Wall clock time and date at job start Mon Mar 30 2020 02:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.48566 * 110.99821 * 2 1 4 4 C 1.54372 * 104.59183 * 200.95944 * 3 2 1 5 5 C 1.54263 * 105.06239 * 23.85189 * 4 3 2 6 6 C 1.48553 * 111.00058 * 244.58407 * 2 1 3 7 7 H 1.09001 * 110.41353 * 40.25488 * 6 2 1 8 8 C 1.53003 * 110.40876 * 277.93754 * 6 2 1 9 9 C 1.50706 * 109.47182 * 174.41187 * 8 6 2 10 10 O 1.21287 * 119.99714 * 354.65975 * 9 8 6 11 11 N 1.34770 * 120.00060 * 174.66288 * 9 8 6 12 12 C 1.37104 * 120.00125 * 179.97438 * 11 9 8 13 13 H 1.08001 * 119.99497 * 359.97438 * 12 11 9 14 14 C 1.38950 * 120.00200 * 179.97438 * 12 11 9 15 15 N 1.31408 * 119.99769 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 120.00029 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47021 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47256 * 120.00230 * 16 14 12 19 19 H 1.48501 * 109.47164 * 240.00134 * 16 14 12 20 20 H 1.08998 * 109.47218 * 180.55992 * 1 2 3 21 21 H 1.08996 * 109.47492 * 300.55947 * 1 2 3 22 22 H 1.09005 * 109.47076 * 60.55783 * 1 2 3 23 23 H 1.08998 * 110.40853 * 319.73895 * 3 2 1 24 24 H 1.09002 * 110.40689 * 82.18065 * 3 2 1 25 25 H 1.09010 * 110.32502 * 264.95656 * 4 3 2 26 26 H 1.09000 * 110.32523 * 142.75461 * 4 3 2 27 27 H 1.08996 * 110.32371 * 241.10390 * 5 4 3 28 28 H 1.09001 * 110.31669 * 118.89858 * 5 4 3 29 29 H 1.09005 * 109.47236 * 294.40670 * 8 6 2 30 30 H 1.09000 * 109.47598 * 54.40996 * 8 6 2 31 31 H 0.97000 * 120.00563 * 0.02562 * 11 9 8 32 32 H 0.97003 * 120.00230 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3870 0.0000 4 6 3.4432 1.2502 -0.5344 5 6 3.4432 -0.0539 -1.3584 6 6 2.0014 -0.5952 -1.2526 7 1 1.4098 -0.2712 -2.1089 8 6 2.0077 -2.1222 -1.1571 9 6 2.4204 -2.7069 -2.4834 10 8 2.5896 -1.9806 -3.4399 11 7 2.6015 -4.0367 -2.6066 12 6 2.9764 -4.5686 -3.8133 13 1 3.1263 -3.9219 -4.6653 14 6 3.1636 -5.9396 -3.9402 15 7 2.9808 -6.7264 -2.9037 16 14 3.6738 -6.6643 -5.5845 17 1 3.8125 -5.5748 -6.5840 18 1 4.9738 -7.3661 -5.4342 19 1 2.6410 -7.6282 -6.0424 20 1 -0.3633 -1.0276 0.0100 21 1 -0.3634 0.5225 0.8849 22 1 -0.3633 0.5052 -0.8950 23 1 1.4098 2.0212 -0.6602 24 1 2.0078 1.7916 1.0121 25 1 4.1483 1.1749 0.2935 26 1 3.6937 2.0996 -1.1698 27 1 4.1482 -0.7692 -0.9351 28 1 3.6937 0.1556 -2.3984 29 1 2.7129 -2.4352 -0.3870 30 1 1.0088 -2.4744 -0.8998 31 1 2.4658 -4.6176 -1.8417 32 1 3.1111 -7.6835 -2.9923 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259829055.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:11 Heat of formation + Delta-G solvation = -65.407611 kcal Electronic energy + Delta-G solvation = -14234.492033 eV Core-core repulsion = 11807.509726 eV Total energy + Delta-G solvation = -2426.982307 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.68464 -39.28876 -36.00051 -33.35595 -33.06870 -32.38343 -27.94107 -26.60255 -25.83229 -21.90295 -21.74854 -20.63054 -19.81832 -17.81296 -17.00326 -16.48420 -16.31963 -15.79393 -15.60739 -15.21273 -14.66023 -14.16710 -13.95949 -13.53115 -13.21423 -13.01570 -12.86321 -12.46354 -12.35172 -12.23234 -12.10599 -12.05474 -11.65489 -11.52414 -11.38058 -10.35198 -10.02729 -9.48557 -8.47678 -5.96920 1.36052 1.41070 1.55636 2.03991 2.28797 2.85102 3.19590 3.51043 3.70388 3.77772 4.06123 4.26703 4.31930 4.47854 4.51567 4.57967 4.67224 4.71276 4.84172 4.95049 5.04563 5.06678 5.09887 5.25793 5.28898 5.40600 5.89708 5.98447 6.10117 6.57460 7.10635 7.54646 8.09410 8.70181 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.061285 B = 0.006549 C = 0.006254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.775262 B = 4274.452577 C = 4476.089235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.521 5.521 3 C 0.033 3.967 4 C -0.119 4.119 5 C -0.116 4.116 6 C 0.088 3.912 7 H 0.037 0.963 8 C -0.103 4.103 9 C 0.441 3.559 10 O -0.630 6.630 11 N -0.573 5.573 12 C -0.335 4.335 13 H 0.079 0.921 14 C -0.014 4.014 15 N -0.921 5.921 16 Si 0.995 3.005 17 H -0.273 1.273 18 H -0.270 1.270 19 H -0.270 1.270 20 H 0.067 0.933 21 H 0.090 0.910 22 H 0.024 0.976 23 H 0.046 0.954 24 H 0.102 0.898 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.396 0.604 32 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.384 10.876 7.478 13.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 N -0.245 5.245 3 C -0.094 4.094 4 C -0.156 4.156 5 C -0.155 4.155 6 C -0.021 4.021 7 H 0.055 0.945 8 C -0.144 4.144 9 C 0.229 3.771 10 O -0.518 6.518 11 N -0.209 5.209 12 C -0.465 4.465 13 H 0.097 0.903 14 C -0.214 4.214 15 N -0.562 5.562 16 Si 0.818 3.182 17 H -0.198 1.198 18 H -0.195 1.195 19 H -0.195 1.195 20 H 0.086 0.914 21 H 0.109 0.891 22 H 0.043 0.957 23 H 0.064 0.936 24 H 0.120 0.880 25 H 0.101 0.899 26 H 0.096 0.904 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.115 0.885 30 H 0.110 0.890 31 H 0.230 0.770 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.111 10.849 7.358 13.278 hybrid contribution -0.199 -0.546 -1.257 1.385 sum -2.310 10.304 6.101 12.195 Atomic orbital electron populations 1.22588 0.87219 1.02601 1.01364 1.65268 1.09075 1.16114 1.34008 1.23187 0.94997 0.89133 1.02117 1.22320 0.97104 0.96538 0.99676 1.22234 0.95491 0.97948 0.99805 1.22150 0.96314 0.92950 0.90706 0.94512 1.21313 1.03450 0.95539 0.94088 1.20828 0.82641 0.82354 0.91278 1.90469 1.58309 1.60294 1.42757 1.41989 1.60421 1.06321 1.12200 1.19738 1.44923 0.91848 0.89981 0.90256 1.26079 0.96868 0.95808 1.02599 1.69686 1.49382 1.05614 1.31503 0.84850 0.78267 0.77947 0.77127 1.19771 1.19504 1.19518 0.91403 0.89150 0.95720 0.93597 0.88022 0.89856 0.90360 0.92179 0.93028 0.88529 0.88958 0.77013 0.91247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.25 9.41 127.69 1.20 1.45 16 2 N -0.52 -14.07 5.34 -882.71 -4.71 -18.79 16 3 C 0.03 0.73 6.49 86.45 0.56 1.30 16 4 C -0.12 -2.80 7.00 31.49 0.22 -2.58 16 5 C -0.12 -3.80 5.83 31.49 0.18 -3.62 16 6 C 0.09 2.97 1.88 45.06 0.08 3.05 16 7 H 0.04 1.42 7.55 -2.39 -0.02 1.40 16 8 C -0.10 -3.83 5.37 29.85 0.16 -3.66 16 9 C 0.44 21.66 7.55 87.66 0.66 22.32 16 10 O -0.63 -35.26 14.77 -3.05 -0.05 -35.31 16 11 N -0.57 -30.35 5.29 -306.98 -1.62 -31.97 16 12 C -0.34 -19.43 9.68 84.04 0.81 -18.62 16 13 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 14 C -0.01 -0.75 5.50 84.93 0.47 -0.29 16 15 N -0.92 -50.57 13.05 21.66 0.28 -50.28 16 16 Si 0.99 43.41 29.55 68.60 2.03 45.43 16 17 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 18 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 19 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 20 H 0.07 1.59 7.41 -2.39 -0.02 1.57 16 21 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 22 H 0.02 0.58 7.97 -2.38 -0.02 0.56 16 23 H 0.05 0.98 7.98 -2.39 -0.02 0.96 16 24 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 26 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.06 2.02 7.74 -2.39 -0.02 2.01 16 28 H 0.05 1.91 7.91 -2.39 -0.02 1.89 16 29 H 0.10 3.33 7.96 -2.38 -0.02 3.31 16 30 H 0.09 3.11 7.36 -2.39 -0.02 3.10 16 31 H 0.40 20.08 7.90 -92.71 -0.73 19.35 16 32 H 0.28 14.20 8.31 -92.71 -0.77 13.43 16 Total: -1.00 -65.47 265.85 0.65 -64.82 By element: Atomic # 1 Polarization: 26.38 SS G_CDS: 0.37 Total: 26.75 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: 4.35 Total: -0.65 kcal Atomic # 7 Polarization: -94.99 SS G_CDS: -6.05 Total: -101.05 kcal Atomic # 8 Polarization: -35.26 SS G_CDS: -0.05 Total: -35.31 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Total: -65.47 0.65 -64.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259829055.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.590 kcal (2) G-P(sol) polarization free energy of solvation -65.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds