 -13.06934 -12.84080 -12.77888 -12.59535 -12.49150 -12.15259 -11.88186 -11.80060 -11.58343 -11.39152 -11.34783 -10.92101 -10.56905 -10.46246 -10.27988 -8.18865 -6.27418 1.38932 1.39273 1.50102 2.40619 3.14533 3.39981 3.82364 3.91567 4.08057 4.25951 4.36662 4.53447 4.55692 4.64518 4.73037 4.82457 4.87018 4.89292 5.04424 5.06847 5.14545 5.19413 5.24175 5.28799 5.40805 5.46665 5.55026 5.56500 5.57919 5.67207 5.83101 5.88501 6.28777 6.82444 6.88942 7.40607 8.92601 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.046362 B = 0.008451 C = 0.007938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.791850 B = 3312.272753 C = 3526.571129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.057 4.057 3 C -0.131 4.131 4 C -0.096 4.096 5 C -0.116 4.116 6 C -0.094 4.094 7 C -0.103 4.103 8 H 0.063 0.937 9 C 0.031 3.969 10 C -0.528 4.528 11 H 0.058 0.942 12 C -0.001 4.001 13 N -0.932 5.932 14 Si 0.958 3.042 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.264 1.264 18 C 0.121 3.879 19 H 0.035 0.965 20 O -0.572 6.572 21 H 0.054 0.946 22 H 0.078 0.922 23 H 0.055 0.945 24 H 0.049 0.951 25 H 0.071 0.929 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.044 0.956 32 H 0.042 0.958 33 H -0.003 1.003 34 H -0.015 1.015 35 H 0.262 0.738 36 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.142 8.733 -10.361 13.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.057 4.057 3 C -0.188 4.188 4 C -0.133 4.133 5 C -0.154 4.154 6 C -0.132 4.132 7 C -0.121 4.121 8 H 0.081 0.919 9 C -0.006 4.006 10 C -0.566 4.566 11 H 0.076 0.924 12 C -0.198 4.198 13 N -0.573 5.573 14 Si 0.783 3.217 15 H -0.200 1.200 16 H -0.209 1.209 17 H -0.189 1.189 18 C 0.063 3.937 19 H 0.053 0.947 20 O -0.379 6.379 21 H 0.073 0.927 22 H 0.097 0.903 23 H 0.074 0.926 24 H 0.068 0.932 25 H 0.089 0.911 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.015 0.985 34 H 0.004 0.996 35 H 0.070 0.930 36 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -3.162 9.008 -10.768 14.391 hybrid contribution 0.055 -1.457 1.330 1.974 sum -3.107 7.551 -9.438 12.480 Atomic orbital electron populations 1.21946 0.93194 1.02266 1.02549 1.20559 0.95944 0.95510 0.93675 1.21743 1.00945 0.94231 1.01909 1.21456 1.00304 0.94866 0.96700 1.21601 1.00874 0.95913 0.96984 1.21286 0.99556 0.98287 0.94039 1.21722 0.99703 0.94840 0.95876 0.91889 1.19018 0.94987 0.94382 0.92216 1.21595 1.27010 1.00146 1.07852 0.92394 1.25905 0.95768 1.02665 0.95459 1.70084 1.36472 1.37983 1.12768 0.85555 0.79139 0.79750 0.77280 1.20014 1.20887 1.18871 1.21853 0.80567 0.94237 0.97091 0.94739 1.86293 1.20059 1.81058 1.50468 0.92737 0.90293 0.92564 0.93212 0.91054 0.93024 0.92851 0.90390 0.91520 0.91400 0.93700 0.93873 0.98474 0.99625 0.92961 0.77390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.52 7.78 71.98 0.56 -2.96 16 2 C -0.06 -1.59 0.60 -52.18 -0.03 -1.62 16 3 C -0.13 -3.22 8.33 71.98 0.60 -2.62 16 4 C -0.10 -2.59 4.59 30.60 0.14 -2.45 16 5 C -0.12 -3.42 5.65 30.59 0.17 -3.24 16 6 C -0.09 -3.60 4.87 30.59 0.15 -3.45 16 7 C -0.10 -4.18 1.70 -10.80 -0.02 -4.20 16 8 H 0.06 2.58 6.43 -2.39 -0.02 2.56 16 9 C 0.03 1.59 4.01 29.85 0.12 1.71 16 10 C -0.53 -29.68 8.41 25.60 0.22 -29.46 16 11 H 0.06 3.16 7.06 -2.91 -0.02 3.14 16 12 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 13 N -0.93 -56.45 13.29 21.45 0.28 -56.16 16 14 Si 0.96 44.45 29.54 68.60 2.03 46.48 16 15 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 16 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 17 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 18 C 0.12 4.29 2.23 30.59 0.07 4.35 16 19 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 20 O -0.57 -20.91 11.26 -148.98 -1.68 -22.59 16 21 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 22 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 23 H 0.06 1.51 4.81 -2.39 -0.01 1.50 16 24 H 0.05 1.34 7.68 -2.39 -0.02 1.32 16 25 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 26 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.05 1.61 7.68 -2.39 -0.02 1.59 16 28 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.07 1.87 6.43 -2.39 -0.02 1.85 16 31 H 0.04 1.86 6.95 -2.39 -0.02 1.85 16 32 H 0.04 1.75 7.68 -2.39 -0.02 1.73 16 33 H 0.00 -0.17 7.03 -2.39 -0.02 -0.18 16 34 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 35 H 0.26 14.97 8.31 -92.70 -0.77 14.20 16 36 H 0.38 13.78 7.49 -74.06 -0.55 13.23 16 Total: -1.00 -62.21 271.70 3.56 -58.65 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: 0.49 Total: 17.12 kcal Atomic # 6 Polarization: -45.94 SS G_CDS: 2.44 Total: -43.51 kcal Atomic # 7 Polarization: -56.45 SS G_CDS: 0.28 Total: -56.16 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: -1.68 Total: -22.59 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -62.21 3.56 -58.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238207998.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.660 kcal (2) G-P(sol) polarization free energy of solvation -62.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds