Wall clock time and date at job start Mon Mar 30 2020 02:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.48559 * 110.99889 * 2 1 4 4 C 1.54380 * 104.59305 * 200.95588 * 3 2 1 5 5 C 1.54258 * 105.05896 * 23.85818 * 4 3 2 6 6 H 1.09003 * 110.32127 * 240.99868 * 5 4 3 7 7 N 1.46496 * 110.32742 * 118.89615 * 5 4 3 8 8 C 1.34777 * 120.00258 * 155.00088 * 7 5 4 9 9 O 1.21279 * 120.00166 * 359.97438 * 8 7 5 10 10 C 1.50706 * 119.99762 * 179.97438 * 8 7 5 11 11 C 1.50699 * 109.46817 * 179.97438 * 10 8 7 12 12 H 1.08003 * 119.99962 * 359.97438 * 11 10 8 13 13 C 1.37874 * 120.00270 * 180.02562 * 11 10 8 14 14 N 1.31522 * 119.99835 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00390 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.46950 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47074 * 119.99834 * 15 13 11 18 18 H 1.48505 * 109.46997 * 239.99828 * 15 13 11 19 19 C 1.48554 * 110.99980 * 244.57988 * 2 1 3 20 20 H 1.09007 * 109.46937 * 60.12510 * 1 2 3 21 21 H 1.08999 * 109.47144 * 180.12355 * 1 2 3 22 22 H 1.08998 * 109.46868 * 300.13007 * 1 2 3 23 23 H 1.09000 * 110.41217 * 82.18340 * 3 2 1 24 24 H 1.08993 * 110.51614 * 319.78953 * 3 2 1 25 25 H 1.09000 * 110.33027 * 264.95883 * 4 3 2 26 26 H 1.09003 * 110.40713 * 142.79171 * 4 3 2 27 27 H 0.96999 * 119.99694 * 334.99478 * 7 5 4 28 28 H 1.09000 * 109.47318 * 299.99141 * 10 8 7 29 29 H 1.09000 * 109.47161 * 59.99772 * 10 8 7 30 30 H 0.96992 * 120.00038 * 179.97438 * 14 13 11 31 31 H 1.09004 * 110.41178 * 40.26401 * 19 2 1 32 32 H 1.08997 * 110.41667 * 277.81901 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4433 1.2501 -0.5343 5 6 3.4433 -0.0539 -1.3585 6 1 4.1496 -0.7686 -0.9361 7 7 3.7799 0.2275 -2.7562 8 6 4.3229 -0.7365 -3.5258 9 8 4.5333 -1.8369 -3.0611 10 6 4.6686 -0.4472 -4.9638 11 6 5.2572 -1.6815 -5.5971 12 1 5.3701 -2.5850 -5.0162 13 6 5.6527 -1.6572 -6.9177 14 7 5.5157 -0.5568 -7.6249 15 14 6.3816 -3.1874 -7.7029 16 1 6.4271 -4.2835 -6.7020 17 1 5.5399 -3.6020 -8.8538 18 1 7.7579 -2.8929 -8.1767 19 6 2.0014 -0.5953 -1.2526 20 1 -0.3633 0.5119 -0.8912 21 1 -0.3633 -1.0276 0.0022 22 1 -0.3633 0.5158 0.8888 23 1 2.0079 1.7916 1.0121 24 1 1.4105 2.0229 -0.6590 25 1 4.1484 1.1748 0.2935 26 1 3.6955 2.0993 -1.1695 27 1 3.6119 1.1076 -3.1278 28 1 3.7669 -0.1567 -5.5030 29 1 5.3950 0.3644 -5.0067 30 1 5.7942 -0.5395 -8.5539 31 1 1.4099 -0.2712 -2.1089 32 1 2.0079 -1.6831 -1.1838 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258677187.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:18 Heat of formation + Delta-G solvation = -38.717172 kcal Electronic energy + Delta-G solvation = -14036.297791 eV Core-core repulsion = 11610.472868 eV Total energy + Delta-G solvation = -2425.824923 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.50675 -37.85029 -33.95470 -32.91357 -30.99742 -29.13458 -27.92536 -25.47800 -23.48550 -21.23731 -20.61295 -19.73170 -16.50036 -16.29120 -15.88596 -15.31939 -14.67682 -14.43001 -14.19362 -13.84866 -13.44689 -12.85513 -12.49833 -12.09904 -11.88763 -11.56924 -11.46748 -11.36832 -11.12871 -10.76762 -10.71630 -10.58408 -9.94308 -9.24707 -8.72961 -8.58246 -8.47491 -8.39870 -6.05439 -4.04739 3.34038 3.41009 3.49568 3.67920 3.73548 4.21694 4.50543 4.61647 4.72215 5.01975 5.22048 5.32636 5.33054 5.40041 5.50039 5.61139 5.72338 5.77919 5.91970 6.05746 6.12522 6.42758 6.64605 6.89613 7.10147 7.21230 7.33030 7.96730 8.06040 8.44533 9.06856 9.24080 9.60589 11.07085 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.064439 B = 0.005943 C = 0.005807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.417991 B = 4710.621516 C = 4820.442850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.517 5.517 3 C 0.031 3.969 4 C -0.131 4.131 5 C 0.141 3.859 6 H 0.096 0.904 7 N -0.744 5.744 8 C 0.514 3.486 9 O -0.543 6.543 10 C 0.004 3.996 11 C -0.506 4.506 12 H 0.076 0.924 13 C 0.054 3.946 14 N -0.902 5.902 15 Si 0.901 3.099 16 H -0.270 1.270 17 H -0.284 1.284 18 H -0.284 1.284 19 C 0.022 3.978 20 H 0.028 0.972 21 H 0.069 0.931 22 H 0.067 0.933 23 H 0.080 0.920 24 H 0.044 0.956 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.395 0.605 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.261 0.739 31 H 0.050 0.950 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.840 6.164 12.510 15.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.241 5.241 3 C -0.097 4.097 4 C -0.170 4.170 5 C 0.034 3.966 6 H 0.114 0.886 7 N -0.398 5.398 8 C 0.304 3.696 9 O -0.419 6.419 10 C -0.035 4.035 11 C -0.545 4.545 12 H 0.094 0.906 13 C -0.147 4.147 14 N -0.542 5.542 15 Si 0.728 3.272 16 H -0.195 1.195 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.108 4.108 20 H 0.046 0.954 21 H 0.088 0.912 22 H 0.086 0.914 23 H 0.099 0.901 24 H 0.062 0.938 25 H 0.098 0.902 26 H 0.095 0.905 27 H 0.229 0.771 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.487 5.097 13.142 15.961 hybrid contribution -0.123 0.240 -1.430 1.455 sum -7.610 5.338 11.712 14.952 Atomic orbital electron populations 1.22498 0.88103 1.02280 1.00578 1.65368 1.08145 1.15071 1.35485 1.23121 0.95152 0.90390 1.01011 1.22617 0.96746 0.97603 1.00020 1.21480 0.95553 0.96615 0.82910 0.88610 1.46478 1.66608 1.15847 1.10890 1.22043 0.74187 0.83465 0.89856 1.90537 1.52882 1.23489 1.74986 1.19250 0.98644 0.99874 0.85745 1.21218 1.39911 0.97616 0.95751 0.90611 1.25016 0.95955 0.96533 0.97176 1.69971 1.48410 1.26875 1.08919 0.86379 0.78587 0.83124 0.79073 1.19455 1.21025 1.21011 1.23621 0.95666 1.01003 0.90468 0.95354 0.91211 0.91434 0.90114 0.93773 0.90180 0.90506 0.77136 0.93543 0.93470 0.92986 0.93216 0.89564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.53 60.07 0.57 0.72 16 2 N -0.52 -6.41 5.66 -238.23 -1.35 -7.76 16 3 C 0.03 0.33 6.49 -2.18 -0.01 0.32 16 4 C -0.13 -1.49 6.76 -25.35 -0.17 -1.66 16 5 C 0.14 2.13 3.41 -66.55 -0.23 1.90 16 6 H 0.10 1.66 7.56 -51.93 -0.39 1.27 16 7 N -0.74 -12.71 5.06 -52.47 -0.27 -12.98 16 8 C 0.51 11.70 7.82 -10.98 -0.09 11.61 16 9 O -0.54 -14.20 15.11 5.56 0.08 -14.12 16 10 C 0.00 0.11 5.46 -29.03 -0.16 -0.05 16 11 C -0.51 -14.79 8.92 -34.44 -0.31 -15.10 16 12 H 0.08 2.32 6.75 -52.48 -0.35 1.96 16 13 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 14 N -0.90 -26.56 13.29 55.43 0.74 -25.82 16 15 Si 0.90 22.24 29.54 -169.99 -5.02 17.22 16 16 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 19 C 0.02 0.31 6.21 -2.18 -0.01 0.30 16 20 H 0.03 0.28 7.97 -51.92 -0.41 -0.13 16 21 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.04 0.44 7.97 -51.93 -0.41 0.03 16 25 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.08 0.79 7.67 -51.93 -0.40 0.39 16 27 H 0.39 5.71 8.36 -40.82 -0.34 5.37 16 28 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 31 H 0.05 0.74 7.82 -51.93 -0.41 0.33 16 32 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 269.44 15.07 4.06 4.06 Total: -1.00 -32.29 269.44 -7.07 -39.36 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -4.81 Total: 0.56 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -0.50 Total: -0.51 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: -0.88 Total: -46.56 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: 0.08 Total: -14.12 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -32.29 -7.07 -39.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258677187.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.639 kcal (2) G-P(sol) polarization free energy of solvation -32.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds