Wall clock time and date at job start Mon Mar 30 2020 03:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42897 * 113.99884 * 2 1 4 4 H 1.08998 * 109.47261 * 329.99619 * 3 2 1 5 5 C 1.53001 * 109.47664 * 89.99633 * 3 2 1 6 6 C 1.53006 * 109.46700 * 60.00113 * 5 3 2 7 7 C 1.52998 * 109.46749 * 180.02562 * 6 5 3 8 8 C 1.53002 * 109.47219 * 299.99898 * 6 5 3 9 9 C 1.52997 * 109.47503 * 60.00321 * 6 5 3 10 10 C 1.53006 * 109.46916 * 300.00087 * 9 6 5 11 11 C 1.52995 * 109.47436 * 59.99759 * 10 9 6 12 12 H 1.08998 * 109.47084 * 59.99476 * 11 10 9 13 13 C 1.50692 * 109.47271 * 180.02562 * 11 10 9 14 14 H 1.08002 * 119.99949 * 120.00429 * 13 11 10 15 15 C 1.37877 * 120.00063 * 300.00192 * 13 11 10 16 16 N 1.31516 * 120.00009 * 359.97438 * 15 13 11 17 17 Si 1.86802 * 120.00165 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47259 * 59.99519 * 17 15 13 19 19 H 1.48494 * 109.47245 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46788 * 299.99657 * 17 15 13 21 21 H 1.08998 * 109.47019 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.47412 * 300.00094 * 1 2 3 23 23 H 1.09000 * 109.47080 * 60.00385 * 1 2 3 24 24 H 1.08993 * 109.46963 * 300.00124 * 5 3 2 25 25 H 1.09001 * 109.47226 * 179.97438 * 5 3 2 26 26 H 1.08996 * 109.47848 * 59.99940 * 7 6 5 27 27 H 1.09010 * 109.47087 * 179.97438 * 7 6 5 28 28 H 1.09001 * 109.47266 * 299.99488 * 7 6 5 29 29 H 1.09008 * 109.46873 * 71.16061 * 8 6 5 30 30 H 1.08993 * 109.47565 * 191.16140 * 8 6 5 31 31 H 1.09007 * 109.47055 * 311.16420 * 8 6 5 32 32 H 1.09001 * 109.47243 * 59.99622 * 9 6 5 33 33 H 1.08998 * 109.47119 * 180.02562 * 9 6 5 34 34 H 1.08993 * 109.46999 * 179.97438 * 10 9 6 35 35 H 1.09001 * 109.46785 * 299.99816 * 10 9 6 36 36 H 0.96993 * 119.99753 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 1 1.3449 1.9993 -0.5139 5 6 2.2175 1.7715 1.4425 6 6 3.1514 0.7975 2.1638 7 6 3.3583 1.2632 3.6064 8 6 2.5291 -0.6002 2.1639 9 6 4.5001 0.7553 1.4426 10 6 4.2927 0.2893 0.0001 11 6 3.3589 1.2632 -0.7213 12 1 3.8022 2.2590 -0.7212 13 6 3.1542 0.8039 -2.1418 14 1 2.1615 0.5663 -2.4947 15 6 4.2341 0.6871 -2.9910 16 7 5.4428 0.9770 -2.5614 17 14 3.9802 0.1184 -4.7522 18 1 3.0741 1.0642 -5.4520 19 1 5.2889 0.0775 -5.4526 20 1 3.3756 -1.2380 -4.7520 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.2568 1.8016 1.9562 25 1 2.6613 2.7671 1.4424 26 1 2.3974 1.2930 4.1200 27 1 4.0233 0.5691 4.1205 28 1 3.8015 2.2591 3.6067 29 1 2.5631 -1.0131 1.1556 30 1 3.0881 -1.2468 2.8402 31 1 1.4928 -0.5366 2.4957 32 1 4.9434 1.7511 1.4425 33 1 5.1652 0.0611 1.9562 34 1 5.2534 0.2597 -0.5138 35 1 3.8494 -0.7065 0.0001 36 1 6.2024 0.8952 -3.1590 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259798011.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:53 Heat of formation + Delta-G solvation = -82.398971 kcal Electronic energy + Delta-G solvation = -15606.943576 eV Core-core repulsion = 13282.764812 eV Total energy + Delta-G solvation = -2324.178764 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.76580 -37.22530 -35.49346 -32.71477 -30.84827 -28.38590 -27.97016 -27.18722 -25.14331 -23.16542 -21.41945 -19.22797 -18.37268 -17.04869 -16.78799 -16.09844 -15.84272 -15.09637 -14.81940 -14.36945 -14.18361 -13.90457 -13.48851 -13.20154 -12.84051 -12.73622 -12.69381 -12.51365 -12.48098 -12.20248 -11.91117 -11.66522 -11.58935 -11.22287 -11.02608 -10.77041 -10.37449 -10.32525 -9.82107 -8.01808 -6.13189 1.40950 1.42609 1.49788 2.46411 3.18221 3.31799 3.94383 4.08336 4.11343 4.47895 4.57016 4.64349 4.67993 4.73380 4.82398 4.90644 4.94119 4.98047 5.00162 5.04039 5.10905 5.19311 5.21339 5.36084 5.43975 5.50716 5.53641 5.70284 5.80621 5.95363 6.06075 6.25067 6.45681 6.74742 6.95804 7.52109 9.01706 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.037117 B = 0.011298 C = 0.009547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.195033 B = 2477.626032 C = 2932.212399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.376 6.376 3 C 0.104 3.896 4 H 0.036 0.964 5 C -0.122 4.122 6 C -0.056 4.056 7 C -0.133 4.133 8 C -0.131 4.131 9 C -0.101 4.101 10 C -0.097 4.097 11 C 0.050 3.950 12 H 0.002 0.998 13 C -0.515 4.515 14 H 0.046 0.954 15 C 0.010 3.990 16 N -0.918 5.918 17 Si 0.948 3.052 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.275 1.275 21 H 0.090 0.910 22 H 0.048 0.952 23 H 0.028 0.972 24 H 0.071 0.929 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.068 0.932 30 H 0.041 0.959 31 H 0.051 0.949 32 H 0.041 0.959 33 H 0.051 0.949 34 H 0.050 0.950 35 H 0.035 0.965 36 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.833 -0.393 9.386 11.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.295 6.295 3 C 0.046 3.954 4 H 0.054 0.946 5 C -0.160 4.160 6 C -0.056 4.056 7 C -0.190 4.190 8 C -0.188 4.188 9 C -0.139 4.139 10 C -0.135 4.135 11 C 0.032 3.968 12 H 0.020 0.980 13 C -0.553 4.553 14 H 0.064 0.936 15 C -0.188 4.188 16 N -0.559 5.559 17 Si 0.774 3.226 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.201 1.201 21 H 0.108 0.892 22 H 0.066 0.934 23 H 0.047 0.953 24 H 0.089 0.911 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.053 0.947 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.544 -0.548 9.324 11.405 hybrid contribution 0.019 0.054 -1.320 1.321 sum -6.525 -0.494 8.005 10.339 Atomic orbital electron populations 1.22827 0.82269 1.02692 0.99501 1.88068 1.18935 1.27747 1.94731 1.22083 0.95110 0.83737 0.94452 0.94608 1.22059 0.99655 0.98585 0.95678 1.20412 0.94355 0.95923 0.94913 1.21829 1.01801 1.00863 0.94526 1.22001 0.99172 0.95367 1.02258 1.21591 0.96566 0.99627 0.96122 1.21338 1.00526 0.98145 0.93459 1.18696 0.90829 0.94283 0.93019 0.97993 1.21397 0.92995 1.43907 0.96984 0.93584 1.25669 0.95150 0.95950 1.01985 1.70016 0.98959 1.50392 1.36519 0.85776 0.77112 0.78875 0.80838 1.19798 1.21049 1.20089 0.89197 0.93386 0.95339 0.91066 0.92004 0.91800 0.92403 0.92909 0.91379 0.93986 0.92980 0.93985 0.93018 0.93174 0.94676 0.93303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.72 10.82 113.37 1.23 1.95 16 2 O -0.38 -15.01 5.72 -148.98 -0.85 -15.86 16 3 C 0.10 4.31 2.29 30.60 0.07 4.38 16 4 H 0.04 1.49 7.79 -2.39 -0.02 1.47 16 5 C -0.12 -4.16 4.55 30.60 0.14 -4.02 16 6 C -0.06 -1.85 0.77 -52.18 -0.04 -1.89 16 7 C -0.13 -3.46 8.45 71.98 0.61 -2.85 16 8 C -0.13 -4.29 7.12 71.98 0.51 -3.77 16 9 C -0.10 -4.01 4.73 30.60 0.14 -3.86 16 10 C -0.10 -4.75 4.64 30.59 0.14 -4.61 16 11 C 0.05 2.56 1.94 -11.54 -0.02 2.53 16 12 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 13 C -0.51 -29.12 8.22 25.60 0.21 -28.91 16 14 H 0.05 2.60 7.70 -2.91 -0.02 2.58 16 15 C 0.01 0.58 5.30 84.65 0.45 1.03 16 16 N -0.92 -54.40 11.32 21.45 0.24 -54.15 16 17 Si 0.95 45.08 29.54 68.60 2.03 47.10 16 18 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 19 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 20 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 21 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 22 H 0.05 1.24 7.87 -2.39 -0.02 1.22 16 23 H 0.03 0.88 8.08 -2.39 -0.02 0.86 16 24 H 0.07 2.07 7.87 -2.39 -0.02 2.06 16 25 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 28 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.07 2.66 3.79 -2.38 -0.01 2.65 16 30 H 0.04 1.24 8.10 -2.39 -0.02 1.22 16 31 H 0.05 1.52 8.09 -2.38 -0.02 1.50 16 32 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.05 2.81 6.07 -2.39 -0.01 2.79 16 35 H 0.03 1.77 5.95 -2.39 -0.01 1.76 16 36 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -61.27 271.49 5.88 -55.39 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: 1.02 Total: 7.55 kcal Atomic # 6 Polarization: -43.47 SS G_CDS: 3.44 Total: -40.03 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: 0.24 Total: -54.15 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -0.85 Total: -15.86 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Total: -61.27 5.88 -55.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259798011.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.006 kcal (2) G-P(sol) polarization free energy of solvation -61.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds