Wall clock time and date at job start Mon Mar 30 2020 02:45:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 O 1.21285 * 119.99839 * 2 1
4 4 N 1.34774 * 120.00074 * 180.02562 * 2 1 3
5 5 C 1.47083 * 120.87875 * 354.37777 * 4 2 1
6 6 C 1.53241 * 108.51785 * 128.80123 * 5 4 2
7 7 N 1.46900 * 109.34255 * 53.82594 * 6 5 4
8 8 C 1.46900 * 111.00119 * 172.74548 * 7 6 5
9 9 C 1.46890 * 111.26962 * 296.89855 * 7 6 5
10 10 C 1.47081 * 120.88152 * 174.36289 * 4 2 1
11 11 H 1.09008 * 109.78714 * 111.39785 * 10 4 2
12 12 C 1.50701 * 109.62814 * 350.90992 * 10 4 2
13 13 H 1.07993 * 120.00292 * 305.78950 * 12 10 4
14 14 C 1.37883 * 119.99740 * 125.78140 * 12 10 4
15 15 N 1.31504 * 119.99944 * 184.91417 * 14 12 10
16 16 Si 1.86795 * 119.99947 * 4.92362 * 14 12 10
17 17 H 1.48502 * 109.47546 * 84.84771 * 16 14 12
18 18 H 1.48508 * 109.47186 * 324.84737 * 16 14 12
19 19 H 1.48503 * 109.47225 * 204.84814 * 16 14 12
20 20 H 1.09004 * 109.47235 * 239.99171 * 1 2 3
21 21 H 1.08998 * 109.47277 * 359.97438 * 1 2 3
22 22 H 1.08998 * 109.47132 * 119.99257 * 1 2 3
23 23 H 1.08989 * 109.63150 * 9.09215 * 5 4 2
24 24 H 1.09001 * 109.62825 * 248.50413 * 5 4 2
25 25 H 1.09006 * 109.49315 * 293.86820 * 6 5 4
26 26 H 1.09003 * 109.49438 * 173.78881 * 6 5 4
27 27 H 1.09000 * 109.47246 * 184.30799 * 8 7 6
28 28 H 1.09000 * 109.47214 * 304.30519 * 8 7 6
29 29 H 1.09002 * 109.47068 * 64.30270 * 8 7 6
30 30 H 1.09002 * 109.49336 * 303.13927 * 9 7 6
31 31 H 1.09013 * 109.49442 * 183.06187 * 9 7 6
32 32 H 0.96999 * 120.00357 * 180.02562 * 15 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 8 2.1134 1.0504 0.0000
4 7 2.1809 -1.1672 -0.0005
5 6 1.4704 -2.4491 0.1226
6 6 1.9327 -3.3725 -1.0097
7 7 3.3983 -3.4701 -0.9901
8 6 3.8716 -4.4782 -1.9481
9 6 4.0227 -2.1656 -1.2470
10 6 3.6462 -1.1928 -0.1245
11 1 4.0902 -1.5264 0.8135
12 6 4.1500 0.1872 -0.4604
13 1 3.7520 0.7143 -1.3148
14 6 5.1192 0.7770 0.3233
15 7 5.4896 2.0169 0.0890
16 14 5.9062 -0.1854 1.7175
17 1 7.0288 -0.9990 1.1855
18 1 4.8944 -1.0809 2.3337
19 1 6.4210 0.7587 2.7417
20 1 -0.3634 -0.5140 0.8899
21 1 -0.3634 1.0276 0.0005
22 1 -0.3633 -0.5137 -0.8900
23 1 0.3964 -2.2816 0.0430
24 1 1.7024 -2.9054 1.0849
25 1 1.6081 -2.9647 -1.9670
26 1 1.5002 -4.3633 -0.8705
27 1 4.9527 -4.5847 -1.8591
28 1 3.3936 -5.4344 -1.7353
29 1 3.6196 -4.1635 -2.9608
30 1 3.6691 -1.7747 -2.2011
31 1 5.1062 -2.2811 -1.2800
32 1 6.1716 2.4317 0.6401
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260103310.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:45:41
Heat of formation + Delta-G solvation = -6.608350 kcal
Electronic energy + Delta-G solvation = -15107.763881 eV
Core-core repulsion = 12683.331301 eV
Total energy + Delta-G solvation = -2424.432580 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 212.127 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-39.23785 -37.04223 -33.73580 -32.86802 -30.68404 -29.18115 -27.45524 -25.41941
-23.59544 -21.66002 -20.51471 -17.95592 -17.14521 -15.76742 -15.13007 -14.73522
-14.41712 -14.30027 -14.09779 -13.63464 -12.99833 -12.67477 -12.39745 -11.90622
-11.77311 -11.65297 -11.45652 -11.19692 -11.03906 -10.83143 -10.57836 -9.93327
-9.66464 -9.37830 -8.85974 -8.06040 -7.90618 -7.33345 -5.90024 -3.75254
3.35824 3.44084 3.44667 3.79931 3.99921 4.40902 4.52395 5.27229
5.32931 5.41310 5.56846 5.59710 5.67873 5.72491 5.76051 5.85566
5.88210 6.04492 6.17025 6.24615 6.30694 6.35637 6.65410 7.00551
7.39264 7.45575 7.64791 7.76640 8.52507 8.74533 9.17509 9.50802
9.67421 11.23742
Molecular weight = 212.13amu
Principal moments of inertia in cm(-1)
A = 0.024933 B = 0.015774 C = 0.011137
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1122.734618 B = 1774.695647 C = 2513.504726
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.178 4.178
2 C 0.492 3.508
3 O -0.479 6.479
4 N -0.618 5.618
5 C 0.109 3.891
6 C 0.045 3.955
7 N -0.551 5.551
8 C 0.027 3.973
9 C 0.053 3.947
10 C 0.234 3.766
11 H 0.048 0.952
12 C -0.464 4.464
13 H 0.080 0.920
14 C 0.075 3.925
15 N -0.888 5.888
16 Si 0.869 3.131
17 H -0.276 1.276
18 H -0.266 1.266
19 H -0.290 1.290
20 H 0.072 0.928
21 H 0.079 0.921
22 H 0.071 0.929
23 H 0.076 0.924
24 H 0.063 0.937
25 H 0.032 0.968
26 H 0.073 0.927
27 H 0.065 0.935
28 H 0.060 0.940
29 H 0.019 0.981
30 H 0.031 0.969
31 H 0.076 0.924
32 H 0.261 0.739
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.909 -11.994 -1.089 14.408
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.238 4.238
2 C 0.277 3.723
3 O -0.350 6.350
4 N -0.356 5.356
5 C -0.016 4.016
6 C -0.084 4.084
7 N -0.276 5.276
8 C -0.122 4.122
9 C -0.075 4.075
10 C 0.134 3.866
11 H 0.066 0.934
12 C -0.503 4.503
13 H 0.098 0.902
14 C -0.128 4.128
15 N -0.527 5.527
16 Si 0.698 3.302
17 H -0.202 1.202
18 H -0.191 1.191
19 H -0.216 1.216
20 H 0.091 0.909
21 H 0.098 0.902
22 H 0.090 0.910
23 H 0.094 0.906
24 H 0.081 0.919
25 H 0.050 0.950
26 H 0.092 0.908
27 H 0.084 0.916
28 H 0.078 0.922
29 H 0.038 0.962
30 H 0.049 0.951
31 H 0.094 0.906
32 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges -7.300 -11.374 -0.566 13.527
hybrid contribution 0.084 -0.410 -0.082 0.426
sum -7.216 -11.784 -0.649 13.833
Atomic orbital electron populations
1.22106 0.95508 1.03873 1.02353 1.20520 0.88842 0.84352 0.78551
1.90971 1.68552 1.30612 1.44893 1.48897 1.08823 1.04067 1.73774
1.21662 0.96159 0.85650 0.98080 1.22410 0.88912 0.99160 0.97930
1.62109 1.05986 1.09112 1.50393 1.22321 1.00994 0.95349 0.93490
1.22882 0.98824 0.86520 0.99266 1.19592 0.76901 0.95941 0.94194
0.93433 1.20725 1.18747 0.97038 1.13803 0.90233 1.24888 0.96951
0.94458 0.96471 1.69892 1.30852 1.11776 1.40164 0.86996 0.79809
0.80051 0.83356 1.20194 1.19118 1.21595 0.90890 0.90160 0.90990
0.90583 0.91896 0.95011 0.90833 0.91598 0.92163 0.96205 0.95063
0.90602 0.92929
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.77 8.68 36.01 0.31 -2.46 16
2 C 0.49 10.97 7.67 -10.99 -0.08 10.89 16
3 O -0.48 -13.53 13.70 5.55 0.08 -13.46 16
4 N -0.62 -13.21 3.01 -166.23 -0.50 -13.71 16
5 C 0.11 1.73 6.51 -3.60 -0.02 1.70 16
6 C 0.05 0.67 5.62 -3.70 -0.02 0.65 16
7 N -0.55 -9.52 4.88 -242.60 -1.18 -10.70 16
8 C 0.03 0.37 9.58 60.06 0.58 0.95 16
9 C 0.05 1.11 4.89 -3.71 -0.02 1.09 16
10 C 0.23 5.69 2.96 -68.64 -0.20 5.48 16
11 H 0.05 1.22 4.49 -51.92 -0.23 0.98 16
12 C -0.46 -13.51 5.94 -34.44 -0.20 -13.71 16
13 H 0.08 2.62 7.27 -52.49 -0.38 2.23 16
14 C 0.07 2.24 5.47 -17.82 -0.10 2.14 16
15 N -0.89 -28.37 13.96 55.43 0.77 -27.60 16
16 Si 0.87 22.27 27.40 -169.99 -4.66 17.61 16
17 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16
18 H -0.27 -6.65 6.19 56.52 0.35 -6.30 16
19 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16
20 H 0.07 0.95 7.78 -51.93 -0.40 0.54 16
21 H 0.08 1.23 8.12 -51.93 -0.42 0.81 16
22 H 0.07 0.95 7.89 -51.93 -0.41 0.54 16
23 H 0.08 0.95 6.00 -51.94 -0.31 0.64 16
24 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16
25 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16
26 H 0.07 0.88 8.06 -51.93 -0.42 0.46 16
27 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16
28 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16
29 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16
30 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16
31 H 0.08 1.58 8.11 -51.92 -0.42 1.16 16
32 H 0.26 7.81 8.31 -40.82 -0.34 7.48 16
LS Contribution 255.50 15.07 3.85 3.85
Total: -1.00 -34.54 255.50 -6.13 -40.66
By element:
Atomic # 1 Polarization: 1.32 SS G_CDS: -4.72 Total: -3.40 kcal
Atomic # 6 Polarization: 6.50 SS G_CDS: 0.24 Total: 6.74 kcal
Atomic # 7 Polarization: -51.10 SS G_CDS: -0.91 Total: -52.01 kcal
Atomic # 8 Polarization: -13.53 SS G_CDS: 0.08 Total: -13.46 kcal
Atomic # 14 Polarization: 22.27 SS G_CDS: -4.66 Total: 17.61 kcal
Total LS contribution 3.85 Total: 3.85 kcal
Total: -34.54 -6.13 -40.66 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260103310.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 34.055 kcal
(2) G-P(sol) polarization free energy of solvation -34.536 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.481 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.127 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.663 kcal
(6) G-S(sol) free energy of system = (1) + (5) -6.608 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds