Wall clock time and date at job start Mon Mar 30 2020 02:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21282 * 120.00121 * 2 1 4 4 N 1.34782 * 120.00389 * 179.97438 * 2 1 3 5 5 C 1.47585 * 134.48580 * 5.17620 * 4 2 1 6 6 C 1.53946 * 86.11493 * 155.35514 * 5 4 2 7 7 C 1.47575 * 134.49628 * 185.16631 * 4 2 1 8 8 H 1.09002 * 113.76693 * 90.34823 * 7 4 2 9 9 C 1.52996 * 113.77275 * 318.94632 * 7 4 2 10 10 N 1.46497 * 109.47578 * 201.63986 * 9 7 4 11 11 C 1.46497 * 120.00264 * 275.23154 * 10 9 7 12 12 C 1.36938 * 119.99796 * 95.22259 * 10 9 7 13 13 H 1.08004 * 119.99852 * 20.00044 * 12 10 9 14 14 C 1.38808 * 120.00484 * 199.98741 * 12 10 9 15 15 N 1.31621 * 119.99780 * 25.21158 * 14 12 10 16 16 Si 1.86798 * 120.00248 * 205.21330 * 14 12 10 17 17 H 1.48501 * 109.47305 * 94.98973 * 16 14 12 18 18 H 1.48502 * 109.47046 * 214.98854 * 16 14 12 19 19 H 1.48500 * 109.47261 * 334.98651 * 16 14 12 20 20 H 1.09003 * 109.46898 * 240.00632 * 1 2 3 21 21 H 1.09001 * 109.47020 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.47090 * 120.00852 * 1 2 3 23 23 H 1.08998 * 113.77196 * 41.05838 * 5 4 2 24 24 H 1.08997 * 113.86815 * 269.66832 * 5 4 2 25 25 H 1.09002 * 113.74030 * 269.26173 * 6 5 4 26 26 H 1.08998 * 113.74776 * 137.95088 * 6 5 4 27 27 H 1.09000 * 109.47185 * 321.64450 * 9 7 4 28 28 H 1.09007 * 109.47090 * 81.64255 * 9 7 4 29 29 H 1.09002 * 109.47354 * 89.18397 * 11 10 9 30 30 H 1.09004 * 109.47299 * 209.18047 * 11 10 9 31 31 H 1.09000 * 109.47429 * 329.18210 * 11 10 9 32 32 H 0.96993 * 119.99961 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.7900 -2.5872 -0.0938 6 6 3.2094 -2.8335 -0.6366 7 6 3.6060 -1.5386 0.0955 8 1 3.9509 -1.6995 1.1169 9 6 4.5349 -0.6320 -0.7145 10 7 5.7899 -1.3370 -0.9869 11 6 6.8670 -1.3255 0.0059 12 6 5.9560 -2.0070 -2.1697 13 1 5.3336 -1.7660 -3.0188 14 6 6.9244 -2.9955 -2.2774 15 7 7.3310 -3.6383 -1.2031 16 14 7.6508 -3.4137 -3.9468 17 1 8.9111 -2.6532 -4.1428 18 1 7.9359 -4.8696 -4.0119 19 1 6.6827 -3.0507 -5.0128 20 1 -0.3633 -0.5138 0.8901 21 1 -0.3633 1.0277 -0.0005 22 1 -0.3633 -0.5140 -0.8899 23 1 1.0019 -2.7785 -0.8221 24 1 1.6008 -3.0576 0.8710 25 1 3.2824 -2.7639 -1.7220 26 1 3.6841 -3.7283 -0.2341 27 1 4.0544 -0.3683 -1.6567 28 1 4.7435 0.2748 -0.1467 29 1 6.7407 -2.1656 0.6889 30 1 7.8287 -1.4103 -0.5003 31 1 6.8333 -0.3921 0.5679 32 1 8.0080 -4.3288 -1.2783 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260103058.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:25 Heat of formation + Delta-G solvation = 0.913985 kcal Electronic energy + Delta-G solvation = -14576.001537 eV Core-core repulsion = 12151.895150 eV Total energy + Delta-G solvation = -2424.106387 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.20107 -38.77477 -37.11728 -33.42106 -31.86804 -29.43795 -29.05948 -27.88215 -25.15625 -23.00706 -22.32712 -19.62903 -18.71847 -17.78943 -17.10694 -16.69756 -16.36125 -15.53820 -15.34473 -15.20603 -14.23391 -13.97829 -13.80930 -13.52168 -13.10427 -13.04828 -12.88451 -12.73471 -12.48075 -12.38146 -12.28210 -12.02428 -11.83407 -11.42208 -10.72751 -10.52518 -9.66006 -8.84676 -7.87258 -5.24705 1.46703 1.50759 1.58088 1.70346 1.95162 2.53606 3.26491 3.60917 3.72804 3.77818 4.13522 4.27560 4.37693 4.46301 4.60206 4.65561 4.69262 4.73613 4.79490 4.90046 5.04999 5.17593 5.22726 5.25758 5.48378 5.52408 5.67526 6.29315 6.90690 7.11588 7.22441 7.82809 8.30257 9.18639 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.045349 B = 0.008321 C = 0.008040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.279273 B = 3364.115098 C = 3481.822897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.512 3.488 3 O -0.607 6.607 4 N -0.643 5.643 5 C 0.116 3.884 6 C -0.120 4.120 7 C 0.108 3.892 8 H 0.077 0.923 9 C 0.165 3.835 10 N -0.606 5.606 11 C 0.171 3.829 12 C -0.260 4.260 13 H 0.063 0.937 14 C -0.038 4.038 15 N -0.921 5.921 16 Si 0.954 3.046 17 H -0.292 1.292 18 H -0.292 1.292 19 H -0.271 1.271 20 H 0.110 0.890 21 H 0.090 0.910 22 H 0.106 0.894 23 H 0.109 0.891 24 H 0.108 0.892 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.035 0.965 28 H 0.030 0.970 29 H 0.008 0.992 30 H 0.025 0.975 31 H 0.024 0.976 32 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.356 -0.041 2.849 13.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.305 3.695 3 O -0.489 6.489 4 N -0.379 5.379 5 C -0.005 4.005 6 C -0.158 4.158 7 C 0.002 3.998 8 H 0.095 0.905 9 C 0.038 3.962 10 N -0.329 5.329 11 C 0.025 3.975 12 C -0.390 4.390 13 H 0.081 0.919 14 C -0.234 4.234 15 N -0.567 5.567 16 Si 0.783 3.217 17 H -0.219 1.219 18 H -0.219 1.219 19 H -0.196 1.196 20 H 0.128 0.872 21 H 0.109 0.891 22 H 0.125 0.875 23 H 0.127 0.873 24 H 0.126 0.874 25 H 0.091 0.909 26 H 0.089 0.911 27 H 0.054 0.946 28 H 0.049 0.951 29 H 0.026 0.974 30 H 0.044 0.956 31 H 0.042 0.958 32 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -13.053 0.578 2.863 13.376 hybrid contribution 0.969 -0.279 -0.634 1.191 sum -12.084 0.300 2.229 12.291 Atomic orbital electron populations 1.21841 0.87431 1.05832 1.06107 1.21526 0.92145 0.81364 0.74499 1.90678 1.72406 1.32538 1.53282 1.50561 1.09003 1.06672 1.71616 1.23410 0.97401 0.77305 1.02405 1.23122 0.95718 0.96538 1.00450 1.23520 0.82025 0.95274 0.98989 0.90530 1.20733 0.86203 0.92785 0.96491 1.44117 1.11031 1.59632 1.18125 1.20573 0.90477 0.95516 0.90884 1.19281 1.18055 1.13248 0.88387 0.91941 1.25459 1.02038 0.96284 0.99659 1.70264 1.32746 1.24248 1.29405 0.85457 0.78680 0.76476 0.81092 1.21940 1.21879 1.19587 0.87175 0.89091 0.87510 0.87283 0.87385 0.90940 0.91146 0.94611 0.95117 0.97412 0.95608 0.95763 0.94080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 10.08 71.23 0.72 -2.13 16 2 C 0.51 16.40 8.09 87.65 0.71 17.11 16 3 O -0.61 -25.76 17.16 -3.03 -0.05 -25.82 16 4 N -0.64 -20.20 3.49 -813.94 -2.84 -23.04 16 5 C 0.12 2.66 8.61 86.48 0.74 3.40 16 6 C -0.12 -4.11 7.20 31.25 0.23 -3.88 16 7 C 0.11 4.13 4.56 45.09 0.21 4.33 16 8 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 9 C 0.17 7.57 5.07 86.38 0.44 8.01 16 10 N -0.61 -31.22 2.80 -726.94 -2.04 -33.25 16 11 C 0.17 8.59 9.10 127.77 1.16 9.75 16 12 C -0.26 -14.21 8.76 84.03 0.74 -13.48 16 13 H 0.06 3.42 7.90 -2.91 -0.02 3.40 16 14 C -0.04 -2.06 4.76 84.86 0.40 -1.66 16 15 N -0.92 -52.78 11.37 21.65 0.25 -52.54 16 16 Si 0.95 44.47 29.62 68.60 2.03 46.51 16 17 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 18 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 19 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 20 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 21 H 0.09 1.66 8.12 -2.39 -0.02 1.64 16 22 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 23 H 0.11 1.82 8.14 -2.39 -0.02 1.81 16 24 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.07 2.80 7.80 -2.39 -0.02 2.78 16 26 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 27 H 0.04 1.72 7.96 -2.39 -0.02 1.70 16 28 H 0.03 1.45 7.97 -2.38 -0.02 1.43 16 29 H 0.01 0.40 7.75 -2.39 -0.02 0.38 16 30 H 0.03 1.37 7.07 -2.38 -0.02 1.35 16 31 H 0.02 1.08 7.95 -2.39 -0.02 1.06 16 32 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16 Total: -1.00 -68.70 271.69 3.77 -64.92 By element: Atomic # 1 Polarization: 0.68 SS G_CDS: 1.08 Total: 1.76 kcal Atomic # 6 Polarization: 16.11 SS G_CDS: 5.34 Total: 21.46 kcal Atomic # 7 Polarization: -104.20 SS G_CDS: -4.63 Total: -108.83 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: -0.05 Total: -25.82 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.51 kcal Total: -68.70 3.77 -64.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260103058.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.839 kcal (2) G-P(sol) polarization free energy of solvation -68.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds