Wall clock time and date at job start Mon Mar 30 2020 03:05:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31516 * 1
3 3 Si 1.86798 * 120.00321 * 2 1
4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1
5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1
6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1
7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3
8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1
9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1
10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2
11 11 H 1.09000 * 109.47151 * 54.99917 * 10 9 7
12 12 C 1.53015 * 109.46880 * 294.99939 * 10 9 7
13 13 C 1.52991 * 109.45972 * 164.04249 * 12 10 9
14 14 C 1.52987 * 109.51195 * 315.99238 * 13 12 10
15 15 C 1.53008 * 109.46882 * 112.93442 * 14 13 12
16 16 C 1.53005 * 109.43046 * 284.03809 * 15 14 13
17 17 H 1.09003 * 109.47177 * 315.96335 * 16 15 14
18 18 O 1.42897 * 109.46990 * 195.96771 * 16 15 14
19 19 C 1.52992 * 109.48327 * 75.96705 * 16 15 14
20 20 C 1.52992 * 109.50559 * 247.06412 * 19 16 15
21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3
22 22 H 1.09007 * 109.47443 * 300.00164 * 9 7 2
23 23 H 1.09003 * 109.47615 * 60.00205 * 9 7 2
24 24 H 1.08995 * 109.47438 * 284.04004 * 12 10 9
25 25 H 1.09002 * 109.46866 * 44.05105 * 12 10 9
26 26 H 1.08995 * 109.46852 * 195.97650 * 13 12 10
27 27 H 1.09010 * 109.45536 * 75.99464 * 13 12 10
28 28 H 1.08993 * 109.46846 * 352.93503 * 14 13 12
29 29 H 1.08998 * 109.47127 * 232.93363 * 14 13 12
30 30 H 1.09008 * 109.47573 * 164.05708 * 15 14 13
31 31 H 1.08991 * 109.48637 * 44.03522 * 15 14 13
32 32 H 0.96707 * 114.00085 * 59.98801 * 18 16 15
33 33 H 1.09004 * 109.46387 * 127.05111 * 19 16 15
34 34 H 1.08999 * 109.45711 * 7.06945 * 19 16 15
35 35 H 1.09004 * 109.47013 * 284.01610 * 20 19 16
36 36 H 1.08991 * 109.47838 * 164.00579 * 20 19 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4967 2.0464 1.4001
5 1 3.5468 1.4401 -0.7001
6 1 1.4467 2.6526 -0.7001
7 6 2.0046 -1.1941 -0.0005
8 1 3.0846 -1.1941 -0.0010
9 6 1.2511 -2.4992 -0.0005
10 6 2.2453 -3.6621 -0.0005
11 1 2.9294 -3.5553 0.8413
12 6 3.0401 -3.6536 -1.3080
13 6 4.2792 -4.5381 -1.1570
14 6 4.9428 -4.2616 0.1934
15 6 4.8163 -5.4976 1.0864
16 6 3.3876 -5.5915 1.6260
17 1 3.0585 -4.6063 1.9564
18 8 3.3538 -6.4995 2.7289
19 6 2.4571 -6.0961 0.5214
20 6 1.4844 -4.9837 0.1252
21 1 -0.4850 0.8401 0.0004
22 1 0.6247 -2.5571 0.8897
23 1 0.6240 -2.5568 -0.8903
24 1 2.4160 -4.0372 -2.1151
25 1 3.3476 -2.6338 -1.5396
26 1 4.9830 -4.3174 -1.9595
27 1 3.9855 -5.5865 -1.2095
28 1 4.4517 -3.4150 0.6730
29 1 5.9970 -4.0308 0.0398
30 1 5.5148 -5.4173 1.9194
31 1 5.0448 -6.3909 0.5053
32 1 3.9218 -6.2420 3.4680
33 1 1.8958 -6.9571 0.8845
34 1 3.0485 -6.3877 -0.3465
35 1 0.7122 -4.8872 0.8885
36 1 1.0217 -5.2289 -0.8307
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000238673182.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:05:38
Heat of formation + Delta-G solvation = -74.314768 kcal
Electronic energy + Delta-G solvation = -15107.577372 eV
Core-core repulsion = 12783.749165 eV
Total energy + Delta-G solvation = -2323.828207 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 212.152 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-39.38021 -36.07192 -33.51225 -32.29013 -31.22315 -28.49081 -25.28808 -24.78540
-22.13488 -21.31372 -20.26285 -18.46764 -17.11272 -16.15495 -15.04329 -14.53026
-14.30723 -14.16001 -13.83208 -13.16411 -12.69843 -12.39872 -12.14600 -11.97245
-11.47521 -11.17928 -11.06769 -10.88972 -10.69157 -10.64461 -10.37544 -10.33600
-9.95805 -9.81001 -9.43807 -9.04989 -8.98845 -8.78462 -8.29680 -5.96466
-3.97750 3.32267 3.39038 3.41584 4.47767 4.49516 4.94592 5.04044
5.26743 5.38967 5.54973 5.61397 5.65123 5.69166 5.76537 5.79217
6.04860 6.20562 6.24178 6.31325 6.37725 6.44525 6.48310 6.56932
6.70648 6.77075 6.87177 7.15314 7.19378 7.30764 7.73129 7.86106
7.89737 8.05102 8.47813 9.09237 9.65523 11.14841
Molecular weight = 212.15amu
Principal moments of inertia in cm(-1)
A = 0.036859 B = 0.008524 C = 0.008147
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 759.471177 B = 3284.121802 C = 3436.227655
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.896 5.896
2 C 0.055 3.945
3 Si 0.887 3.113
4 H -0.282 1.282
5 H -0.274 1.274
6 H -0.287 1.287
7 C -0.513 4.513
8 H 0.055 0.945
9 C 0.026 3.974
10 C -0.099 4.099
11 H 0.076 0.924
12 C -0.108 4.108
13 C -0.127 4.127
14 C -0.129 4.129
15 C -0.145 4.145
16 C 0.093 3.907
17 H 0.075 0.925
18 O -0.576 6.576
19 C -0.118 4.118
20 C -0.114 4.114
21 H 0.259 0.741
22 H 0.013 0.987
23 H 0.014 0.986
24 H 0.049 0.951
25 H 0.074 0.926
26 H 0.049 0.951
27 H 0.063 0.937
28 H 0.086 0.914
29 H 0.053 0.947
30 H 0.056 0.944
31 H 0.063 0.937
32 H 0.370 0.630
33 H 0.063 0.937
34 H 0.074 0.926
35 H 0.057 0.943
36 H 0.058 0.942
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.120 -9.898 1.103 12.850
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.535 5.535
2 C -0.145 4.145
3 Si 0.715 3.285
4 H -0.208 1.208
5 H -0.199 1.199
6 H -0.213 1.213
7 C -0.551 4.551
8 H 0.074 0.926
9 C -0.011 4.011
10 C -0.117 4.117
11 H 0.094 0.906
12 C -0.146 4.146
13 C -0.164 4.164
14 C -0.167 4.167
15 C -0.183 4.183
16 C 0.035 3.965
17 H 0.092 0.908
18 O -0.381 6.381
19 C -0.155 4.155
20 C -0.152 4.152
21 H 0.069 0.931
22 H 0.032 0.968
23 H 0.032 0.968
24 H 0.067 0.933
25 H 0.093 0.907
26 H 0.068 0.932
27 H 0.081 0.919
28 H 0.104 0.896
29 H 0.072 0.928
30 H 0.075 0.925
31 H 0.082 0.918
32 H 0.217 0.783
33 H 0.082 0.918
34 H 0.092 0.908
35 H 0.076 0.924
36 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges 7.542 -10.091 0.690 12.616
hybrid contribution 0.840 1.310 0.304 1.585
sum 8.382 -8.781 0.994 12.180
Atomic orbital electron populations
1.69969 1.06019 1.26407 1.51139 1.25026 0.94789 0.99105 0.95613
0.86675 0.79899 0.83885 0.78022 1.20791 1.19924 1.21332 1.21256
0.92910 0.91004 1.49966 0.92637 1.19158 0.93752 0.91219 0.97010
1.21706 0.98177 0.94479 0.97295 0.90595 1.21645 0.95062 1.00132
0.97740 1.21896 0.97870 1.00412 0.96240 1.21787 1.00167 0.98307
0.96391 1.22389 0.97091 0.99008 0.99779 1.22340 0.94418 0.92974
0.86772 0.90780 1.86527 1.70166 1.52631 1.28796 1.21850 0.97817
0.99064 0.96772 1.21738 0.97512 0.95060 1.00891 0.93128 0.96828
0.96761 0.93268 0.90716 0.93223 0.91873 0.89613 0.92801 0.92489
0.91825 0.78328 0.91844 0.90764 0.92396 0.92358
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16
2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16
3 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16
4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16
5 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16
6 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16
7 C -0.51 -14.11 8.18 -34.44 -0.28 -14.39 16
8 H 0.06 1.48 7.19 -52.49 -0.38 1.10 16
9 C 0.03 0.65 4.42 -27.89 -0.12 0.53 16
10 C -0.10 -1.95 1.54 -90.61 -0.14 -2.09 16
11 H 0.08 1.49 2.83 -51.93 -0.15 1.34 16
12 C -0.11 -1.98 5.00 -26.73 -0.13 -2.11 16
13 C -0.13 -1.89 5.48 -26.74 -0.15 -2.04 16
14 C -0.13 -1.86 5.47 -26.73 -0.15 -2.01 16
15 C -0.14 -1.89 5.22 -26.72 -0.14 -2.03 16
16 C 0.09 1.37 3.02 -26.73 -0.08 1.29 16
17 H 0.07 1.22 5.47 -51.93 -0.28 0.94 16
18 O -0.58 -8.16 13.18 -35.23 -0.46 -8.63 16
19 C -0.12 -1.80 5.29 -26.74 -0.14 -1.94 16
20 C -0.11 -2.00 5.07 -26.73 -0.14 -2.14 16
21 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16
22 H 0.01 0.37 8.06 -51.92 -0.42 -0.05 16
23 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16
24 H 0.05 0.88 7.82 -51.93 -0.41 0.47 16
25 H 0.07 1.53 6.65 -51.93 -0.35 1.19 16
26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16
27 H 0.06 0.88 4.69 -51.92 -0.24 0.64 16
28 H 0.09 1.42 5.47 -51.93 -0.28 1.14 16
29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16
30 H 0.06 0.66 8.11 -51.92 -0.42 0.23 16
31 H 0.06 0.81 7.47 -51.93 -0.39 0.42 16
32 H 0.37 3.68 9.06 45.56 0.41 4.09 16
33 H 0.06 0.97 7.91 -51.93 -0.41 0.56 16
34 H 0.07 1.06 4.69 -51.93 -0.24 0.82 16
35 H 0.06 1.06 7.98 -51.93 -0.41 0.65 16
36 H 0.06 0.99 7.82 -51.93 -0.41 0.58 16
LS Contribution 265.43 15.07 4.00 4.00
Total: -1.00 -30.02 265.43 -7.09 -37.11
By element:
Atomic # 1 Polarization: 7.40 SS G_CDS: -4.78 Total: 2.62 kcal
Atomic # 6 Polarization: -23.89 SS G_CDS: -1.57 Total: -25.46 kcal
Atomic # 7 Polarization: -26.92 SS G_CDS: 0.74 Total: -26.18 kcal
Atomic # 8 Polarization: -8.16 SS G_CDS: -0.46 Total: -8.63 kcal
Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal
Total LS contribution 4.00 Total: 4.00 kcal
Total: -30.02 -7.09 -37.11 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000238673182.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -37.203 kcal
(2) G-P(sol) polarization free energy of solvation -30.018 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.220 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.095 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.112 kcal
(6) G-S(sol) free energy of system = (1) + (5) -74.315 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds