Wall clock time and date at job start Mon Mar 30 2020 03:08:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.42897 * 113.99687 * 2 1
4 4 H 1.09007 * 109.47330 * 30.00662 * 3 2 1
5 5 C 1.53001 * 109.47749 * 270.00093 * 3 2 1
6 6 C 1.53004 * 109.47265 * 180.02562 * 5 3 2
7 7 C 1.52993 * 109.46948 * 300.00026 * 6 5 3
8 8 C 1.53000 * 109.46749 * 180.02562 * 6 5 3
9 9 C 1.53000 * 109.47047 * 60.00024 * 6 5 3
10 10 C 1.53001 * 109.47050 * 299.99700 * 9 6 5
11 11 C 1.52998 * 109.47001 * 60.00575 * 10 9 6
12 12 H 1.08996 * 109.47562 * 59.99710 * 11 10 9
13 13 C 1.50704 * 109.47014 * 179.97438 * 11 10 9
14 14 H 1.08001 * 119.99898 * 95.21085 * 13 11 10
15 15 C 1.37877 * 119.99970 * 275.20643 * 13 11 10
16 16 N 1.31513 * 119.99694 * 355.45247 * 15 13 11
17 17 Si 1.86793 * 120.00143 * 175.18184 * 15 13 11
18 18 H 1.48500 * 109.47265 * 89.99762 * 17 15 13
19 19 H 1.48497 * 109.47352 * 210.00203 * 17 15 13
20 20 H 1.48506 * 109.47143 * 329.99972 * 17 15 13
21 21 H 1.09001 * 109.46827 * 179.97438 * 1 2 3
22 22 H 1.08994 * 109.47637 * 299.99700 * 1 2 3
23 23 H 1.09007 * 109.47077 * 59.99902 * 1 2 3
24 24 H 1.08996 * 109.47015 * 59.99736 * 5 3 2
25 25 H 1.08996 * 109.46867 * 300.00375 * 5 3 2
26 26 H 1.08998 * 109.47215 * 180.02562 * 7 6 5
27 27 H 1.09006 * 109.47377 * 300.00078 * 7 6 5
28 28 H 1.08998 * 109.47441 * 60.00113 * 7 6 5
29 29 H 1.09000 * 109.46970 * 299.99454 * 8 6 5
30 30 H 1.08997 * 109.47392 * 60.00182 * 8 6 5
31 31 H 1.09001 * 109.46448 * 179.97438 * 8 6 5
32 32 H 1.09004 * 109.46920 * 179.97438 * 9 6 5
33 33 H 1.08996 * 109.47171 * 59.99781 * 9 6 5
34 34 H 1.08996 * 109.47199 * 300.00063 * 10 9 6
35 35 H 1.08997 * 109.47018 * 179.97438 * 10 9 6
36 36 H 0.97000 * 120.00617 * 4.93189 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0101 1.3055 0.0000
4 1 1.3449 1.9994 0.5140
5 6 2.2176 1.7715 -1.4425
6 6 2.8404 3.1691 -1.4423
7 6 1.9071 4.1432 -0.7208
8 6 3.0472 3.6353 -2.8848
9 6 4.1892 3.1262 -0.7212
10 6 3.9817 2.6603 0.7212
11 6 3.3590 1.2627 0.7211
12 1 4.0239 0.5687 0.2072
13 6 3.1552 0.8035 2.1419
14 1 2.1987 0.9449 2.6232
15 6 4.1897 0.2027 2.8273
16 7 5.3252 -0.0507 2.2140
17 14 3.9813 -0.2444 4.6289
18 1 3.4389 -1.6226 4.7374
19 1 5.2982 -0.1755 5.3117
20 1 3.0408 0.7095 5.2701
21 1 -0.3633 -1.0277 -0.0005
22 1 -0.3634 0.5137 0.8899
23 1 -0.3633 0.5139 -0.8900
24 1 1.2568 1.8016 -1.9563
25 1 2.8828 1.0777 -1.9563
26 1 2.3505 5.1389 -0.7211
27 1 0.9462 4.1737 -1.2345
28 1 1.7593 3.8113 0.3068
29 1 3.7120 2.9413 -3.3991
30 1 2.0862 3.6659 -3.3981
31 1 3.4905 4.6311 -2.8847
32 1 4.6331 4.1218 -0.7216
33 1 4.8541 2.4322 -1.2352
34 1 3.3168 3.3543 1.2352
35 1 4.9426 2.6293 1.2348
36 1 5.4610 0.2488 1.3015
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000259798013.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:08:56
Heat of formation + Delta-G solvation = -97.481491 kcal
Electronic energy + Delta-G solvation = -15388.651304 eV
Core-core repulsion = 13063.818512 eV
Total energy + Delta-G solvation = -2324.832791 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 212.152 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-40.79399 -37.85797 -35.76216 -32.71715 -30.91910 -28.21152 -28.11762 -27.31867
-25.19982 -23.18195 -21.95060 -19.41600 -18.87081 -17.34409 -16.26949 -16.17507
-15.66702 -15.44662 -15.25870 -14.86333 -14.39401 -14.11506 -13.53001 -13.19971
-12.94635 -12.89022 -12.72360 -12.60010 -12.45125 -12.29181 -11.95747 -11.82856
-11.62788 -11.50091 -11.17985 -10.82432 -10.58290 -10.43612 -10.00173 -8.53618
-6.21005 1.50592 1.59986 1.76753 2.59722 3.04937 3.28385 3.76945
3.90233 3.97452 4.20101 4.38061 4.49647 4.54271 4.56391 4.59281
4.66430 4.69877 4.76610 4.80495 4.87619 4.94047 5.03263 5.09578
5.17382 5.20217 5.22468 5.29284 5.50656 5.52856 5.59167 5.70489
6.15976 6.28989 6.58058 6.75903 7.56297 8.85787
Molecular weight = 212.15amu
Principal moments of inertia in cm(-1)
A = 0.032227 B = 0.011118 C = 0.009302
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 868.631168 B = 2517.944141 C = 3009.521527
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.029 3.971
2 O -0.409 6.409
3 C 0.109 3.891
4 H 0.050 0.950
5 C -0.122 4.122
6 C -0.058 4.058
7 C -0.141 4.141
8 C -0.132 4.132
9 C -0.106 4.106
10 C -0.096 4.096
11 C 0.029 3.971
12 H -0.005 1.005
13 C -0.584 4.584
14 H 0.036 0.964
15 C -0.036 4.036
16 N -0.944 5.944
17 Si 1.111 2.889
18 H -0.280 1.280
19 H -0.284 1.284
20 H -0.270 1.270
21 H 0.090 0.910
22 H 0.034 0.966
23 H 0.052 0.948
24 H 0.072 0.928
25 H 0.046 0.954
26 H 0.067 0.933
27 H 0.066 0.934
28 H 0.043 0.957
29 H 0.049 0.951
30 H 0.067 0.933
31 H 0.068 0.932
32 H 0.072 0.928
33 H 0.042 0.958
34 H 0.055 0.945
35 H 0.023 0.977
36 H 0.256 0.744
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.143 7.732 -7.483 13.494
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 O -0.328 6.328
3 C 0.051 3.949
4 H 0.068 0.932
5 C -0.159 4.159
6 C -0.058 4.058
7 C -0.198 4.198
8 C -0.189 4.189
9 C -0.143 4.143
10 C -0.135 4.135
11 C 0.010 3.990
12 H 0.013 0.987
13 C -0.622 4.622
14 H 0.055 0.945
15 C -0.233 4.233
16 N -0.583 5.583
17 Si 0.934 3.066
18 H -0.206 1.206
19 H -0.209 1.209
20 H -0.195 1.195
21 H 0.109 0.891
22 H 0.052 0.948
23 H 0.071 0.929
24 H 0.091 0.909
25 H 0.065 0.935
26 H 0.086 0.914
27 H 0.085 0.915
28 H 0.062 0.938
29 H 0.068 0.932
30 H 0.086 0.914
31 H 0.087 0.913
32 H 0.091 0.909
33 H 0.061 0.939
34 H 0.073 0.927
35 H 0.042 0.958
36 H 0.066 0.934
Dipole moment (debyes) X Y Z Total
from point charges -7.296 6.840 -6.214 11.775
hybrid contribution -0.611 0.499 -1.126 1.375
sum -7.907 7.339 -7.340 13.049
Atomic orbital electron populations
1.22848 0.80976 1.03007 0.99909 1.87940 1.20320 1.29527 1.95028
1.22145 0.95098 0.82913 0.94714 0.93239 1.22059 1.00789 0.96700
0.96394 1.20463 0.94689 0.93994 0.96630 1.21938 0.99222 0.98774
0.99896 1.21802 1.02147 1.01333 0.93665 1.21656 0.96909 1.00607
0.95158 1.21526 0.98796 0.97293 0.95837 1.18931 0.92177 0.93235
0.94661 0.98662 1.22155 0.98863 1.42175 0.99036 0.94548 1.27108
0.92877 0.94210 1.09063 1.70862 1.27402 1.45747 1.14272 0.83020
0.75987 0.76885 0.70726 1.20570 1.20917 1.19502 0.89109 0.94758
0.92916 0.90924 0.93496 0.91378 0.91470 0.93821 0.93174 0.91426
0.91333 0.90946 0.93888 0.92660 0.95814 0.93358
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.96 10.82 113.37 1.23 2.19 16
2 O -0.41 -18.63 9.97 -148.98 -1.49 -20.12 16
3 C 0.11 4.70 1.76 30.60 0.05 4.75 16
4 H 0.05 2.08 6.08 -2.38 -0.01 2.07 16
5 C -0.12 -4.25 4.35 30.60 0.13 -4.12 16
6 C -0.06 -1.73 0.77 -52.18 -0.04 -1.77 16
7 C -0.14 -3.81 7.78 71.98 0.56 -3.25 16
8 C -0.13 -3.08 8.47 71.98 0.61 -2.47 16
9 C -0.11 -3.77 4.73 30.59 0.14 -3.62 16
10 C -0.10 -4.36 4.91 30.59 0.15 -4.21 16
11 C 0.03 1.49 1.57 -11.54 -0.02 1.47 16
12 H 0.00 -0.29 6.68 -2.39 -0.02 -0.30 16
13 C -0.58 -34.00 7.96 25.60 0.20 -33.80 16
14 H 0.04 2.12 7.81 -2.91 -0.02 2.10 16
15 C -0.04 -2.13 5.45 84.65 0.46 -1.67 16
16 N -0.94 -60.10 13.63 21.45 0.29 -59.81 16
17 Si 1.11 52.68 29.91 68.60 2.05 54.73 16
18 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16
19 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16
20 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16
21 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16
22 H 0.03 1.11 8.08 -2.39 -0.02 1.09 16
23 H 0.05 1.45 7.87 -2.38 -0.02 1.43 16
24 H 0.07 2.18 7.87 -2.39 -0.02 2.16 16
25 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16
26 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16
27 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16
28 H 0.04 1.38 4.81 -2.39 -0.01 1.36 16
29 H 0.05 1.19 8.14 -2.39 -0.02 1.18 16
30 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16
31 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16
32 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16
33 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16
34 H 0.05 2.39 6.43 -2.39 -0.02 2.38 16
35 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16
36 H 0.26 16.53 6.66 -92.71 -0.62 15.91 16
Total: -1.00 -68.34 277.09 5.52 -62.82
By element:
Atomic # 1 Polarization: 7.69 SS G_CDS: 1.17 Total: 8.87 kcal
Atomic # 6 Polarization: -49.98 SS G_CDS: 3.49 Total: -46.50 kcal
Atomic # 7 Polarization: -60.10 SS G_CDS: 0.29 Total: -59.81 kcal
Atomic # 8 Polarization: -18.63 SS G_CDS: -1.49 Total: -20.12 kcal
Atomic # 14 Polarization: 52.68 SS G_CDS: 2.05 Total: 54.73 kcal
Total: -68.34 5.52 -62.82 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259798013.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -34.660 kcal
(2) G-P(sol) polarization free energy of solvation -68.338 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.998 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.516 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.821 kcal
(6) G-S(sol) free energy of system = (1) + (5) -97.481 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds