Wall clock time and date at job start Mon Mar 30 2020 03:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 113.99687 * 2 1 4 4 H 1.09007 * 109.47330 * 30.00662 * 3 2 1 5 5 C 1.53001 * 109.47749 * 270.00093 * 3 2 1 6 6 C 1.53004 * 109.47265 * 180.02562 * 5 3 2 7 7 C 1.52993 * 109.46948 * 300.00026 * 6 5 3 8 8 C 1.53000 * 109.46749 * 180.02562 * 6 5 3 9 9 C 1.53000 * 109.47047 * 60.00024 * 6 5 3 10 10 C 1.53001 * 109.47050 * 299.99700 * 9 6 5 11 11 C 1.52998 * 109.47001 * 60.00575 * 10 9 6 12 12 H 1.08996 * 109.47562 * 59.99710 * 11 10 9 13 13 C 1.50704 * 109.47014 * 179.97438 * 11 10 9 14 14 H 1.08001 * 119.99898 * 95.21085 * 13 11 10 15 15 C 1.37877 * 119.99970 * 275.20643 * 13 11 10 16 16 N 1.31513 * 119.99694 * 355.45247 * 15 13 11 17 17 Si 1.86793 * 120.00143 * 175.18184 * 15 13 11 18 18 H 1.48500 * 109.47265 * 89.99762 * 17 15 13 19 19 H 1.48497 * 109.47352 * 210.00203 * 17 15 13 20 20 H 1.48506 * 109.47143 * 329.99972 * 17 15 13 21 21 H 1.09001 * 109.46827 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47637 * 299.99700 * 1 2 3 23 23 H 1.09007 * 109.47077 * 59.99902 * 1 2 3 24 24 H 1.08996 * 109.47015 * 59.99736 * 5 3 2 25 25 H 1.08996 * 109.46867 * 300.00375 * 5 3 2 26 26 H 1.08998 * 109.47215 * 180.02562 * 7 6 5 27 27 H 1.09006 * 109.47377 * 300.00078 * 7 6 5 28 28 H 1.08998 * 109.47441 * 60.00113 * 7 6 5 29 29 H 1.09000 * 109.46970 * 299.99454 * 8 6 5 30 30 H 1.08997 * 109.47392 * 60.00182 * 8 6 5 31 31 H 1.09001 * 109.46448 * 179.97438 * 8 6 5 32 32 H 1.09004 * 109.46920 * 179.97438 * 9 6 5 33 33 H 1.08996 * 109.47171 * 59.99781 * 9 6 5 34 34 H 1.08996 * 109.47199 * 300.00063 * 10 9 6 35 35 H 1.08997 * 109.47018 * 179.97438 * 10 9 6 36 36 H 0.97000 * 120.00617 * 4.93189 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9994 0.5140 5 6 2.2176 1.7715 -1.4425 6 6 2.8404 3.1691 -1.4423 7 6 1.9071 4.1432 -0.7208 8 6 3.0472 3.6353 -2.8848 9 6 4.1892 3.1262 -0.7212 10 6 3.9817 2.6603 0.7212 11 6 3.3590 1.2627 0.7211 12 1 4.0239 0.5687 0.2072 13 6 3.1552 0.8035 2.1419 14 1 2.1987 0.9449 2.6232 15 6 4.1897 0.2027 2.8273 16 7 5.3252 -0.0507 2.2140 17 14 3.9813 -0.2444 4.6289 18 1 3.4389 -1.6226 4.7374 19 1 5.2982 -0.1755 5.3117 20 1 3.0408 0.7095 5.2701 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5137 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 1.2568 1.8016 -1.9563 25 1 2.8828 1.0777 -1.9563 26 1 2.3505 5.1389 -0.7211 27 1 0.9462 4.1737 -1.2345 28 1 1.7593 3.8113 0.3068 29 1 3.7120 2.9413 -3.3991 30 1 2.0862 3.6659 -3.3981 31 1 3.4905 4.6311 -2.8847 32 1 4.6331 4.1218 -0.7216 33 1 4.8541 2.4322 -1.2352 34 1 3.3168 3.3543 1.2352 35 1 4.9426 2.6293 1.2348 36 1 5.4610 0.2488 1.3015 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259798013.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:56 Heat of formation + Delta-G solvation = -78.963132 kcal Electronic energy + Delta-G solvation = -15387.848287 eV Core-core repulsion = 13063.818512 eV Total energy + Delta-G solvation = -2324.029775 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.22404 -36.29824 -33.79053 -30.86334 -29.33138 -27.05725 -26.43745 -25.81768 -23.25140 -21.53194 -20.19933 -17.92558 -16.76893 -15.75268 -14.73290 -14.55349 -13.90381 -13.85932 -13.65123 -13.29371 -12.95391 -12.51012 -12.09157 -11.69641 -11.45445 -11.32872 -11.17717 -11.01922 -10.81083 -10.69596 -10.24674 -10.10544 -10.02966 -9.97748 -9.64517 -9.07673 -8.69966 -8.28778 -8.10069 -6.21918 -3.89647 3.49574 3.52846 3.68140 4.59189 4.62697 5.14589 5.24449 5.26700 5.49297 5.68924 5.77692 5.82954 5.88243 5.93047 6.02287 6.05798 6.12563 6.14118 6.16392 6.19434 6.31684 6.35873 6.41406 6.62125 6.67540 6.78136 6.80061 7.01217 7.18185 7.43642 7.60299 8.21127 8.36235 8.56718 9.01811 9.79908 11.17451 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.032227 B = 0.011118 C = 0.009302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.631168 B = 2517.944141 C = 3009.521527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.368 6.368 3 C 0.104 3.896 4 H 0.046 0.954 5 C -0.129 4.129 6 C -0.060 4.060 7 C -0.144 4.144 8 C -0.138 4.138 9 C -0.111 4.111 10 C -0.106 4.106 11 C 0.035 3.965 12 H 0.037 0.963 13 C -0.576 4.576 14 H 0.044 0.956 15 C 0.019 3.981 16 N -0.917 5.917 17 Si 1.067 2.933 18 H -0.289 1.289 19 H -0.286 1.286 20 H -0.290 1.290 21 H 0.073 0.927 22 H 0.033 0.967 23 H 0.025 0.975 24 H 0.047 0.953 25 H 0.062 0.938 26 H 0.049 0.951 27 H 0.045 0.955 28 H 0.066 0.934 29 H 0.052 0.948 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.047 0.953 33 H 0.055 0.945 34 H 0.049 0.951 35 H 0.056 0.944 36 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.496 6.304 -6.675 11.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.286 6.286 3 C 0.047 3.953 4 H 0.064 0.936 5 C -0.167 4.167 6 C -0.060 4.060 7 C -0.201 4.201 8 C -0.195 4.195 9 C -0.149 4.149 10 C -0.144 4.144 11 C 0.016 3.984 12 H 0.055 0.945 13 C -0.615 4.615 14 H 0.062 0.938 15 C -0.184 4.184 16 N -0.554 5.554 17 Si 0.896 3.104 18 H -0.216 1.216 19 H -0.212 1.212 20 H -0.217 1.217 21 H 0.092 0.908 22 H 0.052 0.948 23 H 0.044 0.956 24 H 0.066 0.934 25 H 0.081 0.919 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.085 0.915 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.625 5.400 -5.389 9.478 hybrid contribution -1.069 0.971 -1.368 1.989 sum -6.695 6.370 -6.757 11.448 Atomic orbital electron populations 1.22614 0.83720 1.01320 0.98606 1.88008 1.17175 1.28761 1.94662 1.22279 0.97311 0.82951 0.92768 0.93556 1.22131 0.99672 0.95856 0.99028 1.20445 0.96155 0.94755 0.94616 1.21970 0.98334 0.98464 1.01335 1.21862 1.00926 1.00631 0.96124 1.21714 0.95213 0.99908 0.98052 1.21748 1.00848 0.98800 0.93042 1.18916 0.90478 0.92769 0.96248 0.94507 1.21787 0.99522 1.42803 0.97345 0.93769 1.25697 0.93275 0.94149 1.05326 1.70742 1.26207 1.43840 1.14637 0.83580 0.75457 0.76226 0.75106 1.21614 1.21199 1.21663 0.90825 0.94809 0.95636 0.93432 0.91886 0.93188 0.93591 0.91498 0.92910 0.93292 0.93048 0.93376 0.92649 0.93250 0.92482 0.91902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.82 101.05 1.09 1.70 16 2 O -0.37 -8.38 9.97 -35.23 -0.35 -8.73 16 3 C 0.10 2.27 1.76 -26.73 -0.05 2.22 16 4 H 0.05 0.99 6.08 -51.92 -0.32 0.68 16 5 C -0.13 -2.36 4.35 -26.73 -0.12 -2.47 16 6 C -0.06 -0.97 0.77 -154.51 -0.12 -1.09 16 7 C -0.14 -2.18 7.78 37.15 0.29 -1.90 16 8 C -0.14 -1.87 8.47 37.16 0.31 -1.56 16 9 C -0.11 -2.03 4.73 -26.73 -0.13 -2.15 16 10 C -0.11 -2.35 4.91 -26.73 -0.13 -2.48 16 11 C 0.03 0.87 1.57 -91.77 -0.14 0.73 16 12 H 0.04 1.03 6.68 -51.93 -0.35 0.69 16 13 C -0.58 -16.32 7.96 -34.44 -0.27 -16.60 16 14 H 0.04 1.27 7.81 -52.49 -0.41 0.86 16 15 C 0.02 0.55 5.45 -17.82 -0.10 0.45 16 16 N -0.92 -28.09 13.63 55.43 0.76 -27.33 16 17 Si 1.07 25.90 29.91 -169.99 -5.08 20.82 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 21 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 22 H 0.03 0.57 8.08 -51.93 -0.42 0.15 16 23 H 0.03 0.39 7.87 -51.92 -0.41 -0.02 16 24 H 0.05 0.79 7.87 -51.93 -0.41 0.38 16 25 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.07 1.13 4.81 -51.93 -0.25 0.88 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.05 1.06 6.43 -51.93 -0.33 0.73 16 35 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.27 8.21 6.66 -40.82 -0.27 7.94 16 LS Contribution 277.09 15.07 4.18 4.18 Total: -1.00 -30.57 277.09 -6.05 -36.62 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -6.19 Total: -2.40 kcal Atomic # 6 Polarization: -23.79 SS G_CDS: 0.64 Total: -23.15 kcal Atomic # 7 Polarization: -28.09 SS G_CDS: 0.76 Total: -27.33 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: -0.35 Total: -8.73 kcal Atomic # 14 Polarization: 25.90 SS G_CDS: -5.08 Total: 20.82 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -30.57 -6.05 -36.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259798013.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.342 kcal (2) G-P(sol) polarization free energy of solvation -30.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds