Wall clock time and date at job start Mon Mar 30 2020 02:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.48559 * 110.99889 * 2 1 4 4 C 1.54380 * 104.59305 * 200.95588 * 3 2 1 5 5 C 1.54258 * 105.05896 * 23.85818 * 4 3 2 6 6 H 1.09003 * 110.32127 * 240.99868 * 5 4 3 7 7 N 1.46496 * 110.32742 * 118.89615 * 5 4 3 8 8 C 1.34777 * 120.00258 * 155.00088 * 7 5 4 9 9 O 1.21279 * 120.00166 * 359.97438 * 8 7 5 10 10 C 1.50706 * 119.99762 * 179.97438 * 8 7 5 11 11 C 1.50699 * 109.46817 * 179.97438 * 10 8 7 12 12 H 1.08003 * 119.99962 * 359.97438 * 11 10 8 13 13 C 1.37874 * 120.00270 * 180.02562 * 11 10 8 14 14 N 1.31522 * 119.99835 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00390 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.46950 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47074 * 119.99834 * 15 13 11 18 18 H 1.48505 * 109.46997 * 239.99828 * 15 13 11 19 19 C 1.48554 * 110.99980 * 244.57988 * 2 1 3 20 20 H 1.09007 * 109.46937 * 60.12510 * 1 2 3 21 21 H 1.08999 * 109.47144 * 180.12355 * 1 2 3 22 22 H 1.08998 * 109.46868 * 300.13007 * 1 2 3 23 23 H 1.09000 * 110.41217 * 82.18340 * 3 2 1 24 24 H 1.08993 * 110.51614 * 319.78953 * 3 2 1 25 25 H 1.09000 * 110.33027 * 264.95883 * 4 3 2 26 26 H 1.09003 * 110.40713 * 142.79171 * 4 3 2 27 27 H 0.96999 * 119.99694 * 334.99478 * 7 5 4 28 28 H 1.09000 * 109.47318 * 299.99141 * 10 8 7 29 29 H 1.09000 * 109.47161 * 59.99772 * 10 8 7 30 30 H 0.96992 * 120.00038 * 179.97438 * 14 13 11 31 31 H 1.09004 * 110.41178 * 40.26401 * 19 2 1 32 32 H 1.08997 * 110.41667 * 277.81901 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4433 1.2501 -0.5343 5 6 3.4433 -0.0539 -1.3585 6 1 4.1496 -0.7686 -0.9361 7 7 3.7799 0.2275 -2.7562 8 6 4.3229 -0.7365 -3.5258 9 8 4.5333 -1.8369 -3.0611 10 6 4.6686 -0.4472 -4.9638 11 6 5.2572 -1.6815 -5.5971 12 1 5.3701 -2.5850 -5.0162 13 6 5.6527 -1.6572 -6.9177 14 7 5.5157 -0.5568 -7.6249 15 14 6.3816 -3.1874 -7.7029 16 1 6.4271 -4.2835 -6.7020 17 1 5.5399 -3.6020 -8.8538 18 1 7.7579 -2.8929 -8.1767 19 6 2.0014 -0.5953 -1.2526 20 1 -0.3633 0.5119 -0.8912 21 1 -0.3633 -1.0276 0.0022 22 1 -0.3633 0.5158 0.8888 23 1 2.0079 1.7916 1.0121 24 1 1.4105 2.0229 -0.6590 25 1 4.1484 1.1748 0.2935 26 1 3.6955 2.0993 -1.1695 27 1 3.6119 1.1076 -3.1278 28 1 3.7669 -0.1567 -5.5030 29 1 5.3950 0.3644 -5.0067 30 1 5.7942 -0.5395 -8.5539 31 1 1.4099 -0.2712 -2.1089 32 1 2.0079 -1.6831 -1.1838 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258677187.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:17 Heat of formation + Delta-G solvation = -63.498876 kcal Electronic energy + Delta-G solvation = -14037.372406 eV Core-core repulsion = 11610.472868 eV Total energy + Delta-G solvation = -2426.899538 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.90751 -39.29904 -35.40069 -35.08967 -32.25342 -30.87453 -29.25148 -26.60686 -25.39408 -22.26029 -21.81555 -21.40574 -18.55645 -17.82282 -17.33610 -16.66731 -16.32274 -16.08001 -15.41830 -15.22487 -14.60438 -14.36294 -14.16881 -13.69548 -13.33459 -12.86199 -12.79986 -12.56553 -12.47534 -12.36798 -12.28776 -12.05001 -11.81080 -11.43803 -10.63492 -10.53064 -10.03983 -9.53132 -8.26127 -6.33174 1.39326 1.40134 1.55176 1.87026 2.28594 2.47414 3.09304 3.16806 3.60141 3.66610 4.05964 4.27052 4.36702 4.38380 4.53069 4.56175 4.69421 4.79885 4.96093 4.99311 5.01953 5.09350 5.14311 5.25955 5.50049 5.71698 5.84985 5.99723 6.05448 6.70536 6.83830 7.33380 7.51619 8.86257 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.064439 B = 0.005943 C = 0.005807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.417991 B = 4710.621516 C = 4820.442850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.527 5.527 3 C 0.034 3.966 4 C -0.122 4.122 5 C 0.134 3.866 6 H 0.070 0.930 7 N -0.720 5.720 8 C 0.519 3.481 9 O -0.584 6.584 10 C 0.007 3.993 11 C -0.536 4.536 12 H 0.054 0.946 13 C 0.010 3.990 14 N -0.925 5.925 15 Si 0.964 3.036 16 H -0.276 1.276 17 H -0.272 1.272 18 H -0.272 1.272 19 C 0.027 3.973 20 H 0.031 0.969 21 H 0.066 0.934 22 H 0.088 0.912 23 H 0.102 0.898 24 H 0.055 0.945 25 H 0.090 0.910 26 H 0.094 0.906 27 H 0.411 0.589 28 H 0.042 0.958 29 H 0.044 0.956 30 H 0.267 0.733 31 H 0.046 0.954 32 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.315 7.220 13.109 17.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.251 5.251 3 C -0.094 4.094 4 C -0.161 4.161 5 C 0.029 3.971 6 H 0.089 0.911 7 N -0.373 5.373 8 C 0.308 3.692 9 O -0.463 6.463 10 C -0.032 4.032 11 C -0.575 4.575 12 H 0.072 0.928 13 C -0.188 4.188 14 N -0.565 5.565 15 Si 0.789 3.211 16 H -0.201 1.201 17 H -0.197 1.197 18 H -0.197 1.197 19 C -0.103 4.103 20 H 0.050 0.950 21 H 0.085 0.915 22 H 0.107 0.893 23 H 0.121 0.879 24 H 0.074 0.926 25 H 0.109 0.891 26 H 0.112 0.888 27 H 0.248 0.752 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.990 6.216 13.759 17.082 hybrid contribution -0.016 -0.034 -1.570 1.570 sum -8.006 6.181 12.189 15.839 Atomic orbital electron populations 1.22568 0.86669 1.02590 1.01726 1.65365 1.09597 1.16421 1.33721 1.23214 0.94213 0.89401 1.02542 1.22610 0.97992 0.95613 0.99840 1.21634 0.95324 0.98618 0.81544 0.91149 1.46154 1.64456 1.15273 1.11466 1.21498 0.74607 0.83725 0.89350 1.90517 1.55008 1.25285 1.75494 1.19089 0.98069 0.98406 0.87635 1.21407 1.41306 0.98239 0.96518 0.92791 1.25786 0.96008 0.99608 0.97447 1.70034 1.48616 1.28407 1.09422 0.85408 0.78423 0.79194 0.78084 1.20055 1.19723 1.19678 1.23419 0.95285 0.99869 0.91685 0.95048 0.91486 0.89314 0.87945 0.92638 0.89101 0.88803 0.75236 0.93998 0.93834 0.92381 0.93584 0.91839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.24 9.53 127.69 1.22 1.45 16 2 N -0.53 -12.07 5.66 -907.63 -5.14 -17.20 16 3 C 0.03 0.60 6.49 86.45 0.56 1.16 16 4 C -0.12 -2.45 6.76 31.49 0.21 -2.24 16 5 C 0.13 3.98 3.41 45.89 0.16 4.14 16 6 H 0.07 2.48 7.56 -2.39 -0.02 2.46 16 7 N -0.72 -24.24 5.06 -438.30 -2.22 -26.46 16 8 C 0.52 24.02 7.82 87.66 0.69 24.71 16 9 O -0.58 -31.51 15.11 -3.03 -0.05 -31.56 16 10 C 0.01 0.39 5.46 29.10 0.16 0.55 16 11 C -0.54 -31.99 8.92 25.60 0.23 -31.77 16 12 H 0.05 3.40 6.75 -2.91 -0.02 3.38 16 13 C 0.01 0.58 5.46 84.65 0.46 1.04 16 14 N -0.92 -54.29 13.29 21.45 0.28 -54.00 16 15 Si 0.96 45.67 29.54 68.60 2.03 47.70 16 16 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 17 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 18 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 19 C 0.03 0.77 6.21 86.45 0.54 1.31 16 20 H 0.03 0.56 7.97 -2.38 -0.02 0.54 16 21 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 22 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 23 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.06 0.89 7.97 -2.39 -0.02 0.87 16 25 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.09 1.59 7.67 -2.39 -0.02 1.58 16 27 H 0.41 11.26 8.36 -92.71 -0.77 10.49 16 28 H 0.04 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.04 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 31 H 0.05 1.34 7.82 -2.38 -0.02 1.32 16 32 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -69.73 269.44 -0.54 -70.27 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: 0.33 Total: 10.90 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: 4.22 Total: 0.35 kcal Atomic # 7 Polarization: -90.59 SS G_CDS: -7.07 Total: -97.66 kcal Atomic # 8 Polarization: -31.51 SS G_CDS: -0.05 Total: -31.56 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -69.73 -0.54 -70.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258677187.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.773 kcal (2) G-P(sol) polarization free energy of solvation -69.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds