Wall clock time and date at job start Mon Mar 30 2020 02:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.47622 * 2 1 4 4 C 1.46384 * 119.32786 * 89.99316 * 3 2 1 5 5 C 1.53243 * 109.20453 * 150.91272 * 4 3 2 6 6 C 1.53360 * 108.49891 * 55.44381 * 5 4 3 7 7 N 1.46381 * 109.19727 * 304.58249 * 6 5 4 8 8 C 1.46502 * 119.32926 * 209.07243 * 7 6 5 9 9 C 1.50705 * 109.46763 * 269.97496 * 8 7 6 10 10 H 1.08002 * 120.00042 * 0.02562 * 9 8 7 11 11 C 1.37881 * 119.99743 * 179.97438 * 9 8 7 12 12 N 1.31512 * 120.00121 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99956 * 180.02562 * 11 9 8 14 14 H 1.48507 * 109.47044 * 0.02562 * 13 11 9 15 15 H 1.48496 * 109.47137 * 120.00366 * 13 11 9 16 16 H 1.48500 * 109.47282 * 240.00619 * 13 11 9 17 17 C 1.34131 * 119.33017 * 270.02073 * 3 2 1 18 18 O 1.21591 * 118.69702 * 0.56764 * 17 3 2 19 19 H 1.08998 * 109.47138 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.47295 * 300.00404 * 1 2 3 21 21 H 1.09006 * 109.46500 * 60.00099 * 1 2 3 22 22 H 1.09000 * 109.47295 * 239.99596 * 2 1 3 23 23 H 1.09011 * 109.47182 * 119.99743 * 2 1 3 24 24 H 1.09002 * 109.52654 * 270.84843 * 4 3 2 25 25 H 1.08995 * 109.52610 * 30.97910 * 4 3 2 26 26 H 1.08994 * 109.62104 * 175.23808 * 5 4 3 27 27 H 1.09000 * 109.62118 * 295.79300 * 5 4 3 28 28 H 1.09007 * 109.51198 * 184.66203 * 6 5 4 29 29 H 1.09001 * 109.54954 * 64.52552 * 6 5 4 30 30 H 1.08998 * 109.47514 * 29.97755 * 8 7 6 31 31 H 1.08996 * 109.47003 * 149.98142 * 8 7 6 32 32 H 0.96997 * 120.00049 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.2574 2.0572 1.2762 5 6 3.3706 3.0949 1.0963 6 6 2.9727 4.0431 -0.0414 7 7 2.6945 3.2594 -1.2460 8 6 2.9207 3.8618 -2.5622 9 6 1.6627 4.5532 -3.0210 10 1 0.7829 4.5451 -2.3947 11 6 1.6353 5.1971 -4.2400 12 7 2.7069 5.2074 -5.0024 13 14 0.0763 6.0547 -4.8085 14 1 -0.9793 5.8987 -3.7756 15 1 0.3537 7.4984 -5.0179 16 1 -0.3850 5.4492 -6.0836 17 6 2.2371 2.0008 -1.1694 18 8 2.0122 1.3975 -2.2008 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3634 0.5139 0.8899 21 1 -0.3632 0.5139 -0.8901 22 1 1.8934 -0.5139 -0.8899 23 1 1.8934 -0.5138 0.8901 24 1 1.3440 2.5555 1.6012 25 1 2.5593 1.3253 2.0253 26 1 3.4962 3.6606 2.0195 27 1 4.3033 2.5909 0.8429 28 1 3.7895 4.7375 -0.2391 29 1 2.0811 4.6013 0.2440 30 1 3.7307 4.5881 -2.4950 31 1 3.1888 3.0836 -3.2767 32 1 2.6875 5.6600 -5.8601 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259611143.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:11 Heat of formation + Delta-G solvation = -26.850079 kcal Electronic energy + Delta-G solvation = -14716.274115 eV Core-core repulsion = 12290.963789 eV Total energy + Delta-G solvation = -2425.310327 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.94898 -35.69349 -35.48394 -32.79223 -31.27476 -29.54364 -27.35233 -25.21986 -23.63324 -21.99527 -21.67081 -17.78507 -16.75193 -16.39940 -16.22234 -15.23486 -14.55423 -13.84608 -13.70219 -13.50026 -13.35030 -13.15564 -12.29597 -12.00786 -11.85820 -11.61159 -11.14283 -11.06827 -11.00680 -10.72414 -10.63250 -10.44032 -10.03226 -9.52422 -9.03502 -8.36095 -8.22948 -7.46813 -5.96475 -4.00021 3.30137 3.34157 3.41510 3.46829 4.06003 4.40518 4.55230 5.01468 5.09123 5.19224 5.37186 5.40775 5.57270 5.59489 5.68519 5.71231 5.89119 5.92417 6.11146 6.22028 6.38673 6.49039 6.83688 7.11733 7.45383 7.66854 7.81736 8.03884 8.33863 8.84624 9.01624 9.48162 9.66442 11.11494 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.035760 B = 0.009405 C = 0.008488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.802257 B = 2976.366144 C = 3298.091552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.132 3.868 3 N -0.638 5.638 4 C 0.119 3.881 5 C -0.152 4.152 6 C 0.118 3.882 7 N -0.611 5.611 8 C 0.259 3.741 9 C -0.520 4.520 10 H 0.056 0.944 11 C 0.059 3.941 12 N -0.897 5.897 13 Si 0.897 3.103 14 H -0.274 1.274 15 H -0.284 1.284 16 H -0.283 1.283 17 C 0.703 3.297 18 O -0.590 6.590 19 H 0.058 0.942 20 H 0.049 0.951 21 H 0.062 0.938 22 H 0.082 0.918 23 H 0.065 0.935 24 H 0.056 0.944 25 H 0.071 0.929 26 H 0.087 0.913 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.056 0.944 30 H 0.031 0.969 31 H 0.045 0.955 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.055 -5.335 14.258 15.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.008 3.992 3 N -0.377 5.377 4 C -0.005 4.005 5 C -0.190 4.190 6 C -0.006 4.006 7 N -0.347 5.347 8 C 0.140 3.860 9 C -0.559 4.559 10 H 0.074 0.926 11 C -0.142 4.142 12 N -0.536 5.536 13 Si 0.725 3.275 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.209 1.209 17 C 0.405 3.595 18 O -0.468 6.468 19 H 0.077 0.923 20 H 0.068 0.932 21 H 0.082 0.918 22 H 0.100 0.900 23 H 0.084 0.916 24 H 0.074 0.926 25 H 0.089 0.911 26 H 0.105 0.895 27 H 0.090 0.910 28 H 0.095 0.905 29 H 0.074 0.926 30 H 0.049 0.951 31 H 0.063 0.937 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.022 -5.562 13.493 14.594 hybrid contribution -0.900 0.662 -0.217 1.138 sum -0.878 -4.900 13.275 14.178 Atomic orbital electron populations 1.22143 0.96684 1.01363 1.02342 1.21153 0.93884 0.81929 1.02200 1.46983 1.71583 1.14524 1.04649 1.21412 0.97814 0.95140 0.86098 1.22236 0.98897 0.98102 0.99788 1.21375 1.00684 0.93684 0.84878 1.47253 1.67399 1.11360 1.08640 1.19206 0.96364 0.93217 0.77220 1.21504 0.98306 1.32831 1.03235 0.92602 1.24930 0.96446 0.96552 0.96313 1.69943 1.28116 1.43921 1.11649 0.86457 0.83383 0.78936 0.78713 1.19902 1.21040 1.20921 1.15452 0.78830 0.82094 0.83074 1.90869 1.58625 1.64862 1.32428 0.92272 0.93212 0.91844 0.89994 0.91613 0.92618 0.91059 0.89460 0.90953 0.90527 0.92573 0.95124 0.93730 0.92882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.32 10.24 37.16 0.38 -1.94 16 2 C 0.13 1.95 6.07 -4.04 -0.02 1.93 16 3 N -0.64 -11.12 2.82 -179.77 -0.51 -11.63 16 4 C 0.12 1.54 6.54 -3.98 -0.03 1.52 16 5 C -0.15 -1.93 6.21 -26.42 -0.16 -2.09 16 6 C 0.12 2.03 6.55 -3.92 -0.03 2.00 16 7 N -0.61 -13.99 2.80 -181.08 -0.51 -14.50 16 8 C 0.26 7.12 5.11 -5.19 -0.03 7.09 16 9 C -0.52 -15.36 9.38 -34.44 -0.32 -15.68 16 10 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 11 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 12 N -0.90 -27.34 13.29 55.43 0.74 -26.61 16 13 Si 0.90 22.53 29.54 -169.99 -5.02 17.51 16 14 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 15 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 17 C 0.70 16.18 7.94 -88.07 -0.70 15.48 16 18 O -0.59 -16.16 15.07 5.29 0.08 -16.08 16 19 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 20 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 21 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 22 H 0.08 1.37 7.31 -51.93 -0.38 0.99 16 23 H 0.07 0.74 7.86 -51.92 -0.41 0.33 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.07 0.71 7.86 -51.93 -0.41 0.30 16 26 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.08 1.25 7.86 -51.93 -0.41 0.84 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.03 0.84 7.86 -51.93 -0.41 0.43 16 31 H 0.04 1.38 7.31 -51.93 -0.38 1.00 16 32 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 267.52 15.07 4.03 4.03 Total: -1.00 -34.70 267.52 -7.09 -41.78 By element: Atomic # 1 Polarization: 0.44 SS G_CDS: -4.90 Total: -4.46 kcal Atomic # 6 Polarization: 10.96 SS G_CDS: -1.01 Total: 9.95 kcal Atomic # 7 Polarization: -52.46 SS G_CDS: -0.28 Total: -52.73 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: 0.08 Total: -16.08 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -34.70 -7.09 -41.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259611143.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.934 kcal (2) G-P(sol) polarization free energy of solvation -34.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds