Wall clock time and date at job start Mon Mar 30 2020 02:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47441 * 110.99771 * 2 1 4 4 C 1.54321 * 107.23341 * 123.25945 * 3 2 1 5 5 C 1.55262 * 103.08615 * 22.20356 * 4 3 2 6 6 C 1.47847 * 111.00003 * 120.83980 * 2 1 3 7 7 H 1.08993 * 110.37796 * 332.57925 * 6 2 1 8 8 C 1.53009 * 110.37023 * 94.81153 * 6 2 1 9 9 C 1.50700 * 109.46791 * 185.75330 * 8 6 2 10 10 O 1.21294 * 120.00228 * 5.56419 * 9 8 6 11 11 N 1.34776 * 120.00082 * 185.57181 * 9 8 6 12 12 C 1.37097 * 120.00431 * 179.72043 * 11 9 8 13 13 H 1.08001 * 119.99437 * 0.27475 * 12 11 9 14 14 C 1.38949 * 120.00084 * 180.27352 * 12 11 9 15 15 N 1.31405 * 120.00120 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99897 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47375 * 89.99747 * 16 14 12 18 18 H 1.48498 * 109.47262 * 210.00295 * 16 14 12 19 19 H 1.48503 * 109.47017 * 330.00254 * 16 14 12 20 20 H 1.09002 * 109.47337 * 300.41741 * 1 2 3 21 21 H 1.08995 * 109.46927 * 60.42477 * 1 2 3 22 22 H 1.09005 * 109.46721 * 180.42341 * 1 2 3 23 23 H 1.09007 * 109.88869 * 242.66138 * 3 2 1 24 24 H 1.09001 * 109.88880 * 3.68950 * 3 2 1 25 25 H 1.09004 * 110.71064 * 140.66562 * 4 3 2 26 26 H 1.09000 * 110.70421 * 263.90297 * 4 3 2 27 27 H 1.09003 * 111.08490 * 206.38984 * 5 4 3 28 28 H 1.08993 * 110.94629 * 82.53368 * 5 4 3 29 29 H 1.08994 * 109.47398 * 65.75184 * 8 6 2 30 30 H 1.09003 * 109.46908 * 305.74627 * 8 6 2 31 31 H 0.97005 * 119.99577 * 0.02562 * 11 9 8 32 32 H 0.96998 * 119.99779 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9973 1.3765 0.0000 4 6 2.9158 1.5137 1.2325 5 6 3.3044 0.0437 1.5467 6 6 1.9988 -0.7076 1.1851 7 1 1.2882 -0.6518 2.0096 8 6 2.3020 -2.1676 0.8423 9 6 2.7054 -2.9040 2.0937 10 8 2.6496 -2.3472 3.1698 11 7 3.1285 -4.1814 2.0171 12 6 3.5009 -4.8496 3.1548 13 1 3.4511 -4.3537 4.1130 14 6 3.9424 -6.1646 3.0752 15 7 4.0025 -6.7681 1.9094 16 14 4.4493 -7.0752 4.6255 17 1 3.2686 -7.7680 5.2011 18 1 5.4961 -8.0746 4.2927 19 1 4.9861 -6.1069 5.6152 20 1 -0.3634 0.5203 0.8862 21 1 -0.3633 0.5072 -0.8937 22 1 -0.3633 -1.0277 0.0076 23 1 2.5697 1.5540 -0.9106 24 1 1.1752 2.0892 0.0660 25 1 3.8001 2.1034 0.9906 26 1 2.3743 1.9546 2.0695 27 1 3.5470 -0.0808 2.6021 28 1 4.1309 -0.2841 0.9164 29 1 3.1154 -2.2094 0.1179 30 1 1.4127 -2.6333 0.4174 31 1 3.1736 -4.6266 1.1564 32 1 4.3111 -7.6860 1.8538 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259829049.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:08 Heat of formation + Delta-G solvation = -65.443569 kcal Electronic energy + Delta-G solvation = -14230.927530 eV Core-core repulsion = 11803.943664 eV Total energy + Delta-G solvation = -2426.983866 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.67410 -39.31435 -35.99276 -33.34669 -32.96267 -32.37041 -27.98135 -26.62673 -25.80017 -22.15648 -21.50930 -20.60827 -19.81870 -17.90917 -16.95319 -16.41757 -16.23562 -15.94349 -15.66175 -14.90869 -14.52518 -14.23543 -13.97318 -13.52049 -13.40326 -13.09703 -12.84024 -12.47094 -12.37763 -12.16503 -12.10049 -12.01087 -11.63731 -11.52694 -11.48353 -10.33845 -10.01884 -9.29752 -8.46783 -5.96040 1.37841 1.41247 1.54427 2.05299 2.29208 2.83151 3.20617 3.53796 3.70804 3.77210 4.06735 4.25848 4.34601 4.47454 4.52261 4.56649 4.67223 4.78185 4.85218 4.94634 5.02494 5.03207 5.14674 5.21575 5.35210 5.41018 5.99494 6.00828 6.18102 6.58509 7.11391 7.55778 8.10612 8.70838 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.062499 B = 0.006505 C = 0.006237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.900652 B = 4303.417619 C = 4488.190097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.542 5.542 3 C 0.044 3.956 4 C -0.135 4.135 5 C -0.123 4.123 6 C 0.097 3.903 7 H 0.040 0.960 8 C -0.102 4.102 9 C 0.441 3.559 10 O -0.631 6.631 11 N -0.573 5.573 12 C -0.336 4.336 13 H 0.080 0.920 14 C -0.014 4.014 15 N -0.921 5.921 16 Si 0.994 3.006 17 H -0.270 1.270 18 H -0.270 1.270 19 H -0.272 1.272 20 H 0.025 0.975 21 H 0.088 0.912 22 H 0.062 0.938 23 H 0.088 0.912 24 H 0.070 0.930 25 H 0.092 0.908 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.396 0.604 32 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.570 11.741 -5.718 13.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.266 5.266 3 C -0.084 4.084 4 C -0.173 4.173 5 C -0.161 4.161 6 C -0.012 4.012 7 H 0.058 0.942 8 C -0.143 4.143 9 C 0.229 3.771 10 O -0.519 6.519 11 N -0.209 5.209 12 C -0.466 4.466 13 H 0.098 0.902 14 C -0.214 4.214 15 N -0.562 5.562 16 Si 0.818 3.182 17 H -0.196 1.196 18 H -0.195 1.195 19 H -0.197 1.197 20 H 0.044 0.956 21 H 0.107 0.893 22 H 0.081 0.919 23 H 0.106 0.894 24 H 0.088 0.912 25 H 0.111 0.889 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.113 0.887 30 H 0.109 0.891 31 H 0.230 0.770 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.409 11.662 -5.536 13.352 hybrid contribution -0.046 -0.619 1.096 1.260 sum -3.455 11.043 -4.440 12.394 Atomic orbital electron populations 1.22592 0.86852 1.02215 1.01233 1.63389 1.08784 1.14967 1.39456 1.22892 0.98359 0.88456 0.98663 1.22794 1.00653 0.95748 0.98126 1.22674 0.96787 0.95702 1.00952 1.22039 0.96326 0.92384 0.90422 0.94202 1.21288 1.03210 0.95002 0.94751 1.20854 0.82288 0.82521 0.91420 1.90465 1.60692 1.68516 1.32205 1.41989 1.57804 1.11275 1.09871 1.19704 1.42384 0.95893 0.88585 0.90232 1.26077 0.96792 0.97015 1.01468 1.69680 1.47237 1.14027 1.25238 0.84910 0.78292 0.77717 0.77297 1.19590 1.19462 1.19717 0.95645 0.89296 0.91919 0.89374 0.91203 0.88923 0.91659 0.92653 0.91180 0.88667 0.89062 0.77025 0.91258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.11 127.69 1.16 1.61 16 2 N -0.54 -14.64 5.10 -886.61 -4.52 -19.16 16 3 C 0.04 0.95 6.90 86.65 0.60 1.55 16 4 C -0.14 -3.20 6.94 31.82 0.22 -2.97 16 5 C -0.12 -3.97 5.95 32.02 0.19 -3.78 16 6 C 0.10 3.28 2.05 45.39 0.09 3.37 16 7 H 0.04 1.54 7.44 -2.39 -0.02 1.52 16 8 C -0.10 -3.78 5.53 29.85 0.17 -3.62 16 9 C 0.44 21.66 7.55 87.66 0.66 22.32 16 10 O -0.63 -35.19 14.51 -3.07 -0.04 -35.24 16 11 N -0.57 -30.39 5.29 -306.98 -1.62 -32.01 16 12 C -0.34 -19.48 9.68 84.04 0.81 -18.66 16 13 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 14 C -0.01 -0.75 5.50 84.93 0.47 -0.29 16 15 N -0.92 -50.65 13.05 21.66 0.28 -50.37 16 16 Si 0.99 43.43 29.55 68.60 2.03 45.45 16 17 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 18 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 19 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 20 H 0.02 0.58 8.11 -2.39 -0.02 0.56 16 21 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 22 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 23 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 24 H 0.07 1.28 7.58 -2.39 -0.02 1.26 16 25 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.05 2.10 7.50 -2.39 -0.02 2.08 16 28 H 0.07 2.23 7.96 -2.39 -0.02 2.21 16 29 H 0.09 3.28 8.01 -2.39 -0.02 3.26 16 30 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 31 H 0.40 20.12 7.90 -92.70 -0.73 19.39 16 32 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 Total: -1.00 -65.25 266.86 0.87 -64.39 By element: Atomic # 1 Polarization: 27.04 SS G_CDS: 0.37 Total: 27.41 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: 4.37 Total: -0.48 kcal Atomic # 7 Polarization: -95.68 SS G_CDS: -5.86 Total: -101.54 kcal Atomic # 8 Polarization: -35.19 SS G_CDS: -0.04 Total: -35.24 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.45 kcal Total: -65.25 0.87 -64.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259829049.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.056 kcal (2) G-P(sol) polarization free energy of solvation -65.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds