Wall clock time and date at job start Mon Mar 30 2020 02:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46494 * 120.00136 * 2 1 4 4 C 1.34779 * 120.00046 * 180.02562 * 2 1 3 5 5 O 1.21586 * 120.00206 * 3.86251 * 4 2 1 6 6 N 1.34779 * 120.00093 * 183.86853 * 4 2 1 7 7 C 1.47067 * 136.05382 * 354.27227 * 6 4 2 8 8 C 1.53502 * 88.04772 * 207.05617 * 7 6 4 9 9 C 1.47065 * 136.05989 * 174.22017 * 6 4 2 10 10 H 1.08992 * 113.46656 * 267.75542 * 9 6 4 11 11 C 1.53007 * 113.46291 * 38.13482 * 9 6 4 12 12 C 1.50695 * 109.47337 * 294.99633 * 11 9 6 13 13 H 1.08000 * 119.99806 * 0.02562 * 12 11 9 14 14 C 1.37875 * 119.99928 * 179.97438 * 12 11 9 15 15 N 1.31513 * 120.00084 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00008 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.46893 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47545 * 120.00095 * 16 14 12 19 19 H 1.48497 * 109.46992 * 240.00583 * 16 14 12 20 20 H 1.08995 * 109.47413 * 269.99581 * 1 2 3 21 21 H 1.09001 * 109.47374 * 30.00119 * 1 2 3 22 22 H 1.09007 * 109.47232 * 150.00060 * 1 2 3 23 23 H 1.08995 * 109.47414 * 144.35517 * 3 2 1 24 24 H 1.09002 * 109.47528 * 264.36121 * 3 2 1 25 25 H 1.09001 * 109.47162 * 24.35165 * 3 2 1 26 26 H 1.08993 * 113.46788 * 321.86518 * 7 6 4 27 27 H 1.09002 * 113.46703 * 92.25176 * 7 6 4 28 28 H 1.08998 * 114.20274 * 87.54711 * 8 7 6 29 29 H 1.08994 * 114.20716 * 220.37506 * 8 7 6 30 30 H 1.09001 * 109.47165 * 55.00141 * 11 9 6 31 31 H 1.08999 * 109.46829 * 174.99617 * 11 9 6 32 32 H 0.97004 * 119.99789 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5331 -2.2190 -0.0719 6 7 3.4844 -1.1686 0.0782 7 6 4.5464 -0.1513 0.0732 8 6 5.4910 -1.2158 -0.5019 9 6 4.5365 -2.1879 0.2079 10 1 4.8161 -2.3940 1.2410 11 6 4.2542 -3.4603 -0.5936 12 6 3.0325 -4.1444 -0.0363 13 1 2.5095 -3.7144 0.8051 14 6 2.5820 -5.3186 -0.6013 15 7 3.2186 -5.8418 -1.6262 16 14 1.0672 -6.1662 0.0891 17 1 0.5391 -5.3811 1.2336 18 1 0.0284 -6.2616 -0.9677 19 1 1.4304 -7.5300 0.5508 20 1 -0.3634 -0.0001 1.0276 21 1 -0.3634 0.8900 -0.5138 22 1 -0.3634 -0.8900 -0.5139 23 1 3.1023 1.1658 0.5988 24 1 2.4666 1.5329 -1.0227 25 1 1.5684 2.0515 0.4237 26 1 4.3537 0.6739 -0.6123 27 1 4.8287 0.1864 1.0704 28 1 5.4744 -1.2874 -1.5894 29 1 6.4976 -1.1924 -0.0846 30 1 4.0807 -3.2008 -1.6380 31 1 5.1102 -4.1313 -0.5233 32 1 2.9017 -6.6682 -2.0234 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259875281.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:37 Heat of formation + Delta-G solvation = 7.840750 kcal Electronic energy + Delta-G solvation = -14898.079149 eV Core-core repulsion = 12474.273130 eV Total energy + Delta-G solvation = -2423.806020 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.47045 -38.98692 -36.34154 -34.89562 -31.53316 -30.39802 -28.79402 -26.55467 -26.12895 -23.34036 -22.36721 -19.83444 -18.65799 -17.77693 -17.28789 -16.86760 -16.41710 -15.62070 -15.20840 -14.73278 -14.37442 -14.09090 -13.62248 -13.45275 -13.42631 -13.15030 -12.96890 -12.91196 -12.62633 -12.40489 -12.26680 -12.06230 -11.26350 -10.71805 -10.50492 -10.29741 -9.69503 -9.11344 -8.06841 -6.00544 1.29796 1.33573 1.48536 1.73310 2.45290 2.50134 2.96618 3.29251 3.65130 4.20414 4.29287 4.35370 4.46745 4.51998 4.60383 4.61853 4.74961 4.81235 4.89782 4.94286 5.00768 5.05887 5.37943 5.53852 5.68734 5.78746 5.95682 6.31751 6.38713 7.04369 7.39187 7.59307 7.91144 9.06580 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.030102 B = 0.012346 C = 0.009223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.961887 B = 2267.466555 C = 3035.080693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.647 5.647 3 C 0.073 3.927 4 C 0.701 3.299 5 O -0.598 6.598 6 N -0.665 5.665 7 C 0.107 3.893 8 C -0.139 4.139 9 C 0.146 3.854 10 H 0.084 0.916 11 C 0.021 3.979 12 C -0.458 4.458 13 H 0.054 0.946 14 C -0.013 4.013 15 N -0.949 5.949 16 Si 0.952 3.048 17 H -0.280 1.280 18 H -0.291 1.291 19 H -0.275 1.275 20 H 0.052 0.948 21 H 0.101 0.899 22 H 0.040 0.960 23 H 0.081 0.919 24 H 0.056 0.944 25 H 0.094 0.906 26 H 0.097 0.903 27 H 0.107 0.893 28 H 0.077 0.923 29 H 0.119 0.881 30 H -0.017 1.017 31 H 0.010 0.990 32 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.197 18.432 4.444 19.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.388 5.388 3 C -0.068 4.068 4 C 0.405 3.595 5 O -0.475 6.475 6 N -0.405 5.405 7 C -0.014 4.014 8 C -0.177 4.177 9 C 0.042 3.958 10 H 0.101 0.899 11 C -0.017 4.017 12 C -0.497 4.497 13 H 0.072 0.928 14 C -0.206 4.206 15 N -0.594 5.594 16 Si 0.780 3.220 17 H -0.205 1.205 18 H -0.218 1.218 19 H -0.201 1.201 20 H 0.071 0.929 21 H 0.119 0.881 22 H 0.059 0.941 23 H 0.100 0.900 24 H 0.074 0.926 25 H 0.113 0.887 26 H 0.115 0.885 27 H 0.125 0.875 28 H 0.096 0.904 29 H 0.138 0.862 30 H 0.001 0.999 31 H 0.029 0.971 32 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.583 17.739 4.304 18.322 hybrid contribution -1.130 -1.017 -0.038 1.521 sum 0.453 16.722 4.266 17.263 Atomic orbital electron populations 1.21490 0.77872 1.02736 1.01521 1.47131 1.07095 1.05148 1.79405 1.22252 0.98216 0.84341 1.02037 1.15875 0.81044 0.84037 0.78518 1.91103 1.67622 1.31186 1.57635 1.48865 1.02045 1.12735 1.76849 1.23273 0.83093 0.92823 1.02238 1.23498 0.98759 0.94817 1.00582 1.22772 0.83535 0.90441 0.99020 0.89850 1.19197 0.95688 0.92870 0.93916 1.21562 1.09526 1.04406 1.14171 0.92773 1.25631 0.99774 0.98968 0.96227 1.70091 1.42352 1.21339 1.25648 0.85584 0.80607 0.77858 0.77972 1.20547 1.21820 1.20125 0.92922 0.88089 0.94070 0.90048 0.92589 0.88724 0.88516 0.87505 0.90384 0.86239 0.99850 0.97150 0.93802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.04 10.44 127.77 1.33 4.37 16 2 N -0.65 -21.01 3.27 -890.20 -2.91 -23.93 16 3 C 0.07 1.46 9.14 127.77 1.17 2.62 16 4 C 0.70 31.15 8.44 179.05 1.51 32.66 16 5 O -0.60 -34.27 12.08 -3.99 -0.05 -34.32 16 6 N -0.66 -25.60 3.53 -851.13 -3.00 -28.60 16 7 C 0.11 2.49 5.83 83.18 0.48 2.98 16 8 C -0.14 -3.78 8.03 30.97 0.25 -3.54 16 9 C 0.15 5.92 4.03 41.84 0.17 6.09 16 10 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 11 C 0.02 1.15 4.96 29.85 0.15 1.30 16 12 C -0.46 -28.98 6.57 25.60 0.17 -28.81 16 13 H 0.05 3.56 5.99 -2.91 -0.02 3.55 16 14 C -0.01 -0.82 5.46 84.65 0.46 -0.36 16 15 N -0.95 -63.53 13.29 21.45 0.28 -63.25 16 16 Si 0.95 52.74 29.54 68.60 2.03 54.77 16 17 H -0.28 -15.62 7.11 99.48 0.71 -14.92 16 18 H -0.29 -16.05 7.11 99.48 0.71 -15.35 16 19 H -0.28 -14.30 7.11 99.48 0.71 -13.59 16 20 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 21 H 0.10 1.97 8.07 -2.39 -0.02 1.95 16 22 H 0.04 1.46 7.37 -2.38 -0.02 1.45 16 23 H 0.08 1.46 4.87 -2.39 -0.01 1.45 16 24 H 0.06 1.02 7.82 -2.39 -0.02 1.00 16 25 H 0.09 1.30 8.03 -2.39 -0.02 1.28 16 26 H 0.10 1.77 6.35 -2.39 -0.02 1.75 16 27 H 0.11 1.83 8.01 -2.39 -0.02 1.81 16 28 H 0.08 2.35 8.08 -2.39 -0.02 2.33 16 29 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 30 H -0.02 -1.05 8.08 -2.39 -0.02 -1.07 16 31 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.25 16.09 8.31 -92.70 -0.77 15.32 16 Total: -1.00 -86.74 259.48 3.14 -83.61 By element: Atomic # 1 Polarization: -6.70 SS G_CDS: 1.10 Total: -5.60 kcal Atomic # 6 Polarization: 11.63 SS G_CDS: 5.69 Total: 17.33 kcal Atomic # 7 Polarization: -110.15 SS G_CDS: -5.63 Total: -115.78 kcal Atomic # 8 Polarization: -34.27 SS G_CDS: -0.05 Total: -34.32 kcal Atomic # 14 Polarization: 52.74 SS G_CDS: 2.03 Total: 54.77 kcal Total: -86.74 3.14 -83.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259875281.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.448 kcal (2) G-P(sol) polarization free energy of solvation -86.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds