Wall clock time and date at job start Mon Mar 30 2020 03:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00267 * 2 1 4 4 H 1.09007 * 109.46671 * 330.00151 * 3 2 1 5 5 C 1.52994 * 109.46944 * 90.00096 * 3 2 1 6 6 C 1.53003 * 109.46985 * 179.97438 * 5 3 2 7 7 C 1.52998 * 109.46898 * 179.97438 * 6 5 3 8 8 C 1.52998 * 109.46826 * 60.00332 * 6 5 3 9 9 C 1.52998 * 109.47379 * 299.99965 * 6 5 3 10 10 C 1.53005 * 109.46773 * 59.99902 * 9 6 5 11 11 C 1.52995 * 109.47000 * 210.00412 * 3 2 1 12 12 H 1.08999 * 109.47339 * 299.99722 * 11 3 2 13 13 C 1.50693 * 109.47479 * 59.99885 * 11 3 2 14 14 H 1.07999 * 120.00003 * 0.02562 * 13 11 3 15 15 C 1.37884 * 120.00295 * 179.97438 * 13 11 3 16 16 N 1.31514 * 119.99621 * 0.02562 * 15 13 11 17 17 Si 1.86798 * 120.00041 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47258 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47024 * 120.00508 * 17 15 13 20 20 H 1.48505 * 109.46865 * 239.99780 * 17 15 13 21 21 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46938 * 59.99878 * 1 2 3 23 23 H 1.09004 * 109.46926 * 299.99999 * 1 2 3 24 24 H 1.09004 * 109.47136 * 300.00072 * 5 3 2 25 25 H 1.08995 * 109.47400 * 60.00122 * 5 3 2 26 26 H 1.09001 * 109.46881 * 179.97438 * 7 6 5 27 27 H 1.08991 * 109.48093 * 300.00142 * 7 6 5 28 28 H 1.09007 * 109.47154 * 60.00719 * 7 6 5 29 29 H 1.08999 * 109.47276 * 299.99446 * 8 6 5 30 30 H 1.08992 * 109.47661 * 60.00132 * 8 6 5 31 31 H 1.09000 * 109.47195 * 180.02562 * 8 6 5 32 32 H 1.08999 * 109.46779 * 300.00303 * 9 6 5 33 33 H 1.08990 * 109.47265 * 179.97438 * 9 6 5 34 34 H 1.09004 * 109.46875 * 180.02562 * 10 9 6 35 35 H 1.08995 * 109.47398 * 60.00193 * 10 9 6 36 36 H 0.97005 * 119.99877 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 -0.5139 5 6 2.2178 1.7713 1.4425 6 6 2.8407 3.1687 1.4425 7 6 3.0476 3.6348 2.8850 8 6 1.9074 4.1431 0.7211 9 6 4.1895 3.1259 0.7214 10 6 3.9820 2.6600 -0.7211 11 6 3.3589 1.2632 -0.7213 12 1 4.0242 0.5693 -0.2076 13 6 3.1546 0.8043 -2.1421 14 1 2.1620 0.5670 -2.4954 15 6 4.2346 0.6884 -2.9913 16 7 5.4433 0.9779 -2.5612 17 14 3.9814 0.1189 -4.7522 18 1 2.5382 -0.1420 -4.9854 19 1 4.4504 1.1741 -5.6860 20 1 4.7543 -1.1275 -4.9854 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5139 0.8900 24 1 1.2569 1.8013 1.9563 25 1 2.8830 1.0774 1.9563 26 1 3.4918 4.6302 2.8850 27 1 2.0867 3.6655 3.3984 28 1 3.7124 2.9407 3.3993 29 1 1.7596 3.8113 -0.3066 30 1 0.9466 4.1737 1.2348 31 1 2.3514 5.1386 0.7207 32 1 4.8543 2.4317 1.2354 33 1 4.6330 4.1215 0.7210 34 1 4.9429 2.6291 -1.2347 35 1 3.3171 3.3541 -1.2351 36 1 6.2031 0.8968 -3.1587 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259798016.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:59 Heat of formation + Delta-G solvation = -91.632960 kcal Electronic energy + Delta-G solvation = -15375.215102 eV Core-core repulsion = 13050.635922 eV Total energy + Delta-G solvation = -2324.579180 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.64955 -37.77622 -35.49297 -32.72140 -30.76584 -28.42350 -28.13396 -27.28181 -25.24077 -23.03061 -21.62522 -19.23411 -18.41599 -17.27233 -16.70241 -16.08791 -15.79801 -15.19146 -15.11520 -14.59158 -14.25580 -14.01354 -13.42455 -13.26716 -12.88823 -12.84771 -12.64166 -12.52990 -12.45811 -12.31182 -12.00563 -11.75582 -11.61732 -11.33577 -11.05805 -10.95107 -10.59360 -10.34339 -10.00437 -8.04391 -6.16171 1.38439 1.40178 1.51647 2.44825 3.09806 3.26918 3.91280 4.01412 4.07001 4.31500 4.48872 4.59221 4.64381 4.69662 4.71921 4.78485 4.85033 4.86148 4.92122 4.98632 5.04220 5.11329 5.23919 5.27243 5.36690 5.39834 5.44651 5.61097 5.67748 5.73326 5.97410 6.14850 6.43572 6.69044 6.93273 7.49474 8.99784 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.031235 B = 0.011434 C = 0.009221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.204316 B = 2448.181385 C = 3035.834538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.409 6.409 3 C 0.103 3.897 4 H 0.050 0.950 5 C -0.119 4.119 6 C -0.059 4.059 7 C -0.132 4.132 8 C -0.141 4.141 9 C -0.103 4.103 10 C -0.100 4.100 11 C 0.051 3.949 12 H -0.014 1.014 13 C -0.515 4.515 14 H 0.044 0.956 15 C 0.009 3.991 16 N -0.919 5.919 17 Si 0.950 3.050 18 H -0.270 1.270 19 H -0.278 1.278 20 H -0.283 1.283 21 H 0.091 0.909 22 H 0.033 0.967 23 H 0.052 0.948 24 H 0.071 0.929 25 H 0.048 0.952 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.049 0.951 29 H 0.043 0.957 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.040 0.960 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.038 0.962 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.537 5.381 7.899 12.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.328 6.328 3 C 0.046 3.954 4 H 0.068 0.932 5 C -0.157 4.157 6 C -0.059 4.059 7 C -0.189 4.189 8 C -0.198 4.198 9 C -0.141 4.141 10 C -0.139 4.139 11 C 0.033 3.967 12 H 0.004 0.996 13 C -0.553 4.553 14 H 0.063 0.937 15 C -0.188 4.188 16 N -0.559 5.559 17 Si 0.776 3.224 18 H -0.195 1.195 19 H -0.203 1.203 20 H -0.209 1.209 21 H 0.110 0.890 22 H 0.052 0.948 23 H 0.070 0.930 24 H 0.090 0.910 25 H 0.067 0.933 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.059 0.941 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.057 0.943 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.256 5.219 7.839 11.889 hybrid contribution 0.125 -0.467 -1.193 1.288 sum -7.131 4.752 6.646 10.844 Atomic orbital electron populations 1.22855 0.81087 1.02996 0.99908 1.87922 1.20223 1.29613 1.95057 1.22261 0.95420 0.82821 0.94880 0.93207 1.22021 1.00655 0.96591 0.96457 1.20485 0.94914 0.94105 0.96438 1.21800 1.02033 1.01201 0.93877 1.21928 0.99137 0.98684 1.00016 1.21627 0.96488 1.00013 0.95954 1.21413 1.01318 0.95936 0.95183 1.18675 0.90857 0.93616 0.93568 0.99600 1.21444 0.93080 1.43539 0.97282 0.93740 1.25695 0.95079 0.95843 1.02213 1.70027 0.98978 1.50264 1.36654 0.85629 0.78135 0.77935 0.80701 1.19473 1.20325 1.20903 0.89015 0.94839 0.92975 0.91022 0.93310 0.91648 0.91460 0.93152 0.93761 0.91504 0.91786 0.94139 0.91850 0.92235 0.94317 0.93211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.90 10.82 113.37 1.23 2.13 16 2 O -0.41 -18.09 9.94 -148.98 -1.48 -19.57 16 3 C 0.10 4.46 1.72 30.59 0.05 4.51 16 4 H 0.05 2.11 6.08 -2.38 -0.01 2.09 16 5 C -0.12 -4.22 4.35 30.59 0.13 -4.09 16 6 C -0.06 -1.86 0.77 -52.18 -0.04 -1.90 16 7 C -0.13 -3.23 8.47 71.98 0.61 -2.62 16 8 C -0.14 -4.02 7.78 71.98 0.56 -3.46 16 9 C -0.10 -3.93 4.73 30.60 0.14 -3.78 16 10 C -0.10 -4.79 4.70 30.58 0.14 -4.65 16 11 C 0.05 2.69 1.84 -11.56 -0.02 2.67 16 12 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 13 C -0.52 -29.77 8.23 25.60 0.21 -29.56 16 14 H 0.04 2.59 7.70 -2.91 -0.02 2.56 16 15 C 0.01 0.54 5.30 84.66 0.45 0.99 16 16 N -0.92 -54.79 11.32 21.45 0.24 -54.55 16 17 Si 0.95 45.43 29.54 68.60 2.03 47.46 16 18 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 19 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 20 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 21 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 22 H 0.03 1.07 8.08 -2.39 -0.02 1.05 16 23 H 0.05 1.41 7.87 -2.38 -0.02 1.39 16 24 H 0.07 2.16 7.87 -2.38 -0.02 2.14 16 25 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 29 H 0.04 1.47 4.81 -2.39 -0.01 1.46 16 30 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.06 3.26 6.06 -2.38 -0.01 3.24 16 35 H 0.04 1.80 6.43 -2.39 -0.02 1.78 16 36 H 0.26 14.64 8.31 -92.70 -0.77 13.87 16 Total: -1.00 -64.36 275.45 5.28 -59.08 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: 1.02 Total: 7.35 kcal Atomic # 6 Polarization: -43.23 SS G_CDS: 3.47 Total: -39.76 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: 0.24 Total: -54.55 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: -1.48 Total: -19.57 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -64.36 5.28 -59.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259798016.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.549 kcal (2) G-P(sol) polarization free energy of solvation -64.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds