Wall clock time and date at job start Mon Mar 30 2020 03:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 113.99687 * 2 1 4 4 H 1.09007 * 109.47330 * 30.00662 * 3 2 1 5 5 C 1.53001 * 109.47749 * 270.00093 * 3 2 1 6 6 C 1.53004 * 109.47265 * 180.02562 * 5 3 2 7 7 C 1.52993 * 109.46948 * 300.00026 * 6 5 3 8 8 C 1.53000 * 109.46749 * 180.02562 * 6 5 3 9 9 C 1.53000 * 109.47047 * 60.00024 * 6 5 3 10 10 C 1.53001 * 109.47050 * 299.99700 * 9 6 5 11 11 C 1.52998 * 109.47001 * 60.00575 * 10 9 6 12 12 H 1.08996 * 109.47562 * 59.99710 * 11 10 9 13 13 C 1.50704 * 109.47014 * 179.97438 * 11 10 9 14 14 H 1.08001 * 119.99898 * 95.21085 * 13 11 10 15 15 C 1.37877 * 119.99970 * 275.20643 * 13 11 10 16 16 N 1.31513 * 119.99694 * 355.45247 * 15 13 11 17 17 Si 1.86793 * 120.00143 * 175.18184 * 15 13 11 18 18 H 1.48500 * 109.47265 * 89.99762 * 17 15 13 19 19 H 1.48497 * 109.47352 * 210.00203 * 17 15 13 20 20 H 1.48506 * 109.47143 * 329.99972 * 17 15 13 21 21 H 1.09001 * 109.46827 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47637 * 299.99700 * 1 2 3 23 23 H 1.09007 * 109.47077 * 59.99902 * 1 2 3 24 24 H 1.08996 * 109.47015 * 59.99736 * 5 3 2 25 25 H 1.08996 * 109.46867 * 300.00375 * 5 3 2 26 26 H 1.08998 * 109.47215 * 180.02562 * 7 6 5 27 27 H 1.09006 * 109.47377 * 300.00078 * 7 6 5 28 28 H 1.08998 * 109.47441 * 60.00113 * 7 6 5 29 29 H 1.09000 * 109.46970 * 299.99454 * 8 6 5 30 30 H 1.08997 * 109.47392 * 60.00182 * 8 6 5 31 31 H 1.09001 * 109.46448 * 179.97438 * 8 6 5 32 32 H 1.09004 * 109.46920 * 179.97438 * 9 6 5 33 33 H 1.08996 * 109.47171 * 59.99781 * 9 6 5 34 34 H 1.08996 * 109.47199 * 300.00063 * 10 9 6 35 35 H 1.08997 * 109.47018 * 179.97438 * 10 9 6 36 36 H 0.97000 * 120.00617 * 4.93189 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9994 0.5140 5 6 2.2176 1.7715 -1.4425 6 6 2.8404 3.1691 -1.4423 7 6 1.9071 4.1432 -0.7208 8 6 3.0472 3.6353 -2.8848 9 6 4.1892 3.1262 -0.7212 10 6 3.9817 2.6603 0.7212 11 6 3.3590 1.2627 0.7211 12 1 4.0239 0.5687 0.2072 13 6 3.1552 0.8035 2.1419 14 1 2.1987 0.9449 2.6232 15 6 4.1897 0.2027 2.8273 16 7 5.3252 -0.0507 2.2140 17 14 3.9813 -0.2444 4.6289 18 1 3.4389 -1.6226 4.7374 19 1 5.2982 -0.1755 5.3117 20 1 3.0408 0.7095 5.2701 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5137 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 1.2568 1.8016 -1.9563 25 1 2.8828 1.0777 -1.9563 26 1 2.3505 5.1389 -0.7211 27 1 0.9462 4.1737 -1.2345 28 1 1.7593 3.8113 0.3068 29 1 3.7120 2.9413 -3.3991 30 1 2.0862 3.6659 -3.3981 31 1 3.4905 4.6311 -2.8847 32 1 4.6331 4.1218 -0.7216 33 1 4.8541 2.4322 -1.2352 34 1 3.3168 3.3543 1.2352 35 1 4.9426 2.6293 1.2348 36 1 5.4610 0.2488 1.3015 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259798013.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:56 Heat of formation + Delta-G solvation = -97.481491 kcal Electronic energy + Delta-G solvation = -15388.651304 eV Core-core repulsion = 13063.818512 eV Total energy + Delta-G solvation = -2324.832791 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.79399 -37.85797 -35.76216 -32.71715 -30.91910 -28.21152 -28.11762 -27.31867 -25.19982 -23.18195 -21.95060 -19.41600 -18.87081 -17.34409 -16.26949 -16.17507 -15.66702 -15.44662 -15.25870 -14.86333 -14.39401 -14.11506 -13.53001 -13.19971 -12.94635 -12.89022 -12.72360 -12.60010 -12.45125 -12.29181 -11.95747 -11.82856 -11.62788 -11.50091 -11.17985 -10.82432 -10.58290 -10.43612 -10.00173 -8.53618 -6.21005 1.50592 1.59986 1.76753 2.59722 3.04937 3.28385 3.76945 3.90233 3.97452 4.20101 4.38061 4.49647 4.54271 4.56391 4.59281 4.66430 4.69877 4.76610 4.80495 4.87619 4.94047 5.03263 5.09578 5.17382 5.20217 5.22468 5.29284 5.50656 5.52856 5.59167 5.70489 6.15976 6.28989 6.58058 6.75903 7.56297 8.85787 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.032227 B = 0.011118 C = 0.009302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.631168 B = 2517.944141 C = 3009.521527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.409 6.409 3 C 0.109 3.891 4 H 0.050 0.950 5 C -0.122 4.122 6 C -0.058 4.058 7 C -0.141 4.141 8 C -0.132 4.132 9 C -0.106 4.106 10 C -0.096 4.096 11 C 0.029 3.971 12 H -0.005 1.005 13 C -0.584 4.584 14 H 0.036 0.964 15 C -0.036 4.036 16 N -0.944 5.944 17 Si 1.111 2.889 18 H -0.280 1.280 19 H -0.284 1.284 20 H -0.270 1.270 21 H 0.090 0.910 22 H 0.034 0.966 23 H 0.052 0.948 24 H 0.072 0.928 25 H 0.046 0.954 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.043 0.957 29 H 0.049 0.951 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.042 0.958 34 H 0.055 0.945 35 H 0.023 0.977 36 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.143 7.732 -7.483 13.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.328 6.328 3 C 0.051 3.949 4 H 0.068 0.932 5 C -0.159 4.159 6 C -0.058 4.058 7 C -0.198 4.198 8 C -0.189 4.189 9 C -0.143 4.143 10 C -0.135 4.135 11 C 0.010 3.990 12 H 0.013 0.987 13 C -0.622 4.622 14 H 0.055 0.945 15 C -0.233 4.233 16 N -0.583 5.583 17 Si 0.934 3.066 18 H -0.206 1.206 19 H -0.209 1.209 20 H -0.195 1.195 21 H 0.109 0.891 22 H 0.052 0.948 23 H 0.071 0.929 24 H 0.091 0.909 25 H 0.065 0.935 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.042 0.958 36 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.296 6.840 -6.214 11.775 hybrid contribution -0.611 0.499 -1.126 1.375 sum -7.907 7.339 -7.340 13.049 Atomic orbital electron populations 1.22848 0.80976 1.03007 0.99909 1.87940 1.20320 1.29527 1.95028 1.22145 0.95098 0.82913 0.94714 0.93239 1.22059 1.00789 0.96700 0.96394 1.20463 0.94689 0.93994 0.96630 1.21938 0.99222 0.98774 0.99896 1.21802 1.02147 1.01333 0.93665 1.21656 0.96909 1.00607 0.95158 1.21526 0.98796 0.97293 0.95837 1.18931 0.92177 0.93235 0.94661 0.98662 1.22155 0.98863 1.42175 0.99036 0.94548 1.27108 0.92877 0.94210 1.09063 1.70862 1.27402 1.45747 1.14272 0.83020 0.75987 0.76885 0.70726 1.20570 1.20917 1.19502 0.89109 0.94758 0.92916 0.90924 0.93496 0.91378 0.91470 0.93821 0.93174 0.91426 0.91333 0.90946 0.93888 0.92660 0.95814 0.93358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.96 10.82 113.37 1.23 2.19 16 2 O -0.41 -18.63 9.97 -148.98 -1.49 -20.12 16 3 C 0.11 4.70 1.76 30.60 0.05 4.75 16 4 H 0.05 2.08 6.08 -2.38 -0.01 2.07 16 5 C -0.12 -4.25 4.35 30.60 0.13 -4.12 16 6 C -0.06 -1.73 0.77 -52.18 -0.04 -1.77 16 7 C -0.14 -3.81 7.78 71.98 0.56 -3.25 16 8 C -0.13 -3.08 8.47 71.98 0.61 -2.47 16 9 C -0.11 -3.77 4.73 30.59 0.14 -3.62 16 10 C -0.10 -4.36 4.91 30.59 0.15 -4.21 16 11 C 0.03 1.49 1.57 -11.54 -0.02 1.47 16 12 H 0.00 -0.29 6.68 -2.39 -0.02 -0.30 16 13 C -0.58 -34.00 7.96 25.60 0.20 -33.80 16 14 H 0.04 2.12 7.81 -2.91 -0.02 2.10 16 15 C -0.04 -2.13 5.45 84.65 0.46 -1.67 16 16 N -0.94 -60.10 13.63 21.45 0.29 -59.81 16 17 Si 1.11 52.68 29.91 68.60 2.05 54.73 16 18 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 19 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 20 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 21 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 22 H 0.03 1.11 8.08 -2.39 -0.02 1.09 16 23 H 0.05 1.45 7.87 -2.38 -0.02 1.43 16 24 H 0.07 2.18 7.87 -2.39 -0.02 2.16 16 25 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 28 H 0.04 1.38 4.81 -2.39 -0.01 1.36 16 29 H 0.05 1.19 8.14 -2.39 -0.02 1.18 16 30 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.05 2.39 6.43 -2.39 -0.02 2.38 16 35 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.26 16.53 6.66 -92.71 -0.62 15.91 16 Total: -1.00 -68.34 277.09 5.52 -62.82 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: 1.17 Total: 8.87 kcal Atomic # 6 Polarization: -49.98 SS G_CDS: 3.49 Total: -46.50 kcal Atomic # 7 Polarization: -60.10 SS G_CDS: 0.29 Total: -59.81 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -1.49 Total: -20.12 kcal Atomic # 14 Polarization: 52.68 SS G_CDS: 2.05 Total: 54.73 kcal Total: -68.34 5.52 -62.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259798013.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.660 kcal (2) G-P(sol) polarization free energy of solvation -68.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds