Wall clock time and date at job start Mon Mar 30 2020 03:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47220 * 2 1 4 4 C 1.53004 * 109.47574 * 239.99723 * 2 1 3 5 5 C 1.52992 * 109.47106 * 180.02562 * 4 2 1 6 6 C 1.53004 * 109.47359 * 60.00221 * 5 4 2 7 7 C 1.52996 * 109.46940 * 300.00116 * 6 5 4 8 8 H 1.09004 * 109.46613 * 299.99352 * 7 6 5 9 9 C 1.53004 * 109.46940 * 180.02562 * 7 6 5 10 10 C 1.50700 * 109.47208 * 64.99519 * 9 7 6 11 11 H 1.08002 * 119.99770 * 0.02562 * 10 9 7 12 12 C 1.37871 * 120.00083 * 180.02562 * 10 9 7 13 13 N 1.31514 * 120.00147 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00278 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47228 * 179.97438 * 14 12 10 16 16 H 1.48501 * 109.46793 * 300.00001 * 14 12 10 17 17 H 1.48500 * 109.47000 * 60.00094 * 14 12 10 18 18 C 1.52993 * 109.47519 * 59.99595 * 7 6 5 19 19 H 1.09005 * 109.47372 * 179.97438 * 18 7 6 20 20 O 1.42908 * 109.47018 * 60.00131 * 18 7 6 21 21 H 1.09000 * 109.47321 * 300.00356 * 1 2 3 22 22 H 1.09004 * 109.46778 * 60.00366 * 1 2 3 23 23 H 1.08998 * 109.47395 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47263 * 179.97438 * 3 2 1 25 25 H 1.08990 * 109.47331 * 299.99904 * 3 2 1 26 26 H 1.09005 * 109.46862 * 60.00209 * 3 2 1 27 27 H 1.09004 * 109.46805 * 300.00620 * 4 2 1 28 28 H 1.08998 * 109.46497 * 59.99980 * 4 2 1 29 29 H 1.09005 * 109.47041 * 180.02562 * 5 4 2 30 30 H 1.09004 * 109.47693 * 299.99951 * 5 4 2 31 31 H 1.09000 * 109.47255 * 179.97438 * 6 5 4 32 32 H 1.09005 * 109.46551 * 59.99937 * 6 5 4 33 33 H 1.08994 * 109.47074 * 304.99828 * 9 7 6 34 34 H 1.08998 * 109.47285 * 184.99664 * 9 7 6 35 35 H 0.97005 * 119.99661 * 359.97438 * 13 12 10 36 36 H 0.96695 * 113.99605 * 59.99679 * 20 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5700 -0.7218 -1.2488 6 6 4.0795 -1.4434 0.0005 7 6 3.5694 -0.7222 1.2497 8 1 3.9332 0.3054 1.2499 9 6 4.0794 -1.4434 2.4990 10 6 5.5813 -1.3371 2.5625 11 1 6.1183 -0.8076 1.7893 12 6 6.2698 -1.9156 3.6075 13 7 5.6159 -2.5608 4.5487 14 14 8.1315 -1.7832 3.6867 15 1 8.6264 -2.4833 4.8991 16 1 8.7240 -2.4083 2.4769 17 1 8.5238 -0.3523 3.7471 18 6 2.0395 -0.7216 1.2493 19 1 1.6760 -0.2081 2.1395 20 8 1.5626 -2.0688 1.2490 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0276 -0.0005 24 1 3.1300 1.4425 0.0005 25 1 1.6768 1.9563 -0.8899 26 1 1.6767 1.9563 0.8901 27 1 1.6767 -1.7490 -1.2492 28 1 1.6768 -0.2075 -2.1391 29 1 3.9334 -1.2353 -2.1390 30 1 3.9338 0.3057 -1.2486 31 1 5.1695 -1.4441 0.0006 32 1 3.7158 -2.4710 0.0002 33 1 3.7911 -2.4936 2.4553 34 1 3.6448 -0.9839 3.3867 35 1 4.6492 -2.6292 4.5078 36 1 1.8476 -2.5870 2.0140 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238214716.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:31 Heat of formation + Delta-G solvation = -94.132162 kcal Electronic energy + Delta-G solvation = -15271.517870 eV Core-core repulsion = 12946.830317 eV Total energy + Delta-G solvation = -2324.687554 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.66420 -35.00569 -34.15802 -32.39556 -30.40731 -27.10653 -26.16446 -25.58942 -23.05582 -21.43573 -19.77534 -18.00678 -16.89797 -16.19120 -15.08150 -14.87530 -14.06671 -13.71346 -13.39730 -12.96434 -12.65898 -12.57902 -12.09859 -11.88381 -11.71386 -11.49085 -11.40698 -10.96038 -10.77882 -10.60983 -10.39837 -10.25526 -10.10430 -10.04294 -9.53258 -9.19676 -9.10161 -8.41473 -8.31780 -6.35033 -4.03577 3.43759 3.45345 3.63985 4.54603 4.63664 5.02328 5.08381 5.28894 5.40565 5.52503 5.63280 5.77113 5.81931 5.85349 5.91349 5.99534 6.02112 6.09557 6.15993 6.23077 6.33906 6.36727 6.44274 6.58044 6.70938 6.75820 6.95835 7.00451 7.11964 7.33662 7.52532 8.17811 8.25026 8.46885 8.89627 9.67456 11.05143 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.046243 B = 0.008501 C = 0.007978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.347864 B = 3292.974141 C = 3508.635283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.056 4.056 3 C -0.144 4.144 4 C -0.100 4.100 5 C -0.123 4.123 6 C -0.097 4.097 7 C -0.105 4.105 8 H 0.066 0.934 9 C 0.011 3.989 10 C -0.593 4.593 11 H 0.049 0.951 12 C 0.013 3.987 13 N -0.914 5.914 14 Si 1.066 2.934 15 H -0.283 1.283 16 H -0.288 1.288 17 H -0.289 1.289 18 C 0.119 3.881 19 H 0.042 0.958 20 O -0.568 6.568 21 H 0.048 0.952 22 H 0.047 0.953 23 H 0.061 0.939 24 H 0.066 0.934 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.067 0.933 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.008 0.992 34 H 0.003 0.997 35 H 0.267 0.733 36 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.175 4.954 -9.170 12.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.056 4.056 3 C -0.202 4.202 4 C -0.137 4.137 5 C -0.160 4.160 6 C -0.135 4.135 7 C -0.124 4.124 8 H 0.084 0.916 9 C -0.026 4.026 10 C -0.631 4.631 11 H 0.068 0.932 12 C -0.190 4.190 13 N -0.551 5.551 14 Si 0.895 3.105 15 H -0.208 1.208 16 H -0.215 1.215 17 H -0.215 1.215 18 C 0.061 3.939 19 H 0.060 0.940 20 O -0.375 6.375 21 H 0.067 0.933 22 H 0.066 0.934 23 H 0.080 0.920 24 H 0.085 0.915 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.085 0.915 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.026 0.974 34 H 0.021 0.979 35 H 0.078 0.922 36 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -6.120 4.726 -8.830 11.737 hybrid contribution -1.042 0.323 -0.320 1.137 sum -7.162 5.048 -9.150 12.669 Atomic orbital electron populations 1.21790 0.94889 1.02004 1.00610 1.20491 0.95143 0.94746 0.95214 1.21953 1.02131 0.94891 1.01175 1.21477 0.95875 1.00646 0.95722 1.21646 0.95296 1.00514 0.98540 1.21361 1.00692 0.98898 0.92504 1.21741 0.93027 1.00335 0.97271 0.91607 1.19268 0.97200 0.94569 0.91557 1.21994 0.91720 1.38236 1.11186 0.93247 1.25818 1.06813 0.93631 0.92763 1.70798 1.10236 1.39980 1.34066 0.83577 0.74587 0.76234 0.76122 1.20814 1.21476 1.21527 1.21828 0.93946 0.82577 0.95584 0.94005 1.86312 1.76789 1.24129 1.50253 0.93267 0.93410 0.92023 0.91467 0.92789 0.92932 0.91474 0.93187 0.92978 0.92461 0.91535 0.92429 0.97403 0.97859 0.92241 0.77511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 8.33 37.16 0.31 -1.53 16 2 C -0.06 -0.84 0.60 -154.50 -0.09 -0.94 16 3 C -0.14 -1.99 7.78 37.16 0.29 -1.70 16 4 C -0.10 -1.49 4.59 -26.73 -0.12 -1.61 16 5 C -0.12 -1.94 5.65 -26.73 -0.15 -2.10 16 6 C -0.10 -1.88 4.87 -26.73 -0.13 -2.01 16 7 C -0.11 -2.13 1.69 -90.62 -0.15 -2.29 16 8 H 0.07 1.37 6.43 -51.93 -0.33 1.04 16 9 C 0.01 0.27 3.32 -27.88 -0.09 0.18 16 10 C -0.59 -16.58 8.41 -34.44 -0.29 -16.86 16 11 H 0.05 1.37 7.06 -52.49 -0.37 1.00 16 12 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16 13 N -0.91 -27.84 13.65 55.43 0.76 -27.09 16 14 Si 1.07 25.35 29.90 -169.99 -5.08 20.27 16 15 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 18 C 0.12 2.12 2.24 -26.73 -0.06 2.06 16 19 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 20 O -0.57 -10.19 11.26 -35.23 -0.40 -10.59 16 21 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.06 0.88 7.68 -51.93 -0.40 0.48 16 24 H 0.07 0.99 4.81 -51.93 -0.25 0.74 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 1.08 7.68 -51.93 -0.40 0.68 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.87 6.43 -51.93 -0.33 0.54 16 31 H 0.07 1.41 6.95 -51.93 -0.36 1.05 16 32 H 0.06 1.17 7.68 -51.93 -0.40 0.77 16 33 H 0.01 0.20 6.90 -51.93 -0.36 -0.16 16 34 H 0.00 0.08 8.01 -51.93 -0.42 -0.33 16 35 H 0.27 8.05 7.22 -40.82 -0.29 7.76 16 36 H 0.38 6.45 7.49 45.56 0.34 6.79 16 LS Contribution 270.40 15.07 4.07 4.07 Total: -1.00 -29.83 270.40 -6.57 -36.40 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -5.33 Total: 3.47 kcal Atomic # 6 Polarization: -25.94 SS G_CDS: -0.59 Total: -26.53 kcal Atomic # 7 Polarization: -27.84 SS G_CDS: 0.76 Total: -27.09 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: -0.40 Total: -10.59 kcal Atomic # 14 Polarization: 25.35 SS G_CDS: -5.08 Total: 20.27 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -29.83 -6.57 -36.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238214716.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.736 kcal (2) G-P(sol) polarization free energy of solvation -29.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds