Wall clock time and date at job start Mon Mar 30 2020 02:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46381 * 119.33367 * 2 1 4 4 C 1.53496 * 109.01604 * 150.82606 * 3 2 1 5 5 C 1.53239 * 108.43047 * 55.78954 * 4 3 2 6 6 N 1.46378 * 109.15633 * 304.38211 * 5 4 3 7 7 C 1.46497 * 119.33425 * 209.08243 * 6 5 4 8 8 C 1.53000 * 109.47148 * 269.97744 * 7 6 5 9 9 C 1.50699 * 109.47573 * 179.97438 * 8 7 6 10 10 H 1.08003 * 119.99843 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00272 * 179.97438 * 9 8 7 12 12 N 1.31505 * 119.99927 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99757 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47177 * 90.00608 * 13 11 9 15 15 H 1.48500 * 109.47080 * 210.00186 * 13 11 9 16 16 H 1.48495 * 109.47608 * 330.00442 * 13 11 9 17 17 C 1.34137 * 121.33880 * 29.05927 * 6 5 4 18 18 O 1.21593 * 118.70092 * 179.40510 * 17 6 5 19 19 H 1.09002 * 109.47391 * 179.72555 * 1 2 3 20 20 H 1.09001 * 109.46813 * 59.72612 * 1 2 3 21 21 H 1.09004 * 109.47041 * 299.72739 * 1 2 3 22 22 H 1.08999 * 109.52451 * 270.86504 * 3 2 1 23 23 H 1.09003 * 109.51928 * 31.06122 * 3 2 1 24 24 H 1.09004 * 109.79799 * 296.04296 * 4 3 2 25 25 H 1.08996 * 109.73112 * 175.49587 * 4 3 2 26 26 H 1.08998 * 109.52801 * 184.48346 * 5 4 3 27 27 H 1.09000 * 109.52484 * 64.28900 * 5 4 3 28 28 H 1.09000 * 109.47240 * 29.97668 * 7 6 5 29 29 H 1.09005 * 109.47620 * 149.97886 * 7 6 5 30 30 H 1.08996 * 109.47452 * 300.00050 * 8 7 6 31 31 H 1.09003 * 109.47301 * 60.00102 * 8 7 6 32 32 H 0.97006 * 119.99725 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1821 1.2761 0.0000 4 6 3.5317 1.0914 0.7074 5 6 4.2928 -0.0416 0.0108 6 7 3.4612 -1.2462 0.0049 7 6 4.1044 -2.5624 0.0110 8 6 4.3396 -3.0219 -1.4293 9 6 5.0018 -4.3756 -1.4230 10 1 5.2316 -4.8600 -0.4855 11 6 5.3134 -4.9962 -2.6142 12 7 5.0331 -4.4066 -3.7558 13 14 6.1336 -6.6744 -2.6063 14 1 5.0932 -7.7340 -2.6131 15 1 6.9889 -6.8130 -3.8123 16 1 6.9708 -6.8106 -1.3874 17 6 2.1221 -1.1695 -0.0056 18 8 1.4782 -2.2008 -0.0212 19 1 -0.3634 -1.0276 -0.0049 20 1 -0.3633 0.5181 -0.8875 21 1 -0.3633 0.5096 0.8925 22 1 2.3470 1.6013 -1.0272 23 1 1.5933 2.0248 0.5301 24 1 3.3679 0.8331 1.7536 25 1 4.1096 2.0134 0.6442 26 1 5.2199 -0.2418 0.5477 27 1 4.5202 0.2491 -1.0148 28 1 5.0596 -2.4976 0.5322 29 1 3.4604 -3.2793 0.5205 30 1 3.3845 -3.0867 -1.9505 31 1 4.9836 -2.3052 -1.9388 32 1 5.2526 -4.8431 -4.5938 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259722761.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:33 Heat of formation + Delta-G solvation = -52.991317 kcal Electronic energy + Delta-G solvation = -14455.912898 eV Core-core repulsion = 12029.469001 eV Total energy + Delta-G solvation = -2426.443896 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.67142 -37.44895 -37.11203 -35.13774 -32.82558 -31.14806 -28.39686 -27.39221 -25.41653 -23.80529 -22.80003 -19.30401 -18.73474 -18.43143 -17.58017 -17.03055 -16.50028 -15.50004 -15.30878 -15.12336 -14.69459 -14.59254 -14.25196 -13.55363 -13.43604 -13.33800 -12.85059 -12.65971 -12.55646 -12.28219 -12.19152 -11.86795 -11.70811 -11.41098 -10.98317 -10.59348 -9.87204 -9.29238 -8.22446 -6.35386 1.38758 1.42329 1.52914 1.68635 2.17340 2.40255 2.82988 3.10669 3.82192 3.94987 4.11690 4.31407 4.43303 4.54213 4.58839 4.69765 4.74662 4.78829 4.83073 4.94006 4.97081 5.21907 5.32826 5.43826 5.58589 5.64014 5.81118 5.98589 6.20100 6.80571 6.97156 7.33919 7.57826 8.90077 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.050671 B = 0.007244 C = 0.006860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.455149 B = 3864.561287 C = 4080.853574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.635 5.635 3 C 0.107 3.893 4 C -0.138 4.138 5 C 0.100 3.900 6 N -0.625 5.625 7 C 0.150 3.850 8 C 0.027 3.973 9 C -0.544 4.544 10 H 0.066 0.934 11 C -0.002 4.002 12 N -0.935 5.935 13 Si 0.973 3.027 14 H -0.277 1.277 15 H -0.278 1.278 16 H -0.256 1.256 17 C 0.690 3.310 18 O -0.649 6.649 19 H 0.055 0.945 20 H 0.073 0.927 21 H 0.086 0.914 22 H 0.067 0.933 23 H 0.117 0.883 24 H 0.075 0.925 25 H 0.136 0.864 26 H 0.096 0.904 27 H 0.056 0.944 28 H 0.090 0.910 29 H 0.050 0.950 30 H -0.031 1.031 31 H -0.003 1.003 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.755 15.142 9.389 18.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.373 5.373 3 C -0.014 4.014 4 C -0.175 4.175 5 C -0.022 4.022 6 N -0.360 5.360 7 C 0.027 3.973 8 C -0.011 4.011 9 C -0.583 4.583 10 H 0.085 0.915 11 C -0.200 4.200 12 N -0.575 5.575 13 Si 0.797 3.203 14 H -0.203 1.203 15 H -0.203 1.203 16 H -0.180 1.180 17 C 0.392 3.608 18 O -0.532 6.532 19 H 0.074 0.926 20 H 0.092 0.908 21 H 0.105 0.895 22 H 0.085 0.915 23 H 0.135 0.865 24 H 0.094 0.906 25 H 0.154 0.846 26 H 0.115 0.885 27 H 0.074 0.926 28 H 0.108 0.892 29 H 0.068 0.932 30 H -0.013 1.013 31 H 0.015 0.985 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.064 14.635 9.218 17.565 hybrid contribution 0.207 -1.052 -0.648 1.253 sum -2.858 13.582 8.570 16.313 Atomic orbital electron populations 1.21664 0.77285 1.03022 1.02818 1.46955 1.07747 1.04656 1.77906 1.21912 0.93575 0.84287 1.01667 1.22252 0.95946 0.99728 0.99623 1.21873 0.94973 0.84027 1.01286 1.47126 1.03777 1.08570 1.76553 1.21322 0.96216 0.82045 0.97747 1.19176 0.93850 0.95457 0.92623 1.21581 1.39509 1.03975 0.93197 0.91531 1.26065 0.96427 1.02515 0.94976 1.70131 1.48801 1.40483 0.98086 0.85333 0.78351 0.78340 0.78311 1.20253 1.20349 1.17956 1.15835 0.82510 0.84300 0.78114 1.90842 1.66573 1.35046 1.60782 0.92574 0.90843 0.89544 0.91491 0.86527 0.90596 0.84644 0.88529 0.92551 0.89194 0.93175 1.01277 0.98479 0.92736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.37 10.60 127.77 1.35 3.73 16 2 N -0.63 -19.24 3.21 -865.86 -2.78 -22.02 16 3 C 0.11 2.03 6.56 86.57 0.57 2.60 16 4 C -0.14 -2.39 6.21 30.84 0.19 -2.20 16 5 C 0.10 2.73 6.54 86.48 0.57 3.30 16 6 N -0.63 -24.79 2.82 -841.31 -2.37 -27.16 16 7 C 0.15 6.96 5.29 86.38 0.46 7.42 16 8 C 0.03 1.57 5.30 29.85 0.16 1.73 16 9 C -0.54 -32.77 9.11 25.60 0.23 -32.53 16 10 H 0.07 3.78 7.74 -2.91 -0.02 3.75 16 11 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 12 N -0.94 -59.79 13.29 21.45 0.28 -59.50 16 13 Si 0.97 45.91 29.54 68.60 2.03 47.94 16 14 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 15 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 16 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 17 C 0.69 29.07 7.94 179.45 1.42 30.50 16 18 O -0.65 -34.09 14.82 -4.01 -0.06 -34.15 16 19 H 0.06 1.81 6.76 -2.39 -0.02 1.79 16 20 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 21 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 22 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 23 H 0.12 1.34 8.06 -2.39 -0.02 1.32 16 24 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.14 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.10 2.29 7.86 -2.39 -0.02 2.27 16 27 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.09 3.62 7.86 -2.39 -0.02 3.61 16 29 H 0.05 2.54 7.31 -2.38 -0.02 2.52 16 30 H -0.03 -2.11 8.14 -2.39 -0.02 -2.13 16 31 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 32 H 0.26 15.73 8.31 -92.70 -0.77 14.96 16 Total: -1.00 -81.99 267.05 3.60 -78.39 By element: Atomic # 1 Polarization: 0.56 SS G_CDS: 1.08 Total: 1.64 kcal Atomic # 6 Polarization: 9.45 SS G_CDS: 5.41 Total: 14.87 kcal Atomic # 7 Polarization: -103.82 SS G_CDS: -4.87 Total: -108.68 kcal Atomic # 8 Polarization: -34.09 SS G_CDS: -0.06 Total: -34.15 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -81.99 3.60 -78.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259722761.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.398 kcal (2) G-P(sol) polarization free energy of solvation -81.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds