Wall clock time and date at job start Mon Mar 30 2020 02:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46381 * 119.33367 * 2 1 4 4 C 1.53496 * 109.01604 * 150.82606 * 3 2 1 5 5 C 1.53239 * 108.43047 * 55.78954 * 4 3 2 6 6 N 1.46378 * 109.15633 * 304.38211 * 5 4 3 7 7 C 1.46497 * 119.33425 * 209.08243 * 6 5 4 8 8 C 1.53000 * 109.47148 * 269.97744 * 7 6 5 9 9 C 1.50699 * 109.47573 * 179.97438 * 8 7 6 10 10 H 1.08003 * 119.99843 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00272 * 179.97438 * 9 8 7 12 12 N 1.31505 * 119.99927 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99757 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47177 * 90.00608 * 13 11 9 15 15 H 1.48500 * 109.47080 * 210.00186 * 13 11 9 16 16 H 1.48495 * 109.47608 * 330.00442 * 13 11 9 17 17 C 1.34137 * 121.33880 * 29.05927 * 6 5 4 18 18 O 1.21593 * 118.70092 * 179.40510 * 17 6 5 19 19 H 1.09002 * 109.47391 * 179.72555 * 1 2 3 20 20 H 1.09001 * 109.46813 * 59.72612 * 1 2 3 21 21 H 1.09004 * 109.47041 * 299.72739 * 1 2 3 22 22 H 1.08999 * 109.52451 * 270.86504 * 3 2 1 23 23 H 1.09003 * 109.51928 * 31.06122 * 3 2 1 24 24 H 1.09004 * 109.79799 * 296.04296 * 4 3 2 25 25 H 1.08996 * 109.73112 * 175.49587 * 4 3 2 26 26 H 1.08998 * 109.52801 * 184.48346 * 5 4 3 27 27 H 1.09000 * 109.52484 * 64.28900 * 5 4 3 28 28 H 1.09000 * 109.47240 * 29.97668 * 7 6 5 29 29 H 1.09005 * 109.47620 * 149.97886 * 7 6 5 30 30 H 1.08996 * 109.47452 * 300.00050 * 8 7 6 31 31 H 1.09003 * 109.47301 * 60.00102 * 8 7 6 32 32 H 0.97006 * 119.99725 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1821 1.2761 0.0000 4 6 3.5317 1.0914 0.7074 5 6 4.2928 -0.0416 0.0108 6 7 3.4612 -1.2462 0.0049 7 6 4.1044 -2.5624 0.0110 8 6 4.3396 -3.0219 -1.4293 9 6 5.0018 -4.3756 -1.4230 10 1 5.2316 -4.8600 -0.4855 11 6 5.3134 -4.9962 -2.6142 12 7 5.0331 -4.4066 -3.7558 13 14 6.1336 -6.6744 -2.6063 14 1 5.0932 -7.7340 -2.6131 15 1 6.9889 -6.8130 -3.8123 16 1 6.9708 -6.8106 -1.3874 17 6 2.1221 -1.1695 -0.0056 18 8 1.4782 -2.2008 -0.0212 19 1 -0.3634 -1.0276 -0.0049 20 1 -0.3633 0.5181 -0.8875 21 1 -0.3633 0.5096 0.8925 22 1 2.3470 1.6013 -1.0272 23 1 1.5933 2.0248 0.5301 24 1 3.3679 0.8331 1.7536 25 1 4.1096 2.0134 0.6442 26 1 5.2199 -0.2418 0.5477 27 1 4.5202 0.2491 -1.0148 28 1 5.0596 -2.4976 0.5322 29 1 3.4604 -3.2793 0.5205 30 1 3.3845 -3.0867 -1.9505 31 1 4.9836 -2.3052 -1.9388 32 1 5.2526 -4.8431 -4.5938 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259722761.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:33 Heat of formation + Delta-G solvation = -28.168552 kcal Electronic energy + Delta-G solvation = -14454.836502 eV Core-core repulsion = 12029.469001 eV Total energy + Delta-G solvation = -2425.367500 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.25510 -36.01866 -35.61390 -33.04773 -31.32410 -29.35030 -27.25602 -25.69033 -23.75599 -22.58203 -20.89560 -18.02745 -17.07060 -16.68418 -16.01187 -15.62271 -14.48187 -14.25281 -13.90273 -13.70229 -13.46316 -12.88982 -12.46968 -12.22516 -12.13479 -11.58631 -11.24325 -11.20633 -11.14268 -10.86823 -10.59801 -9.81164 -9.76199 -9.48390 -9.07103 -8.48332 -8.28803 -7.81245 -5.94384 -3.96983 3.01298 3.36890 3.42456 3.45529 3.69875 4.06091 4.52132 4.76570 4.86967 5.10306 5.31766 5.41690 5.44791 5.54780 5.60560 5.71952 5.80771 6.00689 6.12975 6.15334 6.63900 6.68583 6.97019 6.98343 7.33917 7.75367 7.88704 8.08787 8.40231 8.45201 9.06304 9.13579 9.66226 11.17248 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.050671 B = 0.007244 C = 0.006860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.455149 B = 3864.561287 C = 4080.853574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.638 5.638 3 C 0.117 3.883 4 C -0.151 4.151 5 C 0.113 3.887 6 N -0.619 5.619 7 C 0.133 3.867 8 C 0.013 3.987 9 C -0.518 4.518 10 H 0.056 0.944 11 C 0.057 3.943 12 N -0.894 5.894 13 Si 0.894 3.106 14 H -0.280 1.280 15 H -0.287 1.287 16 H -0.274 1.274 17 C 0.705 3.295 18 O -0.591 6.591 19 H 0.090 0.910 20 H 0.051 0.949 21 H 0.050 0.950 22 H 0.061 0.939 23 H 0.075 0.925 24 H 0.073 0.927 25 H 0.091 0.909 26 H 0.080 0.920 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.022 0.978 31 H 0.013 0.987 32 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.678 13.661 8.164 16.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.377 5.377 3 C -0.007 4.007 4 C -0.189 4.189 5 C -0.011 4.011 6 N -0.355 5.355 7 C 0.012 3.988 8 C -0.025 4.025 9 C -0.557 4.557 10 H 0.075 0.925 11 C -0.144 4.144 12 N -0.534 5.534 13 Si 0.722 3.278 14 H -0.206 1.206 15 H -0.213 1.213 16 H -0.198 1.198 17 C 0.407 3.593 18 O -0.469 6.469 19 H 0.108 0.892 20 H 0.070 0.930 21 H 0.069 0.931 22 H 0.079 0.921 23 H 0.094 0.906 24 H 0.092 0.908 25 H 0.110 0.890 26 H 0.098 0.902 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.040 0.960 31 H 0.032 0.968 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.991 13.064 7.976 15.818 hybrid contribution 0.538 -0.684 -0.228 0.899 sum -3.453 12.381 7.748 15.008 Atomic orbital electron populations 1.21485 0.78589 1.04336 1.00035 1.46758 1.06703 1.04639 1.79597 1.21503 0.92876 0.85874 1.00418 1.22241 0.96436 0.99794 1.00439 1.21487 0.94267 0.84694 1.00647 1.47123 1.03411 1.08140 1.76803 1.21775 0.95240 0.80403 1.01353 1.19382 0.97266 0.95774 0.90077 1.21122 1.39169 1.02991 0.92450 0.92537 1.25002 0.95962 0.97818 0.95585 1.69983 1.47807 1.38335 0.97234 0.86563 0.79365 0.84458 0.77411 1.20623 1.21284 1.19844 1.15432 0.82278 0.83440 0.78122 1.90893 1.65288 1.32491 1.58251 0.89180 0.93006 0.93136 0.92053 0.90634 0.90806 0.89030 0.90172 0.91901 0.92013 0.90888 0.96000 0.96816 0.93060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.30 10.60 59.85 0.63 1.93 16 2 N -0.64 -10.04 3.21 -187.54 -0.60 -10.64 16 3 C 0.12 1.31 6.56 -3.85 -0.03 1.29 16 4 C -0.15 -1.59 6.21 -26.35 -0.16 -1.76 16 5 C 0.11 1.63 6.54 -3.98 -0.03 1.60 16 6 N -0.62 -12.14 2.82 -179.78 -0.51 -12.65 16 7 C 0.13 3.02 5.29 -4.04 -0.02 3.00 16 8 C 0.01 0.36 5.30 -27.88 -0.15 0.21 16 9 C -0.52 -15.26 9.11 -34.44 -0.31 -15.57 16 10 H 0.06 1.59 7.74 -52.48 -0.41 1.19 16 11 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 12 N -0.89 -27.88 13.29 55.43 0.74 -27.15 16 13 Si 0.89 22.28 29.54 -169.99 -5.02 17.26 16 14 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 15 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 16 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 17 C 0.70 14.51 7.94 -88.06 -0.70 13.81 16 18 O -0.59 -14.65 14.82 5.28 0.08 -14.57 16 19 H 0.09 1.40 6.76 -51.93 -0.35 1.05 16 20 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 21 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.08 0.64 8.06 -51.93 -0.42 0.22 16 24 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.08 1.04 7.86 -51.93 -0.41 0.63 16 27 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.06 1.25 7.86 -51.93 -0.41 0.85 16 29 H 0.07 1.77 7.31 -51.93 -0.38 1.39 16 30 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 267.05 15.07 4.02 4.02 Total: -1.00 -35.46 267.05 -7.04 -42.50 By element: Atomic # 1 Polarization: -0.01 SS G_CDS: -4.89 Total: -4.90 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: -0.86 Total: 6.13 kcal Atomic # 7 Polarization: -50.06 SS G_CDS: -0.37 Total: -50.44 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: 0.08 Total: -14.57 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -35.46 -7.04 -42.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259722761.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.334 kcal (2) G-P(sol) polarization free energy of solvation -35.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds