Wall clock time and date at job start Mon Mar 30 2020 02:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34776 * 119.99930 * 2 1 4 4 O 1.21686 * 119.99910 * 180.02562 * 3 2 1 5 5 C 1.46379 * 120.00074 * 359.97438 * 3 2 1 6 6 H 1.07997 * 119.99891 * 0.02562 * 5 3 2 7 7 C 1.40044 * 119.99862 * 179.97438 * 5 3 2 8 8 N 1.30668 * 120.00572 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 119.99826 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.46836 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47151 * 119.99833 * 9 7 5 12 12 H 1.48494 * 109.47137 * 239.99945 * 9 7 5 13 13 C 1.46498 * 120.00381 * 180.02562 * 2 1 3 14 14 H 1.08993 * 110.35990 * 180.68789 * 13 2 1 15 15 C 1.54605 * 110.30271 * 302.82679 * 13 2 1 16 16 C 1.54943 * 102.91757 * 140.87271 * 15 13 2 17 17 N 1.48530 * 103.23039 * 322.58364 * 16 15 13 18 18 C 1.46901 * 111.00024 * 159.71921 * 17 16 15 19 19 C 1.47907 * 105.81562 * 39.20787 * 17 16 15 20 20 H 1.09002 * 109.47105 * 269.99566 * 1 2 3 21 21 H 1.08999 * 109.47762 * 30.00161 * 1 2 3 22 22 H 1.09003 * 109.47377 * 149.99693 * 1 2 3 23 23 H 0.96995 * 120.00335 * 180.02562 * 8 7 5 24 24 H 1.08996 * 110.72454 * 259.22756 * 15 13 2 25 25 H 1.08998 * 110.72592 * 22.33760 * 15 13 2 26 26 H 1.09002 * 110.66648 * 204.14492 * 16 15 13 27 27 H 1.09006 * 110.66501 * 81.02084 * 16 15 13 28 28 H 1.09002 * 109.47401 * 302.60551 * 18 17 16 29 29 H 1.09001 * 109.46874 * 182.60564 * 18 17 16 30 30 H 1.09004 * 109.46970 * 62.60697 * 18 17 16 31 31 H 1.09003 * 109.91802 * 94.02888 * 19 17 16 32 32 H 1.09002 * 109.91260 * 215.31324 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3557 1.1672 -0.0005 5 6 1.4069 2.4349 -0.0006 6 1 0.3269 2.4349 -0.0006 7 6 2.1072 3.6477 0.0000 8 7 3.4138 3.6478 0.0005 9 14 1.1731 5.2655 0.0000 10 1 -0.2869 4.9940 0.0000 11 1 1.5314 6.0439 1.2129 12 1 1.5323 6.0444 -1.2122 13 6 2.1975 -1.2687 -0.0006 14 1 3.2720 -1.0861 0.0118 15 6 1.7850 -2.1268 1.2175 16 6 1.7394 -3.5605 0.6316 17 7 1.1897 -3.3529 -0.7325 18 6 1.5087 -4.4892 -1.6072 19 6 1.8121 -2.1079 -1.2328 20 1 -0.3633 -0.0001 1.0277 21 1 -0.3634 0.8899 -0.5138 22 1 -0.3634 -0.8900 -0.5139 23 1 3.8988 4.4878 0.0012 24 1 2.5313 -2.0572 2.0088 25 1 0.8044 -1.8266 1.5865 26 1 1.0778 -4.1958 1.2205 27 1 2.7410 -3.9878 0.5819 28 1 2.5892 -4.6284 -1.6427 29 1 1.1347 -4.2907 -2.6116 30 1 1.0387 -5.3917 -1.2163 31 1 2.7033 -2.3457 -1.8137 32 1 1.1000 -1.5583 -1.8485 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258725170.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:11 Heat of formation + Delta-G solvation = -49.546041 kcal Electronic energy + Delta-G solvation = -14572.522328 eV Core-core repulsion = 12146.227830 eV Total energy + Delta-G solvation = -2426.294498 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.60732 -38.73148 -35.60378 -34.60381 -32.28407 -29.84599 -28.16865 -27.34985 -25.96649 -22.62171 -22.09432 -20.38533 -18.55680 -17.86268 -17.01262 -16.65586 -15.93197 -15.58357 -15.36564 -15.01722 -14.28459 -14.01264 -13.45315 -13.37887 -13.13903 -13.01937 -12.79524 -12.69912 -12.54527 -12.34606 -12.19532 -12.14589 -11.95733 -11.63285 -10.94801 -9.79319 -9.44626 -9.06743 -8.28999 -6.84433 1.40043 1.40317 1.58409 2.24048 2.44944 2.81154 3.08706 3.53978 3.75144 3.88383 4.14434 4.28521 4.36739 4.54957 4.57231 4.62621 4.70596 4.82931 4.88243 4.94005 5.01072 5.05373 5.17361 5.20651 5.38003 5.71387 5.86595 6.06940 6.15068 6.44926 6.87810 7.42114 8.46761 8.67427 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.062504 B = 0.007564 C = 0.007328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.862844 B = 3700.671572 C = 3820.079460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.639 5.639 3 C 0.537 3.463 4 O -0.635 6.635 5 C -0.567 4.567 6 H 0.093 0.907 7 C 0.027 3.973 8 N -0.823 5.823 9 Si 0.997 3.003 10 H -0.245 1.245 11 H -0.269 1.269 12 H -0.269 1.269 13 C 0.131 3.869 14 H 0.056 0.944 15 C -0.128 4.128 16 C 0.045 3.955 17 N -0.525 5.525 18 C 0.015 3.985 19 C 0.038 3.962 20 H 0.042 0.958 21 H 0.063 0.937 22 H 0.076 0.924 23 H 0.274 0.726 24 H 0.066 0.934 25 H 0.079 0.921 26 H 0.105 0.895 27 H 0.050 0.950 28 H 0.028 0.972 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.041 0.959 32 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.485 -11.119 -0.470 13.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.374 5.374 3 C 0.343 3.657 4 O -0.522 6.522 5 C -0.603 4.603 6 H 0.111 0.889 7 C -0.188 4.188 8 N -0.453 5.453 9 Si 0.816 3.184 10 H -0.168 1.168 11 H -0.194 1.194 12 H -0.194 1.194 13 C 0.025 3.975 14 H 0.074 0.926 15 C -0.167 4.167 16 C -0.083 4.083 17 N -0.249 5.249 18 C -0.133 4.133 19 C -0.092 4.092 20 H 0.060 0.940 21 H 0.081 0.919 22 H 0.094 0.906 23 H 0.083 0.917 24 H 0.085 0.915 25 H 0.098 0.902 26 H 0.124 0.876 27 H 0.069 0.931 28 H 0.046 0.954 29 H 0.090 0.910 30 H 0.107 0.893 31 H 0.059 0.941 32 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.260 -11.019 -0.479 13.205 hybrid contribution 1.064 0.737 -0.095 1.298 sum -6.196 -10.282 -0.574 12.019 Atomic orbital electron populations 1.21460 0.79549 1.02236 1.00631 1.47796 1.06776 1.04349 1.78485 1.18723 0.86635 0.84351 0.75983 1.90528 1.16360 1.87554 1.57808 1.21571 0.94911 0.89747 1.54070 0.88857 1.27027 0.95497 1.05048 0.91189 1.70205 1.09622 1.28823 1.36674 0.84986 0.79501 0.75412 0.78492 1.16757 1.19405 1.19386 1.21575 0.96198 0.84523 0.95212 0.92590 1.22822 1.02244 0.94796 0.96811 1.23226 0.99081 0.95986 0.90002 1.64772 1.54460 1.02563 1.03140 1.22591 0.99164 0.93817 0.97715 1.23099 0.97633 0.91798 0.96637 0.93985 0.91863 0.90588 0.91652 0.91549 0.90240 0.87639 0.93131 0.95374 0.91050 0.89311 0.94061 0.90705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.91 8.79 127.77 1.12 5.03 16 2 N -0.64 -30.01 2.78 -822.78 -2.29 -32.30 16 3 C 0.54 31.98 7.61 86.36 0.66 32.64 16 4 O -0.63 -43.61 14.38 -4.30 -0.06 -43.68 16 5 C -0.57 -32.48 8.74 24.83 0.22 -32.27 16 6 H 0.09 4.79 6.00 -2.91 -0.02 4.77 16 7 C 0.03 1.53 5.50 85.30 0.47 2.00 16 8 N -0.82 -51.19 11.83 21.83 0.26 -50.93 16 9 Si 1.00 41.27 29.56 68.60 2.03 43.30 16 10 H -0.24 -9.29 7.11 99.48 0.71 -8.59 16 11 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 12 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 13 C 0.13 5.35 3.39 45.87 0.16 5.51 16 14 H 0.06 2.73 6.97 -2.39 -0.02 2.71 16 15 C -0.13 -4.12 6.65 31.80 0.21 -3.91 16 16 C 0.04 1.12 6.56 86.65 0.57 1.69 16 17 N -0.52 -14.21 5.55 -909.12 -5.05 -19.25 16 18 C 0.02 0.32 9.40 127.69 1.20 1.52 16 19 C 0.04 1.28 5.85 86.44 0.51 1.78 16 20 H 0.04 1.47 7.88 -2.39 -0.02 1.45 16 21 H 0.06 2.44 6.09 -2.39 -0.01 2.43 16 22 H 0.08 2.46 6.87 -2.39 -0.02 2.44 16 23 H 0.27 15.35 8.29 -92.71 -0.77 14.58 16 24 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 25 H 0.08 2.54 6.91 -2.39 -0.02 2.52 16 26 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.05 1.20 7.96 -2.38 -0.02 1.18 16 28 H 0.03 0.58 8.00 -2.39 -0.02 0.56 16 29 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 31 H 0.04 1.39 7.73 -2.39 -0.02 1.37 16 32 H 0.07 2.67 7.01 -2.39 -0.02 2.65 16 Total: -1.00 -74.87 260.18 1.10 -73.77 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: 1.10 Total: 15.11 kcal Atomic # 6 Polarization: 8.88 SS G_CDS: 5.11 Total: 13.99 kcal Atomic # 7 Polarization: -95.41 SS G_CDS: -7.08 Total: -102.48 kcal Atomic # 8 Polarization: -43.61 SS G_CDS: -0.06 Total: -43.68 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal Total: -74.87 1.10 -73.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258725170.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.221 kcal (2) G-P(sol) polarization free energy of solvation -74.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds