Wall clock time and date at job start Mon Mar 30 2020 03:08:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.42897 * 113.99687 * 2 1
4 4 H 1.09007 * 109.47330 * 30.00662 * 3 2 1
5 5 C 1.53001 * 109.47749 * 270.00093 * 3 2 1
6 6 C 1.53004 * 109.47265 * 180.02562 * 5 3 2
7 7 C 1.52993 * 109.46948 * 300.00026 * 6 5 3
8 8 C 1.53000 * 109.46749 * 180.02562 * 6 5 3
9 9 C 1.53000 * 109.47047 * 60.00024 * 6 5 3
10 10 C 1.53001 * 109.47050 * 299.99700 * 9 6 5
11 11 C 1.52998 * 109.47001 * 60.00575 * 10 9 6
12 12 H 1.08996 * 109.47562 * 59.99710 * 11 10 9
13 13 C 1.50704 * 109.47014 * 179.97438 * 11 10 9
14 14 H 1.08001 * 119.99898 * 95.21085 * 13 11 10
15 15 C 1.37877 * 119.99970 * 275.20643 * 13 11 10
16 16 N 1.31513 * 119.99694 * 355.45247 * 15 13 11
17 17 Si 1.86793 * 120.00143 * 175.18184 * 15 13 11
18 18 H 1.48500 * 109.47265 * 89.99762 * 17 15 13
19 19 H 1.48497 * 109.47352 * 210.00203 * 17 15 13
20 20 H 1.48506 * 109.47143 * 329.99972 * 17 15 13
21 21 H 1.09001 * 109.46827 * 179.97438 * 1 2 3
22 22 H 1.08994 * 109.47637 * 299.99700 * 1 2 3
23 23 H 1.09007 * 109.47077 * 59.99902 * 1 2 3
24 24 H 1.08996 * 109.47015 * 59.99736 * 5 3 2
25 25 H 1.08996 * 109.46867 * 300.00375 * 5 3 2
26 26 H 1.08998 * 109.47215 * 180.02562 * 7 6 5
27 27 H 1.09006 * 109.47377 * 300.00078 * 7 6 5
28 28 H 1.08998 * 109.47441 * 60.00113 * 7 6 5
29 29 H 1.09000 * 109.46970 * 299.99454 * 8 6 5
30 30 H 1.08997 * 109.47392 * 60.00182 * 8 6 5
31 31 H 1.09001 * 109.46448 * 179.97438 * 8 6 5
32 32 H 1.09004 * 109.46920 * 179.97438 * 9 6 5
33 33 H 1.08996 * 109.47171 * 59.99781 * 9 6 5
34 34 H 1.08996 * 109.47199 * 300.00063 * 10 9 6
35 35 H 1.08997 * 109.47018 * 179.97438 * 10 9 6
36 36 H 0.97000 * 120.00617 * 4.93189 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0101 1.3055 0.0000
4 1 1.3449 1.9994 0.5140
5 6 2.2176 1.7715 -1.4425
6 6 2.8404 3.1691 -1.4423
7 6 1.9071 4.1432 -0.7208
8 6 3.0472 3.6353 -2.8848
9 6 4.1892 3.1262 -0.7212
10 6 3.9817 2.6603 0.7212
11 6 3.3590 1.2627 0.7211
12 1 4.0239 0.5687 0.2072
13 6 3.1552 0.8035 2.1419
14 1 2.1987 0.9449 2.6232
15 6 4.1897 0.2027 2.8273
16 7 5.3252 -0.0507 2.2140
17 14 3.9813 -0.2444 4.6289
18 1 3.4389 -1.6226 4.7374
19 1 5.2982 -0.1755 5.3117
20 1 3.0408 0.7095 5.2701
21 1 -0.3633 -1.0277 -0.0005
22 1 -0.3634 0.5137 0.8899
23 1 -0.3633 0.5139 -0.8900
24 1 1.2568 1.8016 -1.9563
25 1 2.8828 1.0777 -1.9563
26 1 2.3505 5.1389 -0.7211
27 1 0.9462 4.1737 -1.2345
28 1 1.7593 3.8113 0.3068
29 1 3.7120 2.9413 -3.3991
30 1 2.0862 3.6659 -3.3981
31 1 3.4905 4.6311 -2.8847
32 1 4.6331 4.1218 -0.7216
33 1 4.8541 2.4322 -1.2352
34 1 3.3168 3.3543 1.2352
35 1 4.9426 2.6293 1.2348
36 1 5.4610 0.2488 1.3015
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000259798013.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:08:56
Heat of formation + Delta-G solvation = -78.963132 kcal
Electronic energy + Delta-G solvation = -15387.848287 eV
Core-core repulsion = 13063.818512 eV
Total energy + Delta-G solvation = -2324.029775 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 212.152 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-39.22404 -36.29824 -33.79053 -30.86334 -29.33138 -27.05725 -26.43745 -25.81768
-23.25140 -21.53194 -20.19933 -17.92558 -16.76893 -15.75268 -14.73290 -14.55349
-13.90381 -13.85932 -13.65123 -13.29371 -12.95391 -12.51012 -12.09157 -11.69641
-11.45445 -11.32872 -11.17717 -11.01922 -10.81083 -10.69596 -10.24674 -10.10544
-10.02966 -9.97748 -9.64517 -9.07673 -8.69966 -8.28778 -8.10069 -6.21918
-3.89647 3.49574 3.52846 3.68140 4.59189 4.62697 5.14589 5.24449
5.26700 5.49297 5.68924 5.77692 5.82954 5.88243 5.93047 6.02287
6.05798 6.12563 6.14118 6.16392 6.19434 6.31684 6.35873 6.41406
6.62125 6.67540 6.78136 6.80061 7.01217 7.18185 7.43642 7.60299
8.21127 8.36235 8.56718 9.01811 9.79908 11.17451
Molecular weight = 212.15amu
Principal moments of inertia in cm(-1)
A = 0.032227 B = 0.011118 C = 0.009302
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 868.631168 B = 2517.944141 C = 3009.521527
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.035 3.965
2 O -0.368 6.368
3 C 0.104 3.896
4 H 0.046 0.954
5 C -0.129 4.129
6 C -0.060 4.060
7 C -0.144 4.144
8 C -0.138 4.138
9 C -0.111 4.111
10 C -0.106 4.106
11 C 0.035 3.965
12 H 0.037 0.963
13 C -0.576 4.576
14 H 0.044 0.956
15 C 0.019 3.981
16 N -0.917 5.917
17 Si 1.067 2.933
18 H -0.289 1.289
19 H -0.286 1.286
20 H -0.290 1.290
21 H 0.073 0.927
22 H 0.033 0.967
23 H 0.025 0.975
24 H 0.047 0.953
25 H 0.062 0.938
26 H 0.049 0.951
27 H 0.045 0.955
28 H 0.066 0.934
29 H 0.052 0.948
30 H 0.048 0.952
31 H 0.050 0.950
32 H 0.047 0.953
33 H 0.055 0.945
34 H 0.049 0.951
35 H 0.056 0.944
36 H 0.270 0.730
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.496 6.304 -6.675 11.246
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.063 4.063
2 O -0.286 6.286
3 C 0.047 3.953
4 H 0.064 0.936
5 C -0.167 4.167
6 C -0.060 4.060
7 C -0.201 4.201
8 C -0.195 4.195
9 C -0.149 4.149
10 C -0.144 4.144
11 C 0.016 3.984
12 H 0.055 0.945
13 C -0.615 4.615
14 H 0.062 0.938
15 C -0.184 4.184
16 N -0.554 5.554
17 Si 0.896 3.104
18 H -0.216 1.216
19 H -0.212 1.212
20 H -0.217 1.217
21 H 0.092 0.908
22 H 0.052 0.948
23 H 0.044 0.956
24 H 0.066 0.934
25 H 0.081 0.919
26 H 0.068 0.932
27 H 0.064 0.936
28 H 0.085 0.915
29 H 0.071 0.929
30 H 0.067 0.933
31 H 0.070 0.930
32 H 0.066 0.934
33 H 0.074 0.926
34 H 0.067 0.933
35 H 0.075 0.925
36 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges -5.625 5.400 -5.389 9.478
hybrid contribution -1.069 0.971 -1.368 1.989
sum -6.695 6.370 -6.757 11.448
Atomic orbital electron populations
1.22614 0.83720 1.01320 0.98606 1.88008 1.17175 1.28761 1.94662
1.22279 0.97311 0.82951 0.92768 0.93556 1.22131 0.99672 0.95856
0.99028 1.20445 0.96155 0.94755 0.94616 1.21970 0.98334 0.98464
1.01335 1.21862 1.00926 1.00631 0.96124 1.21714 0.95213 0.99908
0.98052 1.21748 1.00848 0.98800 0.93042 1.18916 0.90478 0.92769
0.96248 0.94507 1.21787 0.99522 1.42803 0.97345 0.93769 1.25697
0.93275 0.94149 1.05326 1.70742 1.26207 1.43840 1.14637 0.83580
0.75457 0.76226 0.75106 1.21614 1.21199 1.21663 0.90825 0.94809
0.95636 0.93432 0.91886 0.93188 0.93591 0.91498 0.92910 0.93292
0.93048 0.93376 0.92649 0.93250 0.92482 0.91902
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.61 10.82 101.05 1.09 1.70 16
2 O -0.37 -8.38 9.97 -35.23 -0.35 -8.73 16
3 C 0.10 2.27 1.76 -26.73 -0.05 2.22 16
4 H 0.05 0.99 6.08 -51.92 -0.32 0.68 16
5 C -0.13 -2.36 4.35 -26.73 -0.12 -2.47 16
6 C -0.06 -0.97 0.77 -154.51 -0.12 -1.09 16
7 C -0.14 -2.18 7.78 37.15 0.29 -1.90 16
8 C -0.14 -1.87 8.47 37.16 0.31 -1.56 16
9 C -0.11 -2.03 4.73 -26.73 -0.13 -2.15 16
10 C -0.11 -2.35 4.91 -26.73 -0.13 -2.48 16
11 C 0.03 0.87 1.57 -91.77 -0.14 0.73 16
12 H 0.04 1.03 6.68 -51.93 -0.35 0.69 16
13 C -0.58 -16.32 7.96 -34.44 -0.27 -16.60 16
14 H 0.04 1.27 7.81 -52.49 -0.41 0.86 16
15 C 0.02 0.55 5.45 -17.82 -0.10 0.45 16
16 N -0.92 -28.09 13.63 55.43 0.76 -27.33 16
17 Si 1.07 25.90 29.91 -169.99 -5.08 20.82 16
18 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16
19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16
20 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16
21 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16
22 H 0.03 0.57 8.08 -51.93 -0.42 0.15 16
23 H 0.03 0.39 7.87 -51.92 -0.41 -0.02 16
24 H 0.05 0.79 7.87 -51.93 -0.41 0.38 16
25 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16
26 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16
27 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16
28 H 0.07 1.13 4.81 -51.93 -0.25 0.88 16
29 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16
30 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16
31 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16
32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16
33 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16
34 H 0.05 1.06 6.43 -51.93 -0.33 0.73 16
35 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16
36 H 0.27 8.21 6.66 -40.82 -0.27 7.94 16
LS Contribution 277.09 15.07 4.18 4.18
Total: -1.00 -30.57 277.09 -6.05 -36.62
By element:
Atomic # 1 Polarization: 3.79 SS G_CDS: -6.19 Total: -2.40 kcal
Atomic # 6 Polarization: -23.79 SS G_CDS: 0.64 Total: -23.15 kcal
Atomic # 7 Polarization: -28.09 SS G_CDS: 0.76 Total: -27.33 kcal
Atomic # 8 Polarization: -8.38 SS G_CDS: -0.35 Total: -8.73 kcal
Atomic # 14 Polarization: 25.90 SS G_CDS: -5.08 Total: 20.82 kcal
Total LS contribution 4.18 Total: 4.18 kcal
Total: -30.57 -6.05 -36.62 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259798013.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -42.342 kcal
(2) G-P(sol) polarization free energy of solvation -30.571 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.914 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.050 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.621 kcal
(6) G-S(sol) free energy of system = (1) + (5) -78.963 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds