Wall clock time and date at job start Mon Mar 30 2020 03:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47164 * 2 1 4 4 C 1.52997 * 109.47232 * 239.99901 * 2 1 3 5 5 C 1.53005 * 109.47452 * 179.97438 * 4 2 1 6 6 C 1.52999 * 109.47159 * 59.99536 * 5 4 2 7 7 C 1.52997 * 109.47317 * 300.00546 * 6 5 4 8 8 H 1.09002 * 109.47153 * 299.99641 * 7 6 5 9 9 C 1.53002 * 109.46817 * 179.97438 * 7 6 5 10 10 C 1.50696 * 109.47344 * 64.99877 * 9 7 6 11 11 H 1.08002 * 119.99611 * 0.02562 * 10 9 7 12 12 C 1.37875 * 119.99982 * 179.97438 * 10 9 7 13 13 N 1.31514 * 119.99909 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 119.99930 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.47225 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.47325 * 119.99854 * 14 12 10 17 17 H 1.48501 * 109.47446 * 240.00057 * 14 12 10 18 18 C 1.53000 * 109.47060 * 59.99960 * 7 6 5 19 19 H 1.08992 * 109.47399 * 59.99823 * 18 7 6 20 20 O 1.42903 * 109.46726 * 180.02562 * 18 7 6 21 21 H 1.09000 * 109.47140 * 299.99948 * 1 2 3 22 22 H 1.09001 * 109.46922 * 60.00249 * 1 2 3 23 23 H 1.09002 * 109.47045 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46801 * 180.02562 * 3 2 1 25 25 H 1.08998 * 109.46505 * 299.99708 * 3 2 1 26 26 H 1.09000 * 109.47050 * 59.99996 * 3 2 1 27 27 H 1.09002 * 109.47153 * 299.99992 * 4 2 1 28 28 H 1.09001 * 109.47289 * 60.00075 * 4 2 1 29 29 H 1.09000 * 109.47360 * 180.02562 * 5 4 2 30 30 H 1.09002 * 109.46935 * 300.00125 * 5 4 2 31 31 H 1.08996 * 109.46929 * 179.97438 * 6 5 4 32 32 H 1.09002 * 109.46716 * 60.00455 * 6 5 4 33 33 H 1.09008 * 109.46873 * 184.99985 * 9 7 6 34 34 H 1.08997 * 109.47047 * 304.99674 * 9 7 6 35 35 H 0.97003 * 119.99535 * 179.97438 * 13 12 10 36 36 H 0.96696 * 114.00096 * 299.99534 * 20 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7207 -1.2496 6 6 4.0806 -1.4415 -0.0003 7 6 3.5706 -0.7202 1.2489 8 1 3.9335 0.3076 1.2487 9 6 4.0807 -1.4415 2.4981 10 6 5.5825 -1.3351 2.5616 11 1 6.1195 -0.8056 1.7884 12 6 6.2710 -1.9128 3.6072 13 7 5.6170 -2.5571 4.5489 14 14 8.1326 -1.7803 3.6862 15 1 8.6242 -1.0099 2.5156 16 1 8.5267 -1.0840 4.9372 17 1 8.7269 -3.1411 3.6688 18 6 2.0406 -0.7209 1.2492 19 1 1.6777 -1.7486 1.2495 20 8 1.5643 -0.0467 2.4157 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 3.1300 1.4425 -0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9564 0.8900 27 1 1.6767 -1.7489 -1.2492 28 1 1.6767 -0.2074 -2.1392 29 1 3.9334 -1.2342 -2.1398 30 1 3.9330 0.3071 -1.2498 31 1 5.1706 -1.4415 -0.0008 32 1 3.7176 -2.4693 -0.0001 33 1 3.6460 -0.9819 3.3859 34 1 3.7923 -2.4917 2.4545 35 1 6.1015 -2.9638 5.2843 36 1 1.8499 -0.4496 3.2470 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238214734.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:33 Heat of formation + Delta-G solvation = -109.185446 kcal Electronic energy + Delta-G solvation = -15192.133627 eV Core-core repulsion = 12866.793314 eV Total energy + Delta-G solvation = -2325.340313 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.91706 -36.50794 -35.84389 -34.04763 -31.71708 -28.54062 -28.11392 -26.91775 -25.07313 -22.50378 -21.17760 -19.41107 -18.70978 -17.70113 -16.63695 -16.03879 -15.64119 -15.33330 -15.17845 -14.30527 -14.09074 -13.89684 -13.65442 -13.24106 -13.02168 -12.90674 -12.77591 -12.59147 -12.51686 -12.20345 -11.85039 -11.81942 -11.60494 -11.37529 -11.14712 -11.00083 -10.67055 -10.52178 -10.28941 -8.19436 -6.27932 1.37715 1.38783 1.51034 2.40250 3.13908 3.39289 3.79918 3.83962 4.15980 4.24081 4.37197 4.45712 4.54834 4.57902 4.60048 4.82184 4.90489 4.94764 5.07062 5.13155 5.14360 5.15264 5.22533 5.23994 5.37835 5.44984 5.50911 5.55585 5.59901 5.64538 5.82095 5.87784 6.28345 6.80645 6.88566 7.40131 8.92227 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.044669 B = 0.008577 C = 0.007828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.678144 B = 3263.800912 C = 3576.040805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.057 4.057 3 C -0.135 4.135 4 C -0.101 4.101 5 C -0.118 4.118 6 C -0.101 4.101 7 C -0.101 4.101 8 H 0.056 0.944 9 C 0.030 3.970 10 C -0.527 4.527 11 H 0.057 0.943 12 C 0.000 4.000 13 N -0.932 5.932 14 Si 0.958 3.042 15 H -0.264 1.264 16 H -0.280 1.280 17 H -0.279 1.279 18 C 0.121 3.879 19 H 0.036 0.964 20 O -0.577 6.577 21 H 0.048 0.952 22 H 0.072 0.928 23 H 0.052 0.948 24 H 0.050 0.950 25 H 0.070 0.930 26 H 0.044 0.956 27 H 0.063 0.937 28 H 0.089 0.911 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.049 0.951 32 H 0.046 0.954 33 H -0.004 1.004 34 H -0.012 1.012 35 H 0.262 0.738 36 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.206 4.372 -11.280 14.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.057 4.057 3 C -0.192 4.192 4 C -0.139 4.139 5 C -0.155 4.155 6 C -0.139 4.139 7 C -0.120 4.120 8 H 0.074 0.926 9 C -0.007 4.007 10 C -0.565 4.565 11 H 0.075 0.925 12 C -0.198 4.198 13 N -0.573 5.573 14 Si 0.783 3.217 15 H -0.188 1.188 16 H -0.206 1.206 17 H -0.205 1.205 18 C 0.062 3.938 19 H 0.054 0.946 20 O -0.385 6.385 21 H 0.067 0.933 22 H 0.091 0.909 23 H 0.071 0.929 24 H 0.069 0.931 25 H 0.089 0.911 26 H 0.063 0.937 27 H 0.081 0.919 28 H 0.107 0.893 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.014 0.986 34 H 0.006 0.994 35 H 0.071 0.929 36 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -7.458 4.668 -11.582 14.545 hybrid contribution 1.377 -0.689 1.270 1.996 sum -6.080 3.979 -10.313 12.615 Atomic orbital electron populations 1.21746 0.93456 1.01680 1.01971 1.20572 0.96304 0.95965 0.92834 1.21833 1.00790 0.95010 1.01528 1.21581 0.95070 1.00521 0.96678 1.21626 0.96023 1.00809 0.97059 1.21397 1.00093 0.98409 0.93982 1.21729 0.94984 0.99213 0.96088 0.92579 1.19037 0.95140 0.93758 0.92766 1.21609 0.93469 1.33548 1.07871 0.92466 1.25904 1.03318 0.95110 0.95456 1.70088 1.37311 1.37109 1.12783 0.85500 0.80031 0.77934 0.78224 1.18768 1.20575 1.20484 1.21874 0.92171 0.93913 0.85797 0.94572 1.86302 1.76802 1.58620 1.16756 0.93321 0.90943 0.92905 0.93132 0.91102 0.93697 0.91854 0.89298 0.90644 0.91704 0.93186 0.93506 0.98592 0.99389 0.92947 0.77185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.24 8.33 71.98 0.60 -2.64 16 2 C -0.06 -1.60 0.60 -52.18 -0.03 -1.63 16 3 C -0.13 -3.75 7.63 71.98 0.55 -3.20 16 4 C -0.10 -2.46 4.73 30.60 0.14 -2.32 16 5 C -0.12 -3.24 5.65 30.60 0.17 -3.06 16 6 C -0.10 -3.72 5.01 30.59 0.15 -3.56 16 7 C -0.10 -4.16 1.61 -10.79 -0.02 -4.18 16 8 H 0.06 2.42 6.43 -2.39 -0.02 2.41 16 9 C 0.03 1.55 4.27 29.85 0.13 1.67 16 10 C -0.53 -29.70 8.41 25.60 0.22 -29.49 16 11 H 0.06 3.14 7.06 -2.91 -0.02 3.12 16 12 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 13 N -0.93 -56.43 13.29 21.45 0.28 -56.15 16 14 Si 0.96 44.54 29.54 68.60 2.03 46.56 16 15 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 16 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 17 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 18 C 0.12 4.33 2.09 30.60 0.06 4.39 16 19 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 20 O -0.58 -21.61 11.93 -148.98 -1.78 -23.39 16 21 H 0.05 1.32 7.68 -2.39 -0.02 1.31 16 22 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.05 1.52 4.80 -2.39 -0.01 1.51 16 25 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.04 1.37 7.68 -2.39 -0.02 1.35 16 27 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.06 1.76 6.43 -2.39 -0.02 1.75 16 31 H 0.05 2.02 6.95 -2.39 -0.02 2.00 16 32 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.00 -0.23 6.54 -2.38 -0.02 -0.24 16 34 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 35 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 36 H 0.38 14.07 7.26 -74.06 -0.54 13.53 16 Total: -1.00 -62.70 272.26 3.48 -59.22 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: 0.51 Total: 17.34 kcal Atomic # 6 Polarization: -46.03 SS G_CDS: 2.44 Total: -43.59 kcal Atomic # 7 Polarization: -56.43 SS G_CDS: 0.28 Total: -56.15 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: -1.78 Total: -23.39 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.56 kcal Total: -62.70 3.48 -59.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238214734.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.962 kcal (2) G-P(sol) polarization free energy of solvation -62.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds