Wall clock time and date at job start Mon Mar 30 2020 02:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47441 * 110.99771 * 2 1 4 4 C 1.54321 * 107.23341 * 123.25945 * 3 2 1 5 5 C 1.55262 * 103.08615 * 22.20356 * 4 3 2 6 6 C 1.47847 * 111.00003 * 120.83980 * 2 1 3 7 7 H 1.08993 * 110.37796 * 332.57925 * 6 2 1 8 8 C 1.53009 * 110.37023 * 94.81153 * 6 2 1 9 9 C 1.50700 * 109.46791 * 185.75330 * 8 6 2 10 10 O 1.21294 * 120.00228 * 5.56419 * 9 8 6 11 11 N 1.34776 * 120.00082 * 185.57181 * 9 8 6 12 12 C 1.37097 * 120.00431 * 179.72043 * 11 9 8 13 13 H 1.08001 * 119.99437 * 0.27475 * 12 11 9 14 14 C 1.38949 * 120.00084 * 180.27352 * 12 11 9 15 15 N 1.31405 * 120.00120 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99897 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47375 * 89.99747 * 16 14 12 18 18 H 1.48498 * 109.47262 * 210.00295 * 16 14 12 19 19 H 1.48503 * 109.47017 * 330.00254 * 16 14 12 20 20 H 1.09002 * 109.47337 * 300.41741 * 1 2 3 21 21 H 1.08995 * 109.46927 * 60.42477 * 1 2 3 22 22 H 1.09005 * 109.46721 * 180.42341 * 1 2 3 23 23 H 1.09007 * 109.88869 * 242.66138 * 3 2 1 24 24 H 1.09001 * 109.88880 * 3.68950 * 3 2 1 25 25 H 1.09004 * 110.71064 * 140.66562 * 4 3 2 26 26 H 1.09000 * 110.70421 * 263.90297 * 4 3 2 27 27 H 1.09003 * 111.08490 * 206.38984 * 5 4 3 28 28 H 1.08993 * 110.94629 * 82.53368 * 5 4 3 29 29 H 1.08994 * 109.47398 * 65.75184 * 8 6 2 30 30 H 1.09003 * 109.46908 * 305.74627 * 8 6 2 31 31 H 0.97005 * 119.99577 * 0.02562 * 11 9 8 32 32 H 0.96998 * 119.99779 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9973 1.3765 0.0000 4 6 2.9158 1.5137 1.2325 5 6 3.3044 0.0437 1.5467 6 6 1.9988 -0.7076 1.1851 7 1 1.2882 -0.6518 2.0096 8 6 2.3020 -2.1676 0.8423 9 6 2.7054 -2.9040 2.0937 10 8 2.6496 -2.3472 3.1698 11 7 3.1285 -4.1814 2.0171 12 6 3.5009 -4.8496 3.1548 13 1 3.4511 -4.3537 4.1130 14 6 3.9424 -6.1646 3.0752 15 7 4.0025 -6.7681 1.9094 16 14 4.4493 -7.0752 4.6255 17 1 3.2686 -7.7680 5.2011 18 1 5.4961 -8.0746 4.2927 19 1 4.9861 -6.1069 5.6152 20 1 -0.3634 0.5203 0.8862 21 1 -0.3633 0.5072 -0.8937 22 1 -0.3633 -1.0277 0.0076 23 1 2.5697 1.5540 -0.9106 24 1 1.1752 2.0892 0.0660 25 1 3.8001 2.1034 0.9906 26 1 2.3743 1.9546 2.0695 27 1 3.5470 -0.0808 2.6021 28 1 4.1309 -0.2841 0.9164 29 1 3.1154 -2.2094 0.1179 30 1 1.4127 -2.6333 0.4174 31 1 3.1736 -4.6266 1.1564 32 1 4.3111 -7.6860 1.8538 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259829049.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:09 Heat of formation + Delta-G solvation = -43.613486 kcal Electronic energy + Delta-G solvation = -14229.980906 eV Core-core repulsion = 11803.943664 eV Total energy + Delta-G solvation = -2426.037243 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.19029 -37.64074 -33.93408 -31.82447 -31.38031 -30.82575 -26.42045 -25.36834 -24.11668 -20.93171 -20.09769 -18.87242 -17.79097 -16.30275 -15.31658 -15.17801 -14.40445 -14.28262 -13.88365 -13.70602 -13.16023 -12.91227 -12.45453 -12.03914 -11.63234 -11.58895 -11.21793 -11.07527 -10.95474 -10.87341 -10.42759 -10.36577 -10.23616 -10.16285 -9.47249 -8.36817 -8.12777 -7.93018 -6.38377 -3.79174 3.19680 3.27968 3.33844 3.96393 4.05352 4.26249 4.83146 4.95655 5.14524 5.22896 5.30593 5.48147 5.54006 5.56002 5.69517 5.79362 5.88625 5.95990 6.05967 6.10703 6.33497 6.38559 6.47107 6.54352 6.62643 7.18346 7.28756 7.58046 8.09656 8.64882 9.20913 9.59438 10.10765 10.79415 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.062499 B = 0.006505 C = 0.006237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.900652 B = 4303.417619 C = 4488.190097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.537 5.537 3 C 0.044 3.956 4 C -0.144 4.144 5 C -0.118 4.118 6 C 0.093 3.907 7 H 0.064 0.936 8 C -0.114 4.114 9 C 0.443 3.557 10 O -0.598 6.598 11 N -0.563 5.563 12 C -0.300 4.300 13 H 0.102 0.898 14 C 0.022 3.978 15 N -0.901 5.901 16 Si 0.929 3.071 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.270 1.270 20 H 0.024 0.976 21 H 0.063 0.937 22 H 0.068 0.932 23 H 0.073 0.927 24 H 0.050 0.950 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.085 0.915 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.393 0.607 32 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.449 11.122 -4.814 12.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.261 5.261 3 C -0.084 4.084 4 C -0.183 4.183 5 C -0.156 4.156 6 C -0.015 4.015 7 H 0.082 0.918 8 C -0.155 4.155 9 C 0.228 3.772 10 O -0.484 6.484 11 N -0.199 5.199 12 C -0.430 4.430 13 H 0.120 0.880 14 C -0.180 4.180 15 N -0.543 5.543 16 Si 0.757 3.243 17 H -0.204 1.204 18 H -0.209 1.209 19 H -0.195 1.195 20 H 0.043 0.957 21 H 0.082 0.918 22 H 0.087 0.913 23 H 0.092 0.908 24 H 0.068 0.932 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.104 0.896 28 H 0.089 0.911 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.226 0.774 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.278 11.034 -4.602 12.397 hybrid contribution -0.058 -0.465 0.843 0.964 sum -3.335 10.569 -3.759 11.703 Atomic orbital electron populations 1.22506 0.88079 1.02103 0.99989 1.63418 1.07560 1.13680 1.41455 1.22777 0.97713 0.89397 0.98475 1.22820 0.99585 0.98142 0.97712 1.22721 0.97097 0.92879 1.02893 1.22210 0.96291 0.92971 0.89992 0.91778 1.21358 1.02309 0.94379 0.97447 1.19937 0.84013 0.83105 0.90103 1.90489 1.59789 1.67942 1.30225 1.41908 1.57078 1.10546 1.10319 1.19715 1.40010 0.94772 0.88517 0.87980 1.25263 0.97579 0.96904 0.98227 1.69616 1.47428 1.13518 1.23705 0.85870 0.78259 0.79039 0.81179 1.20441 1.20929 1.19454 0.95733 0.91796 0.91331 0.90832 0.93179 0.91088 0.91814 0.89622 0.91145 0.90100 0.90522 0.77355 0.91890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.11 60.06 0.55 0.82 16 2 N -0.54 -7.84 5.10 -231.59 -1.18 -9.02 16 3 C 0.04 0.55 6.90 -2.84 -0.02 0.53 16 4 C -0.14 -1.85 6.94 -24.84 -0.17 -2.03 16 5 C -0.12 -1.92 5.95 -24.53 -0.15 -2.07 16 6 C 0.09 1.60 2.05 -66.18 -0.14 1.46 16 7 H 0.06 1.22 7.44 -51.93 -0.39 0.83 16 8 C -0.11 -2.13 5.53 -27.88 -0.15 -2.29 16 9 C 0.44 10.62 7.55 -10.99 -0.08 10.54 16 10 O -0.60 -16.12 14.51 5.55 0.08 -16.04 16 11 N -0.56 -14.60 5.29 -10.96 -0.06 -14.66 16 12 C -0.30 -8.50 9.68 -14.93 -0.14 -8.65 16 13 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 14 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 15 N -0.90 -24.92 13.05 55.50 0.72 -24.19 16 16 Si 0.93 21.26 29.55 -169.99 -5.02 16.24 16 17 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 19 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 20 H 0.02 0.30 8.11 -51.93 -0.42 -0.12 16 21 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 23 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 24 H 0.05 0.55 7.58 -51.93 -0.39 0.16 16 25 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.09 1.57 7.50 -51.93 -0.39 1.18 16 28 H 0.07 1.14 7.96 -51.93 -0.41 0.73 16 29 H 0.08 1.44 8.01 -51.93 -0.42 1.02 16 30 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 31 H 0.39 9.84 7.90 -40.82 -0.32 9.51 16 32 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 266.86 15.07 4.02 4.02 Total: -1.00 -30.29 266.86 -6.63 -36.92 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -4.79 Total: 7.92 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: -0.40 Total: -1.17 kcal Atomic # 7 Polarization: -47.36 SS G_CDS: -0.51 Total: -47.88 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: 0.08 Total: -16.04 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -30.29 -6.63 -36.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259829049.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.695 kcal (2) G-P(sol) polarization free energy of solvation -30.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds