Wall clock time and date at job start Mon Mar 30 2020 02:49:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46899 * 1
3 3 C 1.47441 * 110.99771 * 2 1
4 4 C 1.54321 * 107.23341 * 123.25945 * 3 2 1
5 5 C 1.55262 * 103.08615 * 22.20356 * 4 3 2
6 6 C 1.47847 * 111.00003 * 120.83980 * 2 1 3
7 7 H 1.08993 * 110.37796 * 332.57925 * 6 2 1
8 8 C 1.53009 * 110.37023 * 94.81153 * 6 2 1
9 9 C 1.50700 * 109.46791 * 185.75330 * 8 6 2
10 10 O 1.21294 * 120.00228 * 5.56419 * 9 8 6
11 11 N 1.34776 * 120.00082 * 185.57181 * 9 8 6
12 12 C 1.37097 * 120.00431 * 179.72043 * 11 9 8
13 13 H 1.08001 * 119.99437 * 0.27475 * 12 11 9
14 14 C 1.38949 * 120.00084 * 180.27352 * 12 11 9
15 15 N 1.31405 * 120.00120 * 359.97438 * 14 12 11
16 16 Si 1.86802 * 119.99897 * 180.02562 * 14 12 11
17 17 H 1.48497 * 109.47375 * 89.99747 * 16 14 12
18 18 H 1.48498 * 109.47262 * 210.00295 * 16 14 12
19 19 H 1.48503 * 109.47017 * 330.00254 * 16 14 12
20 20 H 1.09002 * 109.47337 * 300.41741 * 1 2 3
21 21 H 1.08995 * 109.46927 * 60.42477 * 1 2 3
22 22 H 1.09005 * 109.46721 * 180.42341 * 1 2 3
23 23 H 1.09007 * 109.88869 * 242.66138 * 3 2 1
24 24 H 1.09001 * 109.88880 * 3.68950 * 3 2 1
25 25 H 1.09004 * 110.71064 * 140.66562 * 4 3 2
26 26 H 1.09000 * 110.70421 * 263.90297 * 4 3 2
27 27 H 1.09003 * 111.08490 * 206.38984 * 5 4 3
28 28 H 1.08993 * 110.94629 * 82.53368 * 5 4 3
29 29 H 1.08994 * 109.47398 * 65.75184 * 8 6 2
30 30 H 1.09003 * 109.46908 * 305.74627 * 8 6 2
31 31 H 0.97005 * 119.99577 * 0.02562 * 11 9 8
32 32 H 0.96998 * 119.99779 * 179.97438 * 15 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9973 1.3765 0.0000
4 6 2.9158 1.5137 1.2325
5 6 3.3044 0.0437 1.5467
6 6 1.9988 -0.7076 1.1851
7 1 1.2882 -0.6518 2.0096
8 6 2.3020 -2.1676 0.8423
9 6 2.7054 -2.9040 2.0937
10 8 2.6496 -2.3472 3.1698
11 7 3.1285 -4.1814 2.0171
12 6 3.5009 -4.8496 3.1548
13 1 3.4511 -4.3537 4.1130
14 6 3.9424 -6.1646 3.0752
15 7 4.0025 -6.7681 1.9094
16 14 4.4493 -7.0752 4.6255
17 1 3.2686 -7.7680 5.2011
18 1 5.4961 -8.0746 4.2927
19 1 4.9861 -6.1069 5.6152
20 1 -0.3634 0.5203 0.8862
21 1 -0.3633 0.5072 -0.8937
22 1 -0.3633 -1.0277 0.0076
23 1 2.5697 1.5540 -0.9106
24 1 1.1752 2.0892 0.0660
25 1 3.8001 2.1034 0.9906
26 1 2.3743 1.9546 2.0695
27 1 3.5470 -0.0808 2.6021
28 1 4.1309 -0.2841 0.9164
29 1 3.1154 -2.2094 0.1179
30 1 1.4127 -2.6333 0.4174
31 1 3.1736 -4.6266 1.1564
32 1 4.3111 -7.6860 1.8538
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000259829049.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:49:08
Heat of formation + Delta-G solvation = -65.443569 kcal
Electronic energy + Delta-G solvation = -14230.927530 eV
Core-core repulsion = 11803.943664 eV
Total energy + Delta-G solvation = -2426.983866 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 212.127 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-40.67410 -39.31435 -35.99276 -33.34669 -32.96267 -32.37041 -27.98135 -26.62673
-25.80017 -22.15648 -21.50930 -20.60827 -19.81870 -17.90917 -16.95319 -16.41757
-16.23562 -15.94349 -15.66175 -14.90869 -14.52518 -14.23543 -13.97318 -13.52049
-13.40326 -13.09703 -12.84024 -12.47094 -12.37763 -12.16503 -12.10049 -12.01087
-11.63731 -11.52694 -11.48353 -10.33845 -10.01884 -9.29752 -8.46783 -5.96040
1.37841 1.41247 1.54427 2.05299 2.29208 2.83151 3.20617 3.53796
3.70804 3.77210 4.06735 4.25848 4.34601 4.47454 4.52261 4.56649
4.67223 4.78185 4.85218 4.94634 5.02494 5.03207 5.14674 5.21575
5.35210 5.41018 5.99494 6.00828 6.18102 6.58509 7.11391 7.55778
8.10612 8.70838
Molecular weight = 212.13amu
Principal moments of inertia in cm(-1)
A = 0.062499 B = 0.006505 C = 0.006237
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 447.900652 B = 4303.417619 C = 4488.190097
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.019 3.981
2 N -0.542 5.542
3 C 0.044 3.956
4 C -0.135 4.135
5 C -0.123 4.123
6 C 0.097 3.903
7 H 0.040 0.960
8 C -0.102 4.102
9 C 0.441 3.559
10 O -0.631 6.631
11 N -0.573 5.573
12 C -0.336 4.336
13 H 0.080 0.920
14 C -0.014 4.014
15 N -0.921 5.921
16 Si 0.994 3.006
17 H -0.270 1.270
18 H -0.270 1.270
19 H -0.272 1.272
20 H 0.025 0.975
21 H 0.088 0.912
22 H 0.062 0.938
23 H 0.088 0.912
24 H 0.070 0.930
25 H 0.092 0.908
26 H 0.065 0.935
27 H 0.055 0.945
28 H 0.069 0.931
29 H 0.095 0.905
30 H 0.091 0.909
31 H 0.396 0.604
32 H 0.278 0.722
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.570 11.741 -5.718 13.538
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 N -0.266 5.266
3 C -0.084 4.084
4 C -0.173 4.173
5 C -0.161 4.161
6 C -0.012 4.012
7 H 0.058 0.942
8 C -0.143 4.143
9 C 0.229 3.771
10 O -0.519 6.519
11 N -0.209 5.209
12 C -0.466 4.466
13 H 0.098 0.902
14 C -0.214 4.214
15 N -0.562 5.562
16 Si 0.818 3.182
17 H -0.196 1.196
18 H -0.195 1.195
19 H -0.197 1.197
20 H 0.044 0.956
21 H 0.107 0.893
22 H 0.081 0.919
23 H 0.106 0.894
24 H 0.088 0.912
25 H 0.111 0.889
26 H 0.083 0.917
27 H 0.073 0.927
28 H 0.088 0.912
29 H 0.113 0.887
30 H 0.109 0.891
31 H 0.230 0.770
32 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges -3.409 11.662 -5.536 13.352
hybrid contribution -0.046 -0.619 1.096 1.260
sum -3.455 11.043 -4.440 12.394
Atomic orbital electron populations
1.22592 0.86852 1.02215 1.01233 1.63389 1.08784 1.14967 1.39456
1.22892 0.98359 0.88456 0.98663 1.22794 1.00653 0.95748 0.98126
1.22674 0.96787 0.95702 1.00952 1.22039 0.96326 0.92384 0.90422
0.94202 1.21288 1.03210 0.95002 0.94751 1.20854 0.82288 0.82521
0.91420 1.90465 1.60692 1.68516 1.32205 1.41989 1.57804 1.11275
1.09871 1.19704 1.42384 0.95893 0.88585 0.90232 1.26077 0.96792
0.97015 1.01468 1.69680 1.47237 1.14027 1.25238 0.84910 0.78292
0.77717 0.77297 1.19590 1.19462 1.19717 0.95645 0.89296 0.91919
0.89374 0.91203 0.88923 0.91659 0.92653 0.91180 0.88667 0.89062
0.77025 0.91258
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.44 9.11 127.69 1.16 1.61 16
2 N -0.54 -14.64 5.10 -886.61 -4.52 -19.16 16
3 C 0.04 0.95 6.90 86.65 0.60 1.55 16
4 C -0.14 -3.20 6.94 31.82 0.22 -2.97 16
5 C -0.12 -3.97 5.95 32.02 0.19 -3.78 16
6 C 0.10 3.28 2.05 45.39 0.09 3.37 16
7 H 0.04 1.54 7.44 -2.39 -0.02 1.52 16
8 C -0.10 -3.78 5.53 29.85 0.17 -3.62 16
9 C 0.44 21.66 7.55 87.66 0.66 22.32 16
10 O -0.63 -35.19 14.51 -3.07 -0.04 -35.24 16
11 N -0.57 -30.39 5.29 -306.98 -1.62 -32.01 16
12 C -0.34 -19.48 9.68 84.04 0.81 -18.66 16
13 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16
14 C -0.01 -0.75 5.50 84.93 0.47 -0.29 16
15 N -0.92 -50.65 13.05 21.66 0.28 -50.37 16
16 Si 0.99 43.43 29.55 68.60 2.03 45.45 16
17 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16
18 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16
19 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16
20 H 0.02 0.58 8.11 -2.39 -0.02 0.56 16
21 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16
22 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16
23 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16
24 H 0.07 1.28 7.58 -2.39 -0.02 1.26 16
25 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16
26 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16
27 H 0.05 2.10 7.50 -2.39 -0.02 2.08 16
28 H 0.07 2.23 7.96 -2.39 -0.02 2.21 16
29 H 0.09 3.28 8.01 -2.39 -0.02 3.26 16
30 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16
31 H 0.40 20.12 7.90 -92.70 -0.73 19.39 16
32 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16
Total: -1.00 -65.25 266.86 0.87 -64.39
By element:
Atomic # 1 Polarization: 27.04 SS G_CDS: 0.37 Total: 27.41 kcal
Atomic # 6 Polarization: -4.85 SS G_CDS: 4.37 Total: -0.48 kcal
Atomic # 7 Polarization: -95.68 SS G_CDS: -5.86 Total: -101.54 kcal
Atomic # 8 Polarization: -35.19 SS G_CDS: -0.04 Total: -35.24 kcal
Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.45 kcal
Total: -65.25 0.87 -64.39 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259829049.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -1.056 kcal
(2) G-P(sol) polarization free energy of solvation -65.253 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.309 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.865 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.388 kcal
(6) G-S(sol) free energy of system = (1) + (5) -65.444 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds