Wall clock time and date at job start Mon Mar 30 2020 03:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47220 * 2 1 4 4 C 1.53004 * 109.47574 * 239.99723 * 2 1 3 5 5 C 1.52992 * 109.47106 * 180.02562 * 4 2 1 6 6 C 1.53004 * 109.47359 * 60.00221 * 5 4 2 7 7 C 1.52996 * 109.46940 * 300.00116 * 6 5 4 8 8 H 1.09004 * 109.46613 * 299.99352 * 7 6 5 9 9 C 1.53004 * 109.46940 * 180.02562 * 7 6 5 10 10 C 1.50700 * 109.47208 * 64.99519 * 9 7 6 11 11 H 1.08002 * 119.99770 * 0.02562 * 10 9 7 12 12 C 1.37871 * 120.00083 * 180.02562 * 10 9 7 13 13 N 1.31514 * 120.00147 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00278 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47228 * 179.97438 * 14 12 10 16 16 H 1.48501 * 109.46793 * 300.00001 * 14 12 10 17 17 H 1.48500 * 109.47000 * 60.00094 * 14 12 10 18 18 C 1.52993 * 109.47519 * 59.99595 * 7 6 5 19 19 H 1.09005 * 109.47372 * 179.97438 * 18 7 6 20 20 O 1.42908 * 109.47018 * 60.00131 * 18 7 6 21 21 H 1.09000 * 109.47321 * 300.00356 * 1 2 3 22 22 H 1.09004 * 109.46778 * 60.00366 * 1 2 3 23 23 H 1.08998 * 109.47395 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47263 * 179.97438 * 3 2 1 25 25 H 1.08990 * 109.47331 * 299.99904 * 3 2 1 26 26 H 1.09005 * 109.46862 * 60.00209 * 3 2 1 27 27 H 1.09004 * 109.46805 * 300.00620 * 4 2 1 28 28 H 1.08998 * 109.46497 * 59.99980 * 4 2 1 29 29 H 1.09005 * 109.47041 * 180.02562 * 5 4 2 30 30 H 1.09004 * 109.47693 * 299.99951 * 5 4 2 31 31 H 1.09000 * 109.47255 * 179.97438 * 6 5 4 32 32 H 1.09005 * 109.46551 * 59.99937 * 6 5 4 33 33 H 1.08994 * 109.47074 * 304.99828 * 9 7 6 34 34 H 1.08998 * 109.47285 * 184.99664 * 9 7 6 35 35 H 0.97005 * 119.99661 * 359.97438 * 13 12 10 36 36 H 0.96695 * 113.99605 * 59.99679 * 20 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5700 -0.7218 -1.2488 6 6 4.0795 -1.4434 0.0005 7 6 3.5694 -0.7222 1.2497 8 1 3.9332 0.3054 1.2499 9 6 4.0794 -1.4434 2.4990 10 6 5.5813 -1.3371 2.5625 11 1 6.1183 -0.8076 1.7893 12 6 6.2698 -1.9156 3.6075 13 7 5.6159 -2.5608 4.5487 14 14 8.1315 -1.7832 3.6867 15 1 8.6264 -2.4833 4.8991 16 1 8.7240 -2.4083 2.4769 17 1 8.5238 -0.3523 3.7471 18 6 2.0395 -0.7216 1.2493 19 1 1.6760 -0.2081 2.1395 20 8 1.5626 -2.0688 1.2490 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0276 -0.0005 24 1 3.1300 1.4425 0.0005 25 1 1.6768 1.9563 -0.8899 26 1 1.6767 1.9563 0.8901 27 1 1.6767 -1.7490 -1.2492 28 1 1.6768 -0.2075 -2.1391 29 1 3.9334 -1.2353 -2.1390 30 1 3.9338 0.3057 -1.2486 31 1 5.1695 -1.4441 0.0006 32 1 3.7158 -2.4710 0.0002 33 1 3.7911 -2.4936 2.4553 34 1 3.6448 -0.9839 3.3867 35 1 4.6492 -2.6292 4.5078 36 1 1.8476 -2.5870 2.0140 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238214716.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:30 Heat of formation + Delta-G solvation = -112.771207 kcal Electronic energy + Delta-G solvation = -15272.326120 eV Core-core repulsion = 12946.830317 eV Total energy + Delta-G solvation = -2325.495803 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.06754 -36.44550 -35.99674 -34.10317 -32.00830 -28.39587 -27.83795 -26.90192 -25.07269 -22.83047 -21.41424 -19.35474 -18.88344 -17.76810 -16.67197 -16.19916 -15.65641 -15.39430 -14.90927 -14.45504 -14.29042 -14.00759 -13.61624 -13.37711 -13.11359 -12.93675 -12.83360 -12.53756 -12.23761 -12.10864 -11.94968 -11.90566 -11.67903 -11.46073 -11.03812 -11.01595 -10.61643 -10.51522 -10.27071 -8.66280 -6.35624 1.50657 1.58705 1.77732 2.55917 3.16842 3.30116 3.73027 3.82906 3.99127 4.16371 4.27107 4.43231 4.46013 4.55262 4.63960 4.72124 4.76525 4.83111 4.95183 4.98307 5.05831 5.08084 5.14969 5.18875 5.24715 5.38296 5.43971 5.48354 5.50793 5.53800 5.73686 6.04291 6.20514 6.60819 6.73197 7.44237 8.74344 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.046243 B = 0.008501 C = 0.007978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.347864 B = 3292.974141 C = 3508.635283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.056 4.056 3 C -0.143 4.143 4 C -0.096 4.096 5 C -0.116 4.116 6 C -0.093 4.093 7 C -0.097 4.097 8 H 0.062 0.938 9 C 0.015 3.985 10 C -0.604 4.604 11 H 0.049 0.951 12 C -0.041 4.041 13 N -0.940 5.940 14 Si 1.113 2.887 15 H -0.284 1.284 16 H -0.270 1.270 17 H -0.270 1.270 18 C 0.121 3.879 19 H 0.035 0.965 20 O -0.570 6.570 21 H 0.051 0.949 22 H 0.072 0.928 23 H 0.049 0.951 24 H 0.054 0.946 25 H 0.080 0.920 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.042 0.958 32 H 0.042 0.958 33 H -0.007 1.007 34 H -0.019 1.019 35 H 0.255 0.745 36 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.322 6.235 -10.999 14.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.056 4.056 3 C -0.200 4.200 4 C -0.133 4.133 5 C -0.153 4.153 6 C -0.131 4.131 7 C -0.115 4.115 8 H 0.080 0.920 9 C -0.022 4.022 10 C -0.642 4.642 11 H 0.068 0.932 12 C -0.238 4.238 13 N -0.578 5.578 14 Si 0.935 3.065 15 H -0.210 1.210 16 H -0.196 1.196 17 H -0.195 1.195 18 C 0.062 3.938 19 H 0.053 0.947 20 O -0.377 6.377 21 H 0.070 0.930 22 H 0.091 0.909 23 H 0.068 0.932 24 H 0.073 0.927 25 H 0.099 0.901 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.011 0.989 34 H 0.000 1.000 35 H 0.064 0.936 36 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -6.290 6.016 -10.678 13.776 hybrid contribution -1.024 -0.092 0.267 1.062 sum -7.315 5.924 -10.411 14.035 Atomic orbital electron populations 1.21744 0.93344 1.01717 1.02016 1.20559 0.96397 0.95152 0.93533 1.21949 1.01319 0.94048 1.02660 1.21462 0.94817 1.00280 0.96776 1.21599 0.96199 1.00676 0.96869 1.21275 0.99171 0.98539 0.94098 1.21617 0.95127 0.99338 0.95451 0.91967 1.19189 0.95882 0.94068 0.93065 1.22396 0.93381 1.37541 1.10901 0.93230 1.27336 1.11165 0.92902 0.92414 1.70926 1.09646 1.41898 1.35349 0.82983 0.69510 0.77391 0.76652 1.20998 1.19574 1.19492 1.21880 0.91938 0.82686 0.97317 0.94696 1.86317 1.76655 1.24396 1.50304 0.92997 0.90908 0.93169 0.92705 0.90098 0.92743 0.92811 0.90169 0.91377 0.91391 0.93873 0.93948 0.98870 1.00039 0.93565 0.77558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 8.33 71.98 0.60 -2.57 16 2 C -0.06 -1.57 0.60 -52.18 -0.03 -1.60 16 3 C -0.14 -3.51 7.78 71.98 0.56 -2.95 16 4 C -0.10 -2.58 4.59 30.59 0.14 -2.44 16 5 C -0.12 -3.42 5.65 30.59 0.17 -3.25 16 6 C -0.09 -3.60 4.87 30.59 0.15 -3.45 16 7 C -0.10 -3.96 1.69 -10.80 -0.02 -3.98 16 8 H 0.06 2.59 6.43 -2.38 -0.02 2.57 16 9 C 0.01 0.76 3.32 29.85 0.10 0.86 16 10 C -0.60 -34.39 8.41 25.60 0.22 -34.17 16 11 H 0.05 2.76 7.06 -2.91 -0.02 2.74 16 12 C -0.04 -2.40 5.46 84.65 0.46 -1.94 16 13 N -0.94 -58.64 13.65 21.45 0.29 -58.35 16 14 Si 1.11 50.81 29.90 68.60 2.05 52.87 16 15 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 16 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 17 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 18 C 0.12 4.23 2.24 30.59 0.07 4.30 16 19 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 20 O -0.57 -20.58 11.26 -148.98 -1.68 -22.26 16 21 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 22 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 23 H 0.05 1.33 7.68 -2.39 -0.02 1.31 16 24 H 0.05 1.48 4.81 -2.39 -0.01 1.47 16 25 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 27 H 0.05 1.61 7.68 -2.38 -0.02 1.59 16 28 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 30 H 0.07 1.88 6.43 -2.38 -0.02 1.87 16 31 H 0.04 1.83 6.95 -2.39 -0.02 1.82 16 32 H 0.04 1.73 7.68 -2.38 -0.02 1.72 16 33 H -0.01 -0.37 6.90 -2.39 -0.02 -0.39 16 34 H -0.02 -1.03 8.01 -2.39 -0.02 -1.05 16 35 H 0.25 16.00 7.22 -92.70 -0.67 15.33 16 36 H 0.38 13.41 7.49 -74.06 -0.55 12.85 16 Total: -1.00 -64.37 270.40 3.67 -60.70 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: 0.59 Total: 18.24 kcal Atomic # 6 Polarization: -53.61 SS G_CDS: 2.42 Total: -51.19 kcal Atomic # 7 Polarization: -58.64 SS G_CDS: 0.29 Total: -58.35 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -1.68 Total: -22.26 kcal Atomic # 14 Polarization: 50.81 SS G_CDS: 2.05 Total: 52.87 kcal Total: -64.37 3.67 -60.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238214716.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.071 kcal (2) G-P(sol) polarization free energy of solvation -64.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds