Wall clock time and date at job start Mon Mar 30 2020 03:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42897 * 113.99884 * 2 1 4 4 H 1.08998 * 109.47261 * 329.99619 * 3 2 1 5 5 C 1.53001 * 109.47664 * 89.99633 * 3 2 1 6 6 C 1.53006 * 109.46700 * 60.00113 * 5 3 2 7 7 C 1.52998 * 109.46749 * 180.02562 * 6 5 3 8 8 C 1.53002 * 109.47219 * 299.99898 * 6 5 3 9 9 C 1.52997 * 109.47503 * 60.00321 * 6 5 3 10 10 C 1.53006 * 109.46916 * 300.00087 * 9 6 5 11 11 C 1.52995 * 109.47436 * 59.99759 * 10 9 6 12 12 H 1.08998 * 109.47084 * 59.99476 * 11 10 9 13 13 C 1.50692 * 109.47271 * 180.02562 * 11 10 9 14 14 H 1.08002 * 119.99949 * 120.00429 * 13 11 10 15 15 C 1.37877 * 120.00063 * 300.00192 * 13 11 10 16 16 N 1.31516 * 120.00009 * 359.97438 * 15 13 11 17 17 Si 1.86802 * 120.00165 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47259 * 59.99519 * 17 15 13 19 19 H 1.48494 * 109.47245 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46788 * 299.99657 * 17 15 13 21 21 H 1.08998 * 109.47019 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.47412 * 300.00094 * 1 2 3 23 23 H 1.09000 * 109.47080 * 60.00385 * 1 2 3 24 24 H 1.08993 * 109.46963 * 300.00124 * 5 3 2 25 25 H 1.09001 * 109.47226 * 179.97438 * 5 3 2 26 26 H 1.08996 * 109.47848 * 59.99940 * 7 6 5 27 27 H 1.09010 * 109.47087 * 179.97438 * 7 6 5 28 28 H 1.09001 * 109.47266 * 299.99488 * 7 6 5 29 29 H 1.09008 * 109.46873 * 71.16061 * 8 6 5 30 30 H 1.08993 * 109.47565 * 191.16140 * 8 6 5 31 31 H 1.09007 * 109.47055 * 311.16420 * 8 6 5 32 32 H 1.09001 * 109.47243 * 59.99622 * 9 6 5 33 33 H 1.08998 * 109.47119 * 180.02562 * 9 6 5 34 34 H 1.08993 * 109.46999 * 179.97438 * 10 9 6 35 35 H 1.09001 * 109.46785 * 299.99816 * 10 9 6 36 36 H 0.96993 * 119.99753 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 1 1.3449 1.9993 -0.5139 5 6 2.2175 1.7715 1.4425 6 6 3.1514 0.7975 2.1638 7 6 3.3583 1.2632 3.6064 8 6 2.5291 -0.6002 2.1639 9 6 4.5001 0.7553 1.4426 10 6 4.2927 0.2893 0.0001 11 6 3.3589 1.2632 -0.7213 12 1 3.8022 2.2590 -0.7212 13 6 3.1542 0.8039 -2.1418 14 1 2.1615 0.5663 -2.4947 15 6 4.2341 0.6871 -2.9910 16 7 5.4428 0.9770 -2.5614 17 14 3.9802 0.1184 -4.7522 18 1 3.0741 1.0642 -5.4520 19 1 5.2889 0.0775 -5.4526 20 1 3.3756 -1.2380 -4.7520 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.2568 1.8016 1.9562 25 1 2.6613 2.7671 1.4424 26 1 2.3974 1.2930 4.1200 27 1 4.0233 0.5691 4.1205 28 1 3.8015 2.2591 3.6067 29 1 2.5631 -1.0131 1.1556 30 1 3.0881 -1.2468 2.8402 31 1 1.4928 -0.5366 2.4957 32 1 4.9434 1.7511 1.4425 33 1 5.1652 0.0611 1.9562 34 1 5.2534 0.2597 -0.5138 35 1 3.8494 -0.7065 0.0001 36 1 6.2024 0.8952 -3.1590 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259798011.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:53 Heat of formation + Delta-G solvation = -67.095880 kcal Electronic energy + Delta-G solvation = -15606.279984 eV Core-core repulsion = 13282.764812 eV Total energy + Delta-G solvation = -2323.515172 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.18626 -35.73439 -33.54675 -30.84249 -29.22661 -26.71712 -26.55307 -25.81983 -23.29228 -21.48862 -19.69835 -17.68938 -16.30280 -15.46761 -15.00081 -14.43804 -14.21834 -13.53916 -13.41299 -12.84648 -12.63701 -12.20646 -11.74952 -11.69040 -11.39196 -11.19429 -11.03006 -10.80713 -10.66465 -10.53554 -10.34505 -10.08482 -9.89406 -9.59983 -9.25580 -8.93626 -8.55018 -8.33752 -8.14490 -5.88279 -3.92335 3.37733 3.42047 3.45302 4.51913 4.73205 5.37445 5.41698 5.48849 5.52690 5.83207 5.90340 5.98574 6.05996 6.15519 6.19044 6.25337 6.33290 6.39216 6.42441 6.48178 6.55589 6.74131 6.79008 6.90779 6.94390 7.13245 7.19263 7.51324 7.59732 7.84280 8.01582 8.24770 8.27964 8.59099 9.08912 9.70096 11.17331 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.037117 B = 0.011298 C = 0.009547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.195033 B = 2477.626032 C = 2932.212399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.356 6.356 3 C 0.098 3.902 4 H 0.042 0.958 5 C -0.127 4.127 6 C -0.057 4.057 7 C -0.139 4.139 8 C -0.137 4.137 9 C -0.107 4.107 10 C -0.108 4.108 11 C 0.055 3.945 12 H 0.033 0.967 13 C -0.498 4.498 14 H 0.054 0.946 15 C 0.059 3.941 16 N -0.893 5.893 17 Si 0.888 3.112 18 H -0.280 1.280 19 H -0.289 1.289 20 H -0.278 1.278 21 H 0.071 0.929 22 H 0.025 0.975 23 H 0.032 0.968 24 H 0.044 0.956 25 H 0.061 0.939 26 H 0.044 0.956 27 H 0.048 0.952 28 H 0.047 0.953 29 H 0.096 0.904 30 H 0.029 0.971 31 H 0.036 0.964 32 H 0.047 0.953 33 H 0.040 0.960 34 H 0.087 0.913 35 H 0.047 0.953 36 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.528 -0.167 8.064 9.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.275 6.275 3 C 0.040 3.960 4 H 0.060 0.940 5 C -0.165 4.165 6 C -0.057 4.057 7 C -0.197 4.197 8 C -0.193 4.193 9 C -0.145 4.145 10 C -0.145 4.145 11 C 0.037 3.963 12 H 0.051 0.949 13 C -0.537 4.537 14 H 0.072 0.928 15 C -0.141 4.141 16 N -0.533 5.533 17 Si 0.717 3.283 18 H -0.206 1.206 19 H -0.215 1.215 20 H -0.204 1.204 21 H 0.089 0.911 22 H 0.043 0.957 23 H 0.050 0.950 24 H 0.063 0.937 25 H 0.080 0.920 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.114 0.886 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.106 0.894 35 H 0.065 0.935 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.224 -0.323 7.999 9.560 hybrid contribution -0.362 0.004 -0.879 0.950 sum -5.586 -0.320 7.121 9.056 Atomic orbital electron populations 1.22618 0.84493 1.01089 0.98578 1.88090 1.16515 1.28364 1.94488 1.22348 0.97462 0.83249 0.92918 0.94029 1.22109 0.98158 0.98630 0.97617 1.20415 0.96327 0.95631 0.93324 1.21911 1.00389 1.00495 0.96881 1.22103 0.98030 0.95574 1.03643 1.21676 0.94395 0.99988 0.98402 1.21580 1.02986 0.98854 0.91126 1.18764 0.88179 0.96070 0.93328 0.94900 1.21071 0.93362 1.44012 0.95218 0.92818 1.24931 0.95319 0.95669 0.98194 1.69871 0.98413 1.49596 1.35420 0.86719 0.77049 0.79293 0.85247 1.20555 1.21480 1.20380 0.91074 0.95665 0.94975 0.93678 0.92048 0.93721 0.93337 0.93371 0.88557 0.95169 0.94499 0.93416 0.94083 0.89438 0.93463 0.93166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.82 101.05 1.09 1.58 16 2 O -0.36 -7.29 5.72 -35.23 -0.20 -7.49 16 3 C 0.10 2.05 2.29 -26.73 -0.06 1.99 16 4 H 0.04 0.87 7.79 -51.93 -0.40 0.47 16 5 C -0.13 -2.31 4.55 -26.73 -0.12 -2.43 16 6 C -0.06 -1.01 0.77 -154.51 -0.12 -1.13 16 7 C -0.14 -2.08 8.45 37.16 0.31 -1.76 16 8 C -0.14 -2.41 7.12 37.16 0.26 -2.14 16 9 C -0.11 -2.14 4.73 -26.73 -0.13 -2.27 16 10 C -0.11 -2.57 4.64 -26.73 -0.12 -2.70 16 11 C 0.05 1.36 1.94 -91.77 -0.18 1.19 16 12 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 13 C -0.50 -13.75 8.22 -34.44 -0.28 -14.04 16 14 H 0.05 1.49 7.70 -52.49 -0.40 1.09 16 15 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 16 N -0.89 -25.68 11.32 55.43 0.63 -25.05 16 17 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 22 H 0.02 0.37 7.87 -51.93 -0.41 -0.04 16 23 H 0.03 0.52 8.08 -51.93 -0.42 0.10 16 24 H 0.04 0.74 7.87 -51.93 -0.41 0.33 16 25 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.10 1.94 3.79 -51.92 -0.20 1.74 16 30 H 0.03 0.49 8.10 -51.93 -0.42 0.07 16 31 H 0.04 0.60 8.09 -51.93 -0.42 0.18 16 32 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 35 H 0.05 1.16 5.95 -51.93 -0.31 0.85 16 36 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 271.49 15.07 4.09 4.09 Total: -1.00 -28.13 271.49 -6.16 -34.30 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -6.22 Total: -2.35 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: 0.56 Total: -20.16 kcal Atomic # 7 Polarization: -25.68 SS G_CDS: 0.63 Total: -25.05 kcal Atomic # 8 Polarization: -7.29 SS G_CDS: -0.20 Total: -7.49 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -28.13 -6.16 -34.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259798011.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.797 kcal (2) G-P(sol) polarization free energy of solvation -28.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds