Wall clock time and date at job start Mon Mar 30 2020 02:49:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46899 * 1
3 3 C 1.47441 * 110.99771 * 2 1
4 4 C 1.54321 * 107.23341 * 123.25945 * 3 2 1
5 5 C 1.55262 * 103.08615 * 22.20356 * 4 3 2
6 6 C 1.47847 * 111.00003 * 120.83980 * 2 1 3
7 7 H 1.08993 * 110.37796 * 332.57925 * 6 2 1
8 8 C 1.53009 * 110.37023 * 94.81153 * 6 2 1
9 9 C 1.50700 * 109.46791 * 185.75330 * 8 6 2
10 10 O 1.21294 * 120.00228 * 5.56419 * 9 8 6
11 11 N 1.34776 * 120.00082 * 185.57181 * 9 8 6
12 12 C 1.37097 * 120.00431 * 179.72043 * 11 9 8
13 13 H 1.08001 * 119.99437 * 0.27475 * 12 11 9
14 14 C 1.38949 * 120.00084 * 180.27352 * 12 11 9
15 15 N 1.31405 * 120.00120 * 359.97438 * 14 12 11
16 16 Si 1.86802 * 119.99897 * 180.02562 * 14 12 11
17 17 H 1.48497 * 109.47375 * 89.99747 * 16 14 12
18 18 H 1.48498 * 109.47262 * 210.00295 * 16 14 12
19 19 H 1.48503 * 109.47017 * 330.00254 * 16 14 12
20 20 H 1.09002 * 109.47337 * 300.41741 * 1 2 3
21 21 H 1.08995 * 109.46927 * 60.42477 * 1 2 3
22 22 H 1.09005 * 109.46721 * 180.42341 * 1 2 3
23 23 H 1.09007 * 109.88869 * 242.66138 * 3 2 1
24 24 H 1.09001 * 109.88880 * 3.68950 * 3 2 1
25 25 H 1.09004 * 110.71064 * 140.66562 * 4 3 2
26 26 H 1.09000 * 110.70421 * 263.90297 * 4 3 2
27 27 H 1.09003 * 111.08490 * 206.38984 * 5 4 3
28 28 H 1.08993 * 110.94629 * 82.53368 * 5 4 3
29 29 H 1.08994 * 109.47398 * 65.75184 * 8 6 2
30 30 H 1.09003 * 109.46908 * 305.74627 * 8 6 2
31 31 H 0.97005 * 119.99577 * 0.02562 * 11 9 8
32 32 H 0.96998 * 119.99779 * 179.97438 * 15 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9973 1.3765 0.0000
4 6 2.9158 1.5137 1.2325
5 6 3.3044 0.0437 1.5467
6 6 1.9988 -0.7076 1.1851
7 1 1.2882 -0.6518 2.0096
8 6 2.3020 -2.1676 0.8423
9 6 2.7054 -2.9040 2.0937
10 8 2.6496 -2.3472 3.1698
11 7 3.1285 -4.1814 2.0171
12 6 3.5009 -4.8496 3.1548
13 1 3.4511 -4.3537 4.1130
14 6 3.9424 -6.1646 3.0752
15 7 4.0025 -6.7681 1.9094
16 14 4.4493 -7.0752 4.6255
17 1 3.2686 -7.7680 5.2011
18 1 5.4961 -8.0746 4.2927
19 1 4.9861 -6.1069 5.6152
20 1 -0.3634 0.5203 0.8862
21 1 -0.3633 0.5072 -0.8937
22 1 -0.3633 -1.0277 0.0076
23 1 2.5697 1.5540 -0.9106
24 1 1.1752 2.0892 0.0660
25 1 3.8001 2.1034 0.9906
26 1 2.3743 1.9546 2.0695
27 1 3.5470 -0.0808 2.6021
28 1 4.1309 -0.2841 0.9164
29 1 3.1154 -2.2094 0.1179
30 1 1.4127 -2.6333 0.4174
31 1 3.1736 -4.6266 1.1564
32 1 4.3111 -7.6860 1.8538
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000259829049.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:49:09
Heat of formation + Delta-G solvation = -43.613486 kcal
Electronic energy + Delta-G solvation = -14229.980906 eV
Core-core repulsion = 11803.943664 eV
Total energy + Delta-G solvation = -2426.037243 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 212.127 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-39.19029 -37.64074 -33.93408 -31.82447 -31.38031 -30.82575 -26.42045 -25.36834
-24.11668 -20.93171 -20.09769 -18.87242 -17.79097 -16.30275 -15.31658 -15.17801
-14.40445 -14.28262 -13.88365 -13.70602 -13.16023 -12.91227 -12.45453 -12.03914
-11.63234 -11.58895 -11.21793 -11.07527 -10.95474 -10.87341 -10.42759 -10.36577
-10.23616 -10.16285 -9.47249 -8.36817 -8.12777 -7.93018 -6.38377 -3.79174
3.19680 3.27968 3.33844 3.96393 4.05352 4.26249 4.83146 4.95655
5.14524 5.22896 5.30593 5.48147 5.54006 5.56002 5.69517 5.79362
5.88625 5.95990 6.05967 6.10703 6.33497 6.38559 6.47107 6.54352
6.62643 7.18346 7.28756 7.58046 8.09656 8.64882 9.20913 9.59438
10.10765 10.79415
Molecular weight = 212.13amu
Principal moments of inertia in cm(-1)
A = 0.062499 B = 0.006505 C = 0.006237
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 447.900652 B = 4303.417619 C = 4488.190097
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.022 3.978
2 N -0.537 5.537
3 C 0.044 3.956
4 C -0.144 4.144
5 C -0.118 4.118
6 C 0.093 3.907
7 H 0.064 0.936
8 C -0.114 4.114
9 C 0.443 3.557
10 O -0.598 6.598
11 N -0.563 5.563
12 C -0.300 4.300
13 H 0.102 0.898
14 C 0.022 3.978
15 N -0.901 5.901
16 Si 0.929 3.071
17 H -0.278 1.278
18 H -0.284 1.284
19 H -0.270 1.270
20 H 0.024 0.976
21 H 0.063 0.937
22 H 0.068 0.932
23 H 0.073 0.927
24 H 0.050 0.950
25 H 0.070 0.930
26 H 0.063 0.937
27 H 0.085 0.915
28 H 0.070 0.930
29 H 0.081 0.919
30 H 0.076 0.924
31 H 0.393 0.607
32 H 0.271 0.729
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.449 11.122 -4.814 12.600
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.127 4.127
2 N -0.261 5.261
3 C -0.084 4.084
4 C -0.183 4.183
5 C -0.156 4.156
6 C -0.015 4.015
7 H 0.082 0.918
8 C -0.155 4.155
9 C 0.228 3.772
10 O -0.484 6.484
11 N -0.199 5.199
12 C -0.430 4.430
13 H 0.120 0.880
14 C -0.180 4.180
15 N -0.543 5.543
16 Si 0.757 3.243
17 H -0.204 1.204
18 H -0.209 1.209
19 H -0.195 1.195
20 H 0.043 0.957
21 H 0.082 0.918
22 H 0.087 0.913
23 H 0.092 0.908
24 H 0.068 0.932
25 H 0.089 0.911
26 H 0.082 0.918
27 H 0.104 0.896
28 H 0.089 0.911
29 H 0.099 0.901
30 H 0.095 0.905
31 H 0.226 0.774
32 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges -3.278 11.034 -4.602 12.397
hybrid contribution -0.058 -0.465 0.843 0.964
sum -3.335 10.569 -3.759 11.703
Atomic orbital electron populations
1.22506 0.88079 1.02103 0.99989 1.63418 1.07560 1.13680 1.41455
1.22777 0.97713 0.89397 0.98475 1.22820 0.99585 0.98142 0.97712
1.22721 0.97097 0.92879 1.02893 1.22210 0.96291 0.92971 0.89992
0.91778 1.21358 1.02309 0.94379 0.97447 1.19937 0.84013 0.83105
0.90103 1.90489 1.59789 1.67942 1.30225 1.41908 1.57078 1.10546
1.10319 1.19715 1.40010 0.94772 0.88517 0.87980 1.25263 0.97579
0.96904 0.98227 1.69616 1.47428 1.13518 1.23705 0.85870 0.78259
0.79039 0.81179 1.20441 1.20929 1.19454 0.95733 0.91796 0.91331
0.90832 0.93179 0.91088 0.91814 0.89622 0.91145 0.90100 0.90522
0.77355 0.91890
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.28 9.11 60.06 0.55 0.82 16
2 N -0.54 -7.84 5.10 -231.59 -1.18 -9.02 16
3 C 0.04 0.55 6.90 -2.84 -0.02 0.53 16
4 C -0.14 -1.85 6.94 -24.84 -0.17 -2.03 16
5 C -0.12 -1.92 5.95 -24.53 -0.15 -2.07 16
6 C 0.09 1.60 2.05 -66.18 -0.14 1.46 16
7 H 0.06 1.22 7.44 -51.93 -0.39 0.83 16
8 C -0.11 -2.13 5.53 -27.88 -0.15 -2.29 16
9 C 0.44 10.62 7.55 -10.99 -0.08 10.54 16
10 O -0.60 -16.12 14.51 5.55 0.08 -16.04 16
11 N -0.56 -14.60 5.29 -10.96 -0.06 -14.66 16
12 C -0.30 -8.50 9.68 -14.93 -0.14 -8.65 16
13 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16
14 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16
15 N -0.90 -24.92 13.05 55.50 0.72 -24.19 16
16 Si 0.93 21.26 29.55 -169.99 -5.02 16.24 16
17 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16
18 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16
19 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16
20 H 0.02 0.30 8.11 -51.93 -0.42 -0.12 16
21 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16
22 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16
23 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16
24 H 0.05 0.55 7.58 -51.93 -0.39 0.16 16
25 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16
26 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16
27 H 0.09 1.57 7.50 -51.93 -0.39 1.18 16
28 H 0.07 1.14 7.96 -51.93 -0.41 0.73 16
29 H 0.08 1.44 8.01 -51.93 -0.42 1.02 16
30 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16
31 H 0.39 9.84 7.90 -40.82 -0.32 9.51 16
32 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16
LS Contribution 266.86 15.07 4.02 4.02
Total: -1.00 -30.29 266.86 -6.63 -36.92
By element:
Atomic # 1 Polarization: 12.71 SS G_CDS: -4.79 Total: 7.92 kcal
Atomic # 6 Polarization: -0.77 SS G_CDS: -0.40 Total: -1.17 kcal
Atomic # 7 Polarization: -47.36 SS G_CDS: -0.51 Total: -47.88 kcal
Atomic # 8 Polarization: -16.12 SS G_CDS: 0.08 Total: -16.04 kcal
Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal
Total LS contribution 4.02 Total: 4.02 kcal
Total: -30.29 -6.63 -36.92 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259829049.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -6.695 kcal
(2) G-P(sol) polarization free energy of solvation -30.289 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.984 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.630 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.918 kcal
(6) G-S(sol) free energy of system = (1) + (5) -43.613 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds