Wall clock time and date at job start Mon Mar 30 2020 03:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00267 * 2 1 4 4 H 1.09007 * 109.46671 * 330.00151 * 3 2 1 5 5 C 1.52994 * 109.46944 * 90.00096 * 3 2 1 6 6 C 1.53003 * 109.46985 * 179.97438 * 5 3 2 7 7 C 1.52998 * 109.46898 * 179.97438 * 6 5 3 8 8 C 1.52998 * 109.46826 * 60.00332 * 6 5 3 9 9 C 1.52998 * 109.47379 * 299.99965 * 6 5 3 10 10 C 1.53005 * 109.46773 * 59.99902 * 9 6 5 11 11 C 1.52995 * 109.47000 * 210.00412 * 3 2 1 12 12 H 1.08999 * 109.47339 * 299.99722 * 11 3 2 13 13 C 1.50693 * 109.47479 * 59.99885 * 11 3 2 14 14 H 1.07999 * 120.00003 * 0.02562 * 13 11 3 15 15 C 1.37884 * 120.00295 * 179.97438 * 13 11 3 16 16 N 1.31514 * 119.99621 * 0.02562 * 15 13 11 17 17 Si 1.86798 * 120.00041 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47258 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47024 * 120.00508 * 17 15 13 20 20 H 1.48505 * 109.46865 * 239.99780 * 17 15 13 21 21 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46938 * 59.99878 * 1 2 3 23 23 H 1.09004 * 109.46926 * 299.99999 * 1 2 3 24 24 H 1.09004 * 109.47136 * 300.00072 * 5 3 2 25 25 H 1.08995 * 109.47400 * 60.00122 * 5 3 2 26 26 H 1.09001 * 109.46881 * 179.97438 * 7 6 5 27 27 H 1.08991 * 109.48093 * 300.00142 * 7 6 5 28 28 H 1.09007 * 109.47154 * 60.00719 * 7 6 5 29 29 H 1.08999 * 109.47276 * 299.99446 * 8 6 5 30 30 H 1.08992 * 109.47661 * 60.00132 * 8 6 5 31 31 H 1.09000 * 109.47195 * 180.02562 * 8 6 5 32 32 H 1.08999 * 109.46779 * 300.00303 * 9 6 5 33 33 H 1.08990 * 109.47265 * 179.97438 * 9 6 5 34 34 H 1.09004 * 109.46875 * 180.02562 * 10 9 6 35 35 H 1.08995 * 109.47398 * 60.00193 * 10 9 6 36 36 H 0.97005 * 119.99877 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 -0.5139 5 6 2.2178 1.7713 1.4425 6 6 2.8407 3.1687 1.4425 7 6 3.0476 3.6348 2.8850 8 6 1.9074 4.1431 0.7211 9 6 4.1895 3.1259 0.7214 10 6 3.9820 2.6600 -0.7211 11 6 3.3589 1.2632 -0.7213 12 1 4.0242 0.5693 -0.2076 13 6 3.1546 0.8043 -2.1421 14 1 2.1620 0.5670 -2.4954 15 6 4.2346 0.6884 -2.9913 16 7 5.4433 0.9779 -2.5612 17 14 3.9814 0.1189 -4.7522 18 1 2.5382 -0.1420 -4.9854 19 1 4.4504 1.1741 -5.6860 20 1 4.7543 -1.1275 -4.9854 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5139 0.8900 24 1 1.2569 1.8013 1.9563 25 1 2.8830 1.0774 1.9563 26 1 3.4918 4.6302 2.8850 27 1 2.0867 3.6655 3.3984 28 1 3.7124 2.9407 3.3993 29 1 1.7596 3.8113 -0.3066 30 1 0.9466 4.1737 1.2348 31 1 2.3514 5.1386 0.7207 32 1 4.8543 2.4317 1.2354 33 1 4.6330 4.1215 0.7210 34 1 4.9429 2.6291 -1.2347 35 1 3.3171 3.3541 -1.2351 36 1 6.2031 0.8968 -3.1587 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259798016.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:59 Heat of formation + Delta-G solvation = -74.664034 kcal Electronic energy + Delta-G solvation = -15374.479274 eV Core-core repulsion = 13050.635922 eV Total energy + Delta-G solvation = -2323.843352 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.06712 -36.23257 -33.54063 -30.84966 -29.15084 -26.94689 -26.65501 -25.84186 -23.39987 -21.35377 -19.88297 -17.70395 -16.30934 -15.67786 -14.79925 -14.56853 -14.12517 -13.76092 -13.62982 -12.94851 -12.81237 -12.33833 -11.85717 -11.68531 -11.55002 -11.16168 -11.06821 -10.86592 -10.83152 -10.60738 -10.25071 -10.16238 -10.03494 -9.61666 -9.43102 -9.17315 -8.67523 -8.38023 -8.18104 -5.89029 -3.92536 3.35122 3.42983 3.47593 4.51876 4.65536 5.29828 5.37571 5.38696 5.43140 5.77809 5.83792 5.92775 5.94606 6.06411 6.14131 6.16051 6.17941 6.23813 6.27625 6.37017 6.50772 6.56170 6.57954 6.78360 6.84042 6.93698 7.07462 7.26211 7.47849 7.83961 7.88992 8.16656 8.35862 8.55383 9.09608 9.69931 11.17025 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.031235 B = 0.011434 C = 0.009221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.204316 B = 2448.181385 C = 3035.834538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.373 6.373 3 C 0.097 3.903 4 H 0.048 0.952 5 C -0.126 4.126 6 C -0.061 4.061 7 C -0.138 4.138 8 C -0.143 4.143 9 C -0.109 4.109 10 C -0.109 4.109 11 C 0.054 3.946 12 H 0.031 0.969 13 C -0.496 4.496 14 H 0.054 0.946 15 C 0.058 3.942 16 N -0.894 5.894 17 Si 0.888 3.112 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.285 1.285 21 H 0.072 0.928 22 H 0.033 0.967 23 H 0.026 0.974 24 H 0.045 0.955 25 H 0.062 0.938 26 H 0.049 0.951 27 H 0.046 0.954 28 H 0.051 0.949 29 H 0.067 0.933 30 H 0.043 0.957 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.044 0.956 34 H 0.096 0.904 35 H 0.038 0.962 36 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.042 4.361 7.030 10.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.291 6.291 3 C 0.040 3.960 4 H 0.066 0.934 5 C -0.164 4.164 6 C -0.061 4.061 7 C -0.195 4.195 8 C -0.200 4.200 9 C -0.146 4.146 10 C -0.147 4.147 11 C 0.036 3.964 12 H 0.049 0.951 13 C -0.534 4.534 14 H 0.073 0.927 15 C -0.142 4.142 16 N -0.534 5.534 17 Si 0.717 3.283 18 H -0.199 1.199 19 H -0.213 1.213 20 H -0.212 1.212 21 H 0.091 0.909 22 H 0.052 0.948 23 H 0.045 0.955 24 H 0.063 0.937 25 H 0.081 0.919 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.114 0.886 35 H 0.056 0.944 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.749 4.195 6.964 9.958 hybrid contribution -0.326 -0.097 -0.905 0.966 sum -6.075 4.098 6.060 9.509 Atomic orbital electron populations 1.22617 0.83789 1.01222 0.98714 1.87989 1.17170 1.29218 1.94731 1.22457 0.97677 0.82692 0.93162 0.93405 1.22086 0.99474 0.95999 0.98854 1.20485 0.96606 0.94570 0.94481 1.21866 1.00722 1.00595 0.96340 1.21965 0.98157 0.98498 1.01425 1.21709 0.94605 0.99656 0.98677 1.21639 1.03602 0.96890 0.92569 1.18722 0.89152 0.93747 0.94821 0.95067 1.21145 0.93469 1.43193 0.95598 0.92749 1.24937 0.95284 0.95672 0.98305 1.69883 0.98385 1.49720 1.35398 0.86592 0.78133 0.78295 0.85297 1.19927 1.21257 1.21158 0.90932 0.94805 0.95545 0.93669 0.91909 0.93139 0.93490 0.92995 0.91376 0.93830 0.93304 0.92815 0.93740 0.88600 0.94368 0.93265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.82 101.05 1.09 1.67 16 2 O -0.37 -8.26 9.94 -35.23 -0.35 -8.61 16 3 C 0.10 2.10 1.72 -26.74 -0.05 2.06 16 4 H 0.05 1.02 6.08 -51.93 -0.32 0.71 16 5 C -0.13 -2.33 4.35 -26.73 -0.12 -2.44 16 6 C -0.06 -1.03 0.77 -154.51 -0.12 -1.15 16 7 C -0.14 -1.94 8.47 37.16 0.31 -1.63 16 8 C -0.14 -2.26 7.78 37.16 0.29 -1.97 16 9 C -0.11 -2.09 4.73 -26.73 -0.13 -2.22 16 10 C -0.11 -2.53 4.70 -26.75 -0.13 -2.66 16 11 C 0.05 1.37 1.84 -91.80 -0.17 1.20 16 12 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 13 C -0.50 -13.89 8.23 -34.44 -0.28 -14.18 16 14 H 0.05 1.54 7.70 -52.49 -0.40 1.14 16 15 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 16 N -0.89 -25.81 11.32 55.43 0.63 -25.18 16 17 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 18 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 22 H 0.03 0.56 8.08 -51.93 -0.42 0.14 16 23 H 0.03 0.39 7.87 -51.93 -0.41 -0.01 16 24 H 0.04 0.75 7.87 -51.93 -0.41 0.35 16 25 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.07 1.19 4.81 -51.93 -0.25 0.94 16 30 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.10 2.52 6.06 -51.93 -0.31 2.20 16 35 H 0.04 0.87 6.43 -51.93 -0.33 0.53 16 36 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 275.45 15.07 4.15 4.15 Total: -1.00 -29.02 275.45 -6.19 -35.21 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -6.22 Total: -2.57 kcal Atomic # 6 Polarization: -20.40 SS G_CDS: 0.62 Total: -19.79 kcal Atomic # 7 Polarization: -25.81 SS G_CDS: 0.63 Total: -25.18 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: -0.35 Total: -8.61 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.02 -6.19 -35.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259798016.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.450 kcal (2) G-P(sol) polarization free energy of solvation -29.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds