Wall clock time and date at job start Mon Mar 30 2020 03:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.47151 * 54.99917 * 10 9 7 12 12 C 1.53015 * 109.46880 * 294.99939 * 10 9 7 13 13 C 1.52991 * 109.45972 * 164.04249 * 12 10 9 14 14 C 1.52987 * 109.51195 * 315.99238 * 13 12 10 15 15 C 1.53008 * 109.46882 * 112.93442 * 14 13 12 16 16 C 1.53005 * 109.43046 * 284.03809 * 15 14 13 17 17 H 1.09003 * 109.47177 * 315.96335 * 16 15 14 18 18 O 1.42897 * 109.46990 * 195.96771 * 16 15 14 19 19 C 1.52992 * 109.48327 * 75.96705 * 16 15 14 20 20 C 1.52992 * 109.50559 * 247.06412 * 19 16 15 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 23 23 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 24 24 H 1.08995 * 109.47438 * 284.04004 * 12 10 9 25 25 H 1.09002 * 109.46866 * 44.05105 * 12 10 9 26 26 H 1.08995 * 109.46852 * 195.97650 * 13 12 10 27 27 H 1.09010 * 109.45536 * 75.99464 * 13 12 10 28 28 H 1.08993 * 109.46846 * 352.93503 * 14 13 12 29 29 H 1.08998 * 109.47127 * 232.93363 * 14 13 12 30 30 H 1.09008 * 109.47573 * 164.05708 * 15 14 13 31 31 H 1.08991 * 109.48637 * 44.03522 * 15 14 13 32 32 H 0.96707 * 114.00085 * 59.98801 * 18 16 15 33 33 H 1.09004 * 109.46387 * 127.05111 * 19 16 15 34 34 H 1.08999 * 109.45711 * 7.06945 * 19 16 15 35 35 H 1.09004 * 109.47013 * 284.01610 * 20 19 16 36 36 H 1.08991 * 109.47838 * 164.00579 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 1 2.9294 -3.5553 0.8413 12 6 3.0401 -3.6536 -1.3080 13 6 4.2792 -4.5381 -1.1570 14 6 4.9428 -4.2616 0.1934 15 6 4.8163 -5.4976 1.0864 16 6 3.3876 -5.5915 1.6260 17 1 3.0585 -4.6063 1.9564 18 8 3.3538 -6.4995 2.7289 19 6 2.4571 -6.0961 0.5214 20 6 1.4844 -4.9837 0.1252 21 1 -0.4850 0.8401 0.0004 22 1 0.6247 -2.5571 0.8897 23 1 0.6240 -2.5568 -0.8903 24 1 2.4160 -4.0372 -2.1151 25 1 3.3476 -2.6338 -1.5396 26 1 4.9830 -4.3174 -1.9595 27 1 3.9855 -5.5865 -1.2095 28 1 4.4517 -3.4150 0.6730 29 1 5.9970 -4.0308 0.0398 30 1 5.5148 -5.4173 1.9194 31 1 5.0448 -6.3909 0.5053 32 1 3.9218 -6.2420 3.4680 33 1 1.8958 -6.9571 0.8845 34 1 3.0485 -6.3877 -0.3465 35 1 0.7122 -4.8872 0.8885 36 1 1.0217 -5.2289 -0.8307 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238673182.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:38 Heat of formation + Delta-G solvation = -74.314768 kcal Electronic energy + Delta-G solvation = -15107.577372 eV Core-core repulsion = 12783.749165 eV Total energy + Delta-G solvation = -2323.828207 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.38021 -36.07192 -33.51225 -32.29013 -31.22315 -28.49081 -25.28808 -24.78540 -22.13488 -21.31372 -20.26285 -18.46764 -17.11272 -16.15495 -15.04329 -14.53026 -14.30723 -14.16001 -13.83208 -13.16411 -12.69843 -12.39872 -12.14600 -11.97245 -11.47521 -11.17928 -11.06769 -10.88972 -10.69157 -10.64461 -10.37544 -10.33600 -9.95805 -9.81001 -9.43807 -9.04989 -8.98845 -8.78462 -8.29680 -5.96466 -3.97750 3.32267 3.39038 3.41584 4.47767 4.49516 4.94592 5.04044 5.26743 5.38967 5.54973 5.61397 5.65123 5.69166 5.76537 5.79217 6.04860 6.20562 6.24178 6.31325 6.37725 6.44525 6.48310 6.56932 6.70648 6.77075 6.87177 7.15314 7.19378 7.30764 7.73129 7.86106 7.89737 8.05102 8.47813 9.09237 9.65523 11.14841 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.036859 B = 0.008524 C = 0.008147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.471177 B = 3284.121802 C = 3436.227655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.887 3.113 4 H -0.282 1.282 5 H -0.274 1.274 6 H -0.287 1.287 7 C -0.513 4.513 8 H 0.055 0.945 9 C 0.026 3.974 10 C -0.099 4.099 11 H 0.076 0.924 12 C -0.108 4.108 13 C -0.127 4.127 14 C -0.129 4.129 15 C -0.145 4.145 16 C 0.093 3.907 17 H 0.075 0.925 18 O -0.576 6.576 19 C -0.118 4.118 20 C -0.114 4.114 21 H 0.259 0.741 22 H 0.013 0.987 23 H 0.014 0.986 24 H 0.049 0.951 25 H 0.074 0.926 26 H 0.049 0.951 27 H 0.063 0.937 28 H 0.086 0.914 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.370 0.630 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.057 0.943 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.120 -9.898 1.103 12.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.715 3.285 4 H -0.208 1.208 5 H -0.199 1.199 6 H -0.213 1.213 7 C -0.551 4.551 8 H 0.074 0.926 9 C -0.011 4.011 10 C -0.117 4.117 11 H 0.094 0.906 12 C -0.146 4.146 13 C -0.164 4.164 14 C -0.167 4.167 15 C -0.183 4.183 16 C 0.035 3.965 17 H 0.092 0.908 18 O -0.381 6.381 19 C -0.155 4.155 20 C -0.152 4.152 21 H 0.069 0.931 22 H 0.032 0.968 23 H 0.032 0.968 24 H 0.067 0.933 25 H 0.093 0.907 26 H 0.068 0.932 27 H 0.081 0.919 28 H 0.104 0.896 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.217 0.783 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.542 -10.091 0.690 12.616 hybrid contribution 0.840 1.310 0.304 1.585 sum 8.382 -8.781 0.994 12.180 Atomic orbital electron populations 1.69969 1.06019 1.26407 1.51139 1.25026 0.94789 0.99105 0.95613 0.86675 0.79899 0.83885 0.78022 1.20791 1.19924 1.21332 1.21256 0.92910 0.91004 1.49966 0.92637 1.19158 0.93752 0.91219 0.97010 1.21706 0.98177 0.94479 0.97295 0.90595 1.21645 0.95062 1.00132 0.97740 1.21896 0.97870 1.00412 0.96240 1.21787 1.00167 0.98307 0.96391 1.22389 0.97091 0.99008 0.99779 1.22340 0.94418 0.92974 0.86772 0.90780 1.86527 1.70166 1.52631 1.28796 1.21850 0.97817 0.99064 0.96772 1.21738 0.97512 0.95060 1.00891 0.93128 0.96828 0.96761 0.93268 0.90716 0.93223 0.91873 0.89613 0.92801 0.92489 0.91825 0.78328 0.91844 0.90764 0.92396 0.92358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.51 -14.11 8.18 -34.44 -0.28 -14.39 16 8 H 0.06 1.48 7.19 -52.49 -0.38 1.10 16 9 C 0.03 0.65 4.42 -27.89 -0.12 0.53 16 10 C -0.10 -1.95 1.54 -90.61 -0.14 -2.09 16 11 H 0.08 1.49 2.83 -51.93 -0.15 1.34 16 12 C -0.11 -1.98 5.00 -26.73 -0.13 -2.11 16 13 C -0.13 -1.89 5.48 -26.74 -0.15 -2.04 16 14 C -0.13 -1.86 5.47 -26.73 -0.15 -2.01 16 15 C -0.14 -1.89 5.22 -26.72 -0.14 -2.03 16 16 C 0.09 1.37 3.02 -26.73 -0.08 1.29 16 17 H 0.07 1.22 5.47 -51.93 -0.28 0.94 16 18 O -0.58 -8.16 13.18 -35.23 -0.46 -8.63 16 19 C -0.12 -1.80 5.29 -26.74 -0.14 -1.94 16 20 C -0.11 -2.00 5.07 -26.73 -0.14 -2.14 16 21 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 22 H 0.01 0.37 8.06 -51.92 -0.42 -0.05 16 23 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.05 0.88 7.82 -51.93 -0.41 0.47 16 25 H 0.07 1.53 6.65 -51.93 -0.35 1.19 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.88 4.69 -51.92 -0.24 0.64 16 28 H 0.09 1.42 5.47 -51.93 -0.28 1.14 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.66 8.11 -51.92 -0.42 0.23 16 31 H 0.06 0.81 7.47 -51.93 -0.39 0.42 16 32 H 0.37 3.68 9.06 45.56 0.41 4.09 16 33 H 0.06 0.97 7.91 -51.93 -0.41 0.56 16 34 H 0.07 1.06 4.69 -51.93 -0.24 0.82 16 35 H 0.06 1.06 7.98 -51.93 -0.41 0.65 16 36 H 0.06 0.99 7.82 -51.93 -0.41 0.58 16 LS Contribution 265.43 15.07 4.00 4.00 Total: -1.00 -30.02 265.43 -7.09 -37.11 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -4.78 Total: 2.62 kcal Atomic # 6 Polarization: -23.89 SS G_CDS: -1.57 Total: -25.46 kcal Atomic # 7 Polarization: -26.92 SS G_CDS: 0.74 Total: -26.18 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: -0.46 Total: -8.63 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -30.02 -7.09 -37.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238673182.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.203 kcal (2) G-P(sol) polarization free energy of solvation -30.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds