Wall clock time and date at job start Mon Mar 30 2020 02:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.47622 * 2 1 4 4 C 1.46384 * 119.32786 * 89.99316 * 3 2 1 5 5 C 1.53243 * 109.20453 * 150.91272 * 4 3 2 6 6 C 1.53360 * 108.49891 * 55.44381 * 5 4 3 7 7 N 1.46381 * 109.19727 * 304.58249 * 6 5 4 8 8 C 1.46502 * 119.32926 * 209.07243 * 7 6 5 9 9 C 1.50705 * 109.46763 * 269.97496 * 8 7 6 10 10 H 1.08002 * 120.00042 * 0.02562 * 9 8 7 11 11 C 1.37881 * 119.99743 * 179.97438 * 9 8 7 12 12 N 1.31512 * 120.00121 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99956 * 180.02562 * 11 9 8 14 14 H 1.48507 * 109.47044 * 0.02562 * 13 11 9 15 15 H 1.48496 * 109.47137 * 120.00366 * 13 11 9 16 16 H 1.48500 * 109.47282 * 240.00619 * 13 11 9 17 17 C 1.34131 * 119.33017 * 270.02073 * 3 2 1 18 18 O 1.21591 * 118.69702 * 0.56764 * 17 3 2 19 19 H 1.08998 * 109.47138 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.47295 * 300.00404 * 1 2 3 21 21 H 1.09006 * 109.46500 * 60.00099 * 1 2 3 22 22 H 1.09000 * 109.47295 * 239.99596 * 2 1 3 23 23 H 1.09011 * 109.47182 * 119.99743 * 2 1 3 24 24 H 1.09002 * 109.52654 * 270.84843 * 4 3 2 25 25 H 1.08995 * 109.52610 * 30.97910 * 4 3 2 26 26 H 1.08994 * 109.62104 * 175.23808 * 5 4 3 27 27 H 1.09000 * 109.62118 * 295.79300 * 5 4 3 28 28 H 1.09007 * 109.51198 * 184.66203 * 6 5 4 29 29 H 1.09001 * 109.54954 * 64.52552 * 6 5 4 30 30 H 1.08998 * 109.47514 * 29.97755 * 8 7 6 31 31 H 1.08996 * 109.47003 * 149.98142 * 8 7 6 32 32 H 0.96997 * 120.00049 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.2574 2.0572 1.2762 5 6 3.3706 3.0949 1.0963 6 6 2.9727 4.0431 -0.0414 7 7 2.6945 3.2594 -1.2460 8 6 2.9207 3.8618 -2.5622 9 6 1.6627 4.5532 -3.0210 10 1 0.7829 4.5451 -2.3947 11 6 1.6353 5.1971 -4.2400 12 7 2.7069 5.2074 -5.0024 13 14 0.0763 6.0547 -4.8085 14 1 -0.9793 5.8987 -3.7756 15 1 0.3537 7.4984 -5.0179 16 1 -0.3850 5.4492 -6.0836 17 6 2.2371 2.0008 -1.1694 18 8 2.0122 1.3975 -2.2008 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3634 0.5139 0.8899 21 1 -0.3632 0.5139 -0.8901 22 1 1.8934 -0.5139 -0.8899 23 1 1.8934 -0.5138 0.8901 24 1 1.3440 2.5555 1.6012 25 1 2.5593 1.3253 2.0253 26 1 3.4962 3.6606 2.0195 27 1 4.3033 2.5909 0.8429 28 1 3.7895 4.7375 -0.2391 29 1 2.0811 4.6013 0.2440 30 1 3.7307 4.5881 -2.4950 31 1 3.1888 3.0836 -3.2767 32 1 2.6875 5.6600 -5.8601 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259611143.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:10 Heat of formation + Delta-G solvation = -50.897110 kcal Electronic energy + Delta-G solvation = -14717.316873 eV Core-core repulsion = 12290.963789 eV Total energy + Delta-G solvation = -2426.353084 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.53389 -37.29155 -37.08483 -34.86926 -32.82139 -30.86759 -29.34977 -26.66257 -25.40206 -23.49082 -23.14514 -19.27758 -18.58755 -18.30655 -17.76793 -16.78300 -16.49185 -15.39531 -15.23042 -14.95116 -14.65448 -14.51014 -14.11602 -13.54270 -13.38211 -13.12681 -12.88377 -12.74483 -12.47410 -12.27071 -12.19148 -12.07142 -11.73399 -11.65720 -10.84767 -10.63798 -9.77338 -9.20599 -8.21531 -6.36637 1.34083 1.37100 1.48892 1.83839 2.31520 2.41112 2.99051 3.06984 3.89039 4.00003 4.08969 4.33452 4.41176 4.50133 4.59313 4.71170 4.73945 4.85168 4.87618 5.01732 5.07213 5.20561 5.25608 5.33465 5.57623 5.76621 5.83576 6.08198 6.14201 6.72000 7.19787 7.30194 7.78873 8.85071 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.035760 B = 0.009405 C = 0.008488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.802257 B = 2976.366144 C = 3298.091552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.125 3.875 3 N -0.631 5.631 4 C 0.110 3.890 5 C -0.138 4.138 6 C 0.106 3.894 7 N -0.621 5.621 8 C 0.276 3.724 9 C -0.539 4.539 10 H 0.046 0.954 11 C 0.006 3.994 12 N -0.928 5.928 13 Si 0.969 3.031 14 H -0.270 1.270 15 H -0.265 1.265 16 H -0.280 1.280 17 C 0.691 3.309 18 O -0.651 6.651 19 H 0.086 0.914 20 H 0.069 0.931 21 H 0.016 0.984 22 H 0.051 0.949 23 H 0.118 0.882 24 H 0.067 0.933 25 H 0.118 0.882 26 H 0.136 0.864 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.058 0.942 30 H 0.025 0.975 31 H -0.004 1.004 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.688 -5.145 17.111 17.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.003 3.997 3 N -0.369 5.369 4 C -0.012 4.012 5 C -0.176 4.176 6 C -0.016 4.016 7 N -0.356 5.356 8 C 0.154 3.846 9 C -0.578 4.578 10 H 0.064 0.936 11 C -0.193 4.193 12 N -0.568 5.568 13 Si 0.794 3.206 14 H -0.195 1.195 15 H -0.190 1.190 16 H -0.206 1.206 17 C 0.394 3.606 18 O -0.534 6.534 19 H 0.105 0.895 20 H 0.088 0.912 21 H 0.035 0.965 22 H 0.070 0.930 23 H 0.136 0.864 24 H 0.086 0.914 25 H 0.136 0.864 26 H 0.154 0.846 27 H 0.087 0.913 28 H 0.098 0.902 29 H 0.076 0.924 30 H 0.043 0.957 31 H 0.014 0.986 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.712 -5.370 16.440 17.309 hybrid contribution -0.635 0.564 -1.055 1.354 sum -1.346 -4.806 15.385 16.174 Atomic orbital electron populations 1.22079 0.96027 1.02774 1.00877 1.21429 0.94449 0.80665 1.03205 1.47104 1.70112 1.15268 1.04423 1.21845 0.98582 0.96274 0.84477 1.22242 0.98432 0.97422 0.99538 1.21741 1.01020 0.94605 0.84255 1.47177 1.67608 1.12022 1.08780 1.18648 0.95542 0.91318 0.79076 1.21702 0.98583 1.33614 1.03894 0.93589 1.25872 1.00079 0.97106 0.96204 1.70055 1.30239 1.44440 1.12099 0.85346 0.78863 0.78449 0.77983 1.19472 1.18999 1.20627 1.15805 0.78692 0.81962 0.84176 1.90812 1.61061 1.66267 1.35240 0.89519 0.91249 0.96506 0.93018 0.86432 0.91425 0.86413 0.84625 0.91266 0.90243 0.92373 0.95702 0.98632 0.92352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.19 10.24 71.98 0.74 -3.45 16 2 C 0.13 3.48 6.07 86.38 0.52 4.00 16 3 N -0.63 -21.10 2.82 -841.28 -2.37 -23.47 16 4 C 0.11 2.37 6.54 86.48 0.57 2.94 16 5 C -0.14 -3.00 6.21 30.80 0.19 -2.81 16 6 C 0.11 3.54 6.55 86.52 0.57 4.10 16 7 N -0.62 -29.25 2.80 -845.42 -2.37 -31.61 16 8 C 0.28 15.98 5.11 85.63 0.44 16.42 16 9 C -0.54 -33.02 9.38 25.60 0.24 -32.78 16 10 H 0.05 2.83 7.81 -2.91 -0.02 2.81 16 11 C 0.01 0.36 5.46 84.66 0.46 0.82 16 12 N -0.93 -58.08 13.29 21.45 0.28 -57.79 16 13 Si 0.97 46.77 29.54 68.60 2.03 48.79 16 14 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 15 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 16 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 17 C 0.69 32.73 7.94 179.46 1.42 34.15 16 18 O -0.65 -37.90 15.07 -4.00 -0.06 -37.96 16 19 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 20 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 21 H 0.02 0.57 8.14 -2.38 -0.02 0.55 16 22 H 0.05 1.75 7.31 -2.39 -0.02 1.74 16 23 H 0.12 2.08 7.86 -2.38 -0.02 2.06 16 24 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.12 1.57 7.86 -2.39 -0.02 1.55 16 26 H 0.14 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.07 1.59 8.14 -2.39 -0.02 1.58 16 28 H 0.08 2.55 7.86 -2.38 -0.02 2.53 16 29 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.03 1.44 7.86 -2.39 -0.02 1.42 16 31 H 0.00 -0.30 7.31 -2.39 -0.02 -0.31 16 32 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -81.35 267.52 3.75 -77.61 By element: Atomic # 1 Polarization: -0.05 SS G_CDS: 1.08 Total: 1.03 kcal Atomic # 6 Polarization: 18.26 SS G_CDS: 5.15 Total: 23.41 kcal Atomic # 7 Polarization: -108.42 SS G_CDS: -4.45 Total: -112.87 kcal Atomic # 8 Polarization: -37.90 SS G_CDS: -0.06 Total: -37.96 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.79 kcal Total: -81.35 3.75 -77.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259611143.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.712 kcal (2) G-P(sol) polarization free energy of solvation -81.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds