Wall clock time and date at job start Mon Mar 30 2020 02:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21285 * 119.99839 * 2 1 4 4 N 1.34774 * 120.00074 * 180.02562 * 2 1 3 5 5 C 1.47083 * 120.87875 * 354.37777 * 4 2 1 6 6 C 1.53241 * 108.51785 * 128.80123 * 5 4 2 7 7 N 1.46900 * 109.34255 * 53.82594 * 6 5 4 8 8 C 1.46900 * 111.00119 * 172.74548 * 7 6 5 9 9 C 1.46890 * 111.26962 * 296.89855 * 7 6 5 10 10 C 1.47081 * 120.88152 * 174.36289 * 4 2 1 11 11 H 1.09008 * 109.78714 * 111.39785 * 10 4 2 12 12 C 1.50701 * 109.62814 * 350.90992 * 10 4 2 13 13 H 1.07993 * 120.00292 * 305.78950 * 12 10 4 14 14 C 1.37883 * 119.99740 * 125.78140 * 12 10 4 15 15 N 1.31504 * 119.99944 * 184.91417 * 14 12 10 16 16 Si 1.86795 * 119.99947 * 4.92362 * 14 12 10 17 17 H 1.48502 * 109.47546 * 84.84771 * 16 14 12 18 18 H 1.48508 * 109.47186 * 324.84737 * 16 14 12 19 19 H 1.48503 * 109.47225 * 204.84814 * 16 14 12 20 20 H 1.09004 * 109.47235 * 239.99171 * 1 2 3 21 21 H 1.08998 * 109.47277 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.47132 * 119.99257 * 1 2 3 23 23 H 1.08989 * 109.63150 * 9.09215 * 5 4 2 24 24 H 1.09001 * 109.62825 * 248.50413 * 5 4 2 25 25 H 1.09006 * 109.49315 * 293.86820 * 6 5 4 26 26 H 1.09003 * 109.49438 * 173.78881 * 6 5 4 27 27 H 1.09000 * 109.47246 * 184.30799 * 8 7 6 28 28 H 1.09000 * 109.47214 * 304.30519 * 8 7 6 29 29 H 1.09002 * 109.47068 * 64.30270 * 8 7 6 30 30 H 1.09002 * 109.49336 * 303.13927 * 9 7 6 31 31 H 1.09013 * 109.49442 * 183.06187 * 9 7 6 32 32 H 0.96999 * 120.00357 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4704 -2.4491 0.1226 6 6 1.9327 -3.3725 -1.0097 7 7 3.3983 -3.4701 -0.9901 8 6 3.8716 -4.4782 -1.9481 9 6 4.0227 -2.1656 -1.2470 10 6 3.6462 -1.1928 -0.1245 11 1 4.0902 -1.5264 0.8135 12 6 4.1500 0.1872 -0.4604 13 1 3.7520 0.7143 -1.3148 14 6 5.1192 0.7770 0.3233 15 7 5.4896 2.0169 0.0890 16 14 5.9062 -0.1854 1.7175 17 1 7.0288 -0.9990 1.1855 18 1 4.8944 -1.0809 2.3337 19 1 6.4210 0.7587 2.7417 20 1 -0.3634 -0.5140 0.8899 21 1 -0.3634 1.0276 0.0005 22 1 -0.3633 -0.5137 -0.8900 23 1 0.3964 -2.2816 0.0430 24 1 1.7024 -2.9054 1.0849 25 1 1.6081 -2.9647 -1.9670 26 1 1.5002 -4.3633 -0.8705 27 1 4.9527 -4.5847 -1.8591 28 1 3.3936 -5.4344 -1.7353 29 1 3.6196 -4.1635 -2.9608 30 1 3.6691 -1.7747 -2.2011 31 1 5.1062 -2.2811 -1.2800 32 1 6.1716 2.4317 0.6401 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260103310.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:41 Heat of formation + Delta-G solvation = -6.608350 kcal Electronic energy + Delta-G solvation = -15107.763881 eV Core-core repulsion = 12683.331301 eV Total energy + Delta-G solvation = -2424.432580 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.23785 -37.04223 -33.73580 -32.86802 -30.68404 -29.18115 -27.45524 -25.41941 -23.59544 -21.66002 -20.51471 -17.95592 -17.14521 -15.76742 -15.13007 -14.73522 -14.41712 -14.30027 -14.09779 -13.63464 -12.99833 -12.67477 -12.39745 -11.90622 -11.77311 -11.65297 -11.45652 -11.19692 -11.03906 -10.83143 -10.57836 -9.93327 -9.66464 -9.37830 -8.85974 -8.06040 -7.90618 -7.33345 -5.90024 -3.75254 3.35824 3.44084 3.44667 3.79931 3.99921 4.40902 4.52395 5.27229 5.32931 5.41310 5.56846 5.59710 5.67873 5.72491 5.76051 5.85566 5.88210 6.04492 6.17025 6.24615 6.30694 6.35637 6.65410 7.00551 7.39264 7.45575 7.64791 7.76640 8.52507 8.74533 9.17509 9.50802 9.67421 11.23742 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.024933 B = 0.015774 C = 0.011137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.734618 B = 1774.695647 C = 2513.504726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.492 3.508 3 O -0.479 6.479 4 N -0.618 5.618 5 C 0.109 3.891 6 C 0.045 3.955 7 N -0.551 5.551 8 C 0.027 3.973 9 C 0.053 3.947 10 C 0.234 3.766 11 H 0.048 0.952 12 C -0.464 4.464 13 H 0.080 0.920 14 C 0.075 3.925 15 N -0.888 5.888 16 Si 0.869 3.131 17 H -0.276 1.276 18 H -0.266 1.266 19 H -0.290 1.290 20 H 0.072 0.928 21 H 0.079 0.921 22 H 0.071 0.929 23 H 0.076 0.924 24 H 0.063 0.937 25 H 0.032 0.968 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.019 0.981 30 H 0.031 0.969 31 H 0.076 0.924 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.909 -11.994 -1.089 14.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.277 3.723 3 O -0.350 6.350 4 N -0.356 5.356 5 C -0.016 4.016 6 C -0.084 4.084 7 N -0.276 5.276 8 C -0.122 4.122 9 C -0.075 4.075 10 C 0.134 3.866 11 H 0.066 0.934 12 C -0.503 4.503 13 H 0.098 0.902 14 C -0.128 4.128 15 N -0.527 5.527 16 Si 0.698 3.302 17 H -0.202 1.202 18 H -0.191 1.191 19 H -0.216 1.216 20 H 0.091 0.909 21 H 0.098 0.902 22 H 0.090 0.910 23 H 0.094 0.906 24 H 0.081 0.919 25 H 0.050 0.950 26 H 0.092 0.908 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.038 0.962 30 H 0.049 0.951 31 H 0.094 0.906 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.300 -11.374 -0.566 13.527 hybrid contribution 0.084 -0.410 -0.082 0.426 sum -7.216 -11.784 -0.649 13.833 Atomic orbital electron populations 1.22106 0.95508 1.03873 1.02353 1.20520 0.88842 0.84352 0.78551 1.90971 1.68552 1.30612 1.44893 1.48897 1.08823 1.04067 1.73774 1.21662 0.96159 0.85650 0.98080 1.22410 0.88912 0.99160 0.97930 1.62109 1.05986 1.09112 1.50393 1.22321 1.00994 0.95349 0.93490 1.22882 0.98824 0.86520 0.99266 1.19592 0.76901 0.95941 0.94194 0.93433 1.20725 1.18747 0.97038 1.13803 0.90233 1.24888 0.96951 0.94458 0.96471 1.69892 1.30852 1.11776 1.40164 0.86996 0.79809 0.80051 0.83356 1.20194 1.19118 1.21595 0.90890 0.90160 0.90990 0.90583 0.91896 0.95011 0.90833 0.91598 0.92163 0.96205 0.95063 0.90602 0.92929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.77 8.68 36.01 0.31 -2.46 16 2 C 0.49 10.97 7.67 -10.99 -0.08 10.89 16 3 O -0.48 -13.53 13.70 5.55 0.08 -13.46 16 4 N -0.62 -13.21 3.01 -166.23 -0.50 -13.71 16 5 C 0.11 1.73 6.51 -3.60 -0.02 1.70 16 6 C 0.05 0.67 5.62 -3.70 -0.02 0.65 16 7 N -0.55 -9.52 4.88 -242.60 -1.18 -10.70 16 8 C 0.03 0.37 9.58 60.06 0.58 0.95 16 9 C 0.05 1.11 4.89 -3.71 -0.02 1.09 16 10 C 0.23 5.69 2.96 -68.64 -0.20 5.48 16 11 H 0.05 1.22 4.49 -51.92 -0.23 0.98 16 12 C -0.46 -13.51 5.94 -34.44 -0.20 -13.71 16 13 H 0.08 2.62 7.27 -52.49 -0.38 2.23 16 14 C 0.07 2.24 5.47 -17.82 -0.10 2.14 16 15 N -0.89 -28.37 13.96 55.43 0.77 -27.60 16 16 Si 0.87 22.27 27.40 -169.99 -4.66 17.61 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 18 H -0.27 -6.65 6.19 56.52 0.35 -6.30 16 19 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 20 H 0.07 0.95 7.78 -51.93 -0.40 0.54 16 21 H 0.08 1.23 8.12 -51.93 -0.42 0.81 16 22 H 0.07 0.95 7.89 -51.93 -0.41 0.54 16 23 H 0.08 0.95 6.00 -51.94 -0.31 0.64 16 24 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.88 8.06 -51.93 -0.42 0.46 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 29 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.08 1.58 8.11 -51.92 -0.42 1.16 16 32 H 0.26 7.81 8.31 -40.82 -0.34 7.48 16 LS Contribution 255.50 15.07 3.85 3.85 Total: -1.00 -34.54 255.50 -6.13 -40.66 By element: Atomic # 1 Polarization: 1.32 SS G_CDS: -4.72 Total: -3.40 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: 0.24 Total: 6.74 kcal Atomic # 7 Polarization: -51.10 SS G_CDS: -0.91 Total: -52.01 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: 0.08 Total: -13.46 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.66 Total: 17.61 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -34.54 -6.13 -40.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260103310.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.055 kcal (2) G-P(sol) polarization free energy of solvation -34.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds