Wall clock time and date at job start Mon Mar 30 2020 02:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21282 * 120.00121 * 2 1 4 4 N 1.34782 * 120.00389 * 179.97438 * 2 1 3 5 5 C 1.47585 * 134.48580 * 5.17620 * 4 2 1 6 6 C 1.53946 * 86.11493 * 155.35514 * 5 4 2 7 7 C 1.47575 * 134.49628 * 185.16631 * 4 2 1 8 8 H 1.09002 * 113.76693 * 90.34823 * 7 4 2 9 9 C 1.52996 * 113.77275 * 318.94632 * 7 4 2 10 10 N 1.46497 * 109.47578 * 201.63986 * 9 7 4 11 11 C 1.46497 * 120.00264 * 275.23154 * 10 9 7 12 12 C 1.36938 * 119.99796 * 95.22259 * 10 9 7 13 13 H 1.08004 * 119.99852 * 20.00044 * 12 10 9 14 14 C 1.38808 * 120.00484 * 199.98741 * 12 10 9 15 15 N 1.31621 * 119.99780 * 25.21158 * 14 12 10 16 16 Si 1.86798 * 120.00248 * 205.21330 * 14 12 10 17 17 H 1.48501 * 109.47305 * 94.98973 * 16 14 12 18 18 H 1.48502 * 109.47046 * 214.98854 * 16 14 12 19 19 H 1.48500 * 109.47261 * 334.98651 * 16 14 12 20 20 H 1.09003 * 109.46898 * 240.00632 * 1 2 3 21 21 H 1.09001 * 109.47020 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.47090 * 120.00852 * 1 2 3 23 23 H 1.08998 * 113.77196 * 41.05838 * 5 4 2 24 24 H 1.08997 * 113.86815 * 269.66832 * 5 4 2 25 25 H 1.09002 * 113.74030 * 269.26173 * 6 5 4 26 26 H 1.08998 * 113.74776 * 137.95088 * 6 5 4 27 27 H 1.09000 * 109.47185 * 321.64450 * 9 7 4 28 28 H 1.09007 * 109.47090 * 81.64255 * 9 7 4 29 29 H 1.09002 * 109.47354 * 89.18397 * 11 10 9 30 30 H 1.09004 * 109.47299 * 209.18047 * 11 10 9 31 31 H 1.09000 * 109.47429 * 329.18210 * 11 10 9 32 32 H 0.96993 * 119.99961 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.7900 -2.5872 -0.0938 6 6 3.2094 -2.8335 -0.6366 7 6 3.6060 -1.5386 0.0955 8 1 3.9509 -1.6995 1.1169 9 6 4.5349 -0.6320 -0.7145 10 7 5.7899 -1.3370 -0.9869 11 6 6.8670 -1.3255 0.0059 12 6 5.9560 -2.0070 -2.1697 13 1 5.3336 -1.7660 -3.0188 14 6 6.9244 -2.9955 -2.2774 15 7 7.3310 -3.6383 -1.2031 16 14 7.6508 -3.4137 -3.9468 17 1 8.9111 -2.6532 -4.1428 18 1 7.9359 -4.8696 -4.0119 19 1 6.6827 -3.0507 -5.0128 20 1 -0.3633 -0.5138 0.8901 21 1 -0.3633 1.0277 -0.0005 22 1 -0.3633 -0.5140 -0.8899 23 1 1.0019 -2.7785 -0.8221 24 1 1.6008 -3.0576 0.8710 25 1 3.2824 -2.7639 -1.7220 26 1 3.6841 -3.7283 -0.2341 27 1 4.0544 -0.3683 -1.6567 28 1 4.7435 0.2748 -0.1467 29 1 6.7407 -2.1656 0.6889 30 1 7.8287 -1.4103 -0.5003 31 1 6.8333 -0.3921 0.5679 32 1 8.0080 -4.3288 -1.2783 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260103058.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:25 Heat of formation + Delta-G solvation = 21.421804 kcal Electronic energy + Delta-G solvation = -14575.112251 eV Core-core repulsion = 12151.895150 eV Total energy + Delta-G solvation = -2423.217101 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.82017 -37.31717 -35.19618 -31.46355 -30.54755 -27.99758 -27.63012 -25.81500 -23.50561 -21.52147 -20.59990 -18.23553 -16.73311 -16.42134 -15.52448 -15.32271 -14.56868 -14.06262 -13.54412 -13.41695 -12.75289 -12.45553 -12.38443 -12.12442 -11.89153 -11.63256 -11.15565 -10.86574 -10.80379 -10.65597 -10.45057 -10.05609 -9.83720 -9.77697 -9.30953 -8.47688 -8.26036 -6.80011 -5.77853 -3.12527 2.98038 3.23309 3.39928 3.48042 3.49318 4.53559 4.78148 5.07819 5.28868 5.35739 5.40107 5.48224 5.58966 5.60733 5.72872 5.86668 5.95052 6.21974 6.25930 6.57957 6.66904 6.76643 6.87191 7.04965 7.29532 7.59331 7.82925 8.17798 8.36894 8.53939 9.20983 9.87478 10.37510 11.29064 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.045349 B = 0.008321 C = 0.008040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.279273 B = 3364.115098 C = 3481.822897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.524 3.476 3 O -0.552 6.552 4 N -0.641 5.641 5 C 0.092 3.908 6 C -0.119 4.119 7 C 0.116 3.884 8 H 0.079 0.921 9 C 0.157 3.843 10 N -0.593 5.593 11 C 0.157 3.843 12 C -0.254 4.254 13 H 0.068 0.932 14 C 0.005 3.995 15 N -0.896 5.896 16 Si 0.893 3.107 17 H -0.289 1.289 18 H -0.293 1.293 19 H -0.279 1.279 20 H 0.081 0.919 21 H 0.086 0.914 22 H 0.082 0.918 23 H 0.073 0.927 24 H 0.077 0.923 25 H 0.095 0.905 26 H 0.082 0.918 27 H 0.051 0.949 28 H 0.042 0.958 29 H 0.021 0.979 30 H 0.047 0.953 31 H 0.002 0.998 32 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.250 0.615 2.962 11.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.314 3.686 3 O -0.430 6.430 4 N -0.377 5.377 5 C -0.032 4.032 6 C -0.157 4.157 7 C 0.011 3.989 8 H 0.097 0.903 9 C 0.029 3.971 10 N -0.315 5.315 11 C 0.012 3.988 12 C -0.383 4.383 13 H 0.086 0.914 14 C -0.194 4.194 15 N -0.540 5.540 16 Si 0.723 3.277 17 H -0.216 1.216 18 H -0.220 1.220 19 H -0.205 1.205 20 H 0.099 0.901 21 H 0.105 0.895 22 H 0.100 0.900 23 H 0.092 0.908 24 H 0.095 0.905 25 H 0.113 0.887 26 H 0.100 0.900 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.040 0.960 30 H 0.066 0.934 31 H 0.021 0.979 32 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -10.898 1.249 2.978 11.366 hybrid contribution 0.322 -0.536 -0.687 0.929 sum -10.576 0.713 2.290 10.844 Atomic orbital electron populations 1.21853 0.92569 1.04627 1.03631 1.20392 0.89814 0.82411 0.76018 1.90701 1.70840 1.30609 1.50866 1.50517 1.10341 1.04925 1.71960 1.23312 0.99510 0.80071 1.00264 1.23256 0.92193 0.98171 1.02046 1.23805 0.80608 0.94969 0.99512 0.90340 1.20868 0.86483 0.92823 0.96951 1.43999 1.09687 1.59675 1.18159 1.20773 0.91590 0.95013 0.91384 1.19155 1.17939 1.13358 0.87869 0.91426 1.24824 1.01723 0.96136 0.96701 1.70159 1.32340 1.23711 1.27749 0.86412 0.79734 0.77003 0.84525 1.21599 1.21981 1.20463 0.90050 0.89484 0.89972 0.90817 0.90476 0.88696 0.89964 0.93041 0.93930 0.96050 0.93428 0.97947 0.93800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.88 10.08 36.00 0.36 -1.52 16 2 C 0.52 8.87 8.09 -10.99 -0.09 8.78 16 3 O -0.55 -11.72 17.16 5.56 0.10 -11.62 16 4 N -0.64 -10.70 3.49 -171.20 -0.60 -11.30 16 5 C 0.09 1.22 8.61 -2.97 -0.03 1.19 16 6 C -0.12 -2.08 7.20 -25.80 -0.19 -2.27 16 7 C 0.12 2.23 4.56 -66.87 -0.30 1.93 16 8 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 9 C 0.16 3.52 5.07 -4.05 -0.02 3.50 16 10 N -0.59 -14.98 2.80 -181.12 -0.51 -15.49 16 11 C 0.16 3.89 9.10 59.85 0.54 4.43 16 12 C -0.25 -6.85 8.76 -15.06 -0.13 -6.98 16 13 H 0.07 1.82 7.90 -52.48 -0.41 1.41 16 14 C 0.01 0.14 4.76 -17.43 -0.08 0.06 16 15 N -0.90 -25.35 11.37 55.49 0.63 -24.72 16 16 Si 0.89 21.53 29.62 -169.99 -5.04 16.50 16 17 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 18 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 21 H 0.09 0.93 8.12 -51.93 -0.42 0.51 16 22 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 25 H 0.09 1.84 7.80 -51.93 -0.40 1.43 16 26 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 27 H 0.05 1.20 7.96 -51.93 -0.41 0.79 16 28 H 0.04 0.98 7.97 -51.92 -0.41 0.56 16 29 H 0.02 0.55 7.75 -51.93 -0.40 0.15 16 30 H 0.05 1.25 7.07 -51.93 -0.37 0.88 16 31 H 0.00 0.04 7.95 -51.93 -0.41 -0.37 16 32 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 271.69 15.07 4.09 4.09 Total: -1.00 -31.09 271.69 -6.17 -37.26 By element: Atomic # 1 Polarization: 1.07 SS G_CDS: -4.92 Total: -3.85 kcal Atomic # 6 Polarization: 9.06 SS G_CDS: 0.07 Total: 9.13 kcal Atomic # 7 Polarization: -51.03 SS G_CDS: -0.47 Total: -51.51 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.10 Total: -11.62 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.04 Total: 16.50 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -31.09 -6.17 -37.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260103058.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.686 kcal (2) G-P(sol) polarization free energy of solvation -31.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds