Wall clock time and date at job start Mon Mar 30 2020 02:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21285 * 119.99839 * 2 1 4 4 N 1.34774 * 120.00074 * 180.02562 * 2 1 3 5 5 C 1.47083 * 120.87875 * 354.37777 * 4 2 1 6 6 C 1.53241 * 108.51785 * 128.80123 * 5 4 2 7 7 N 1.46900 * 109.34255 * 53.82594 * 6 5 4 8 8 C 1.46900 * 111.00119 * 172.74548 * 7 6 5 9 9 C 1.46890 * 111.26962 * 296.89855 * 7 6 5 10 10 C 1.47081 * 120.88152 * 174.36289 * 4 2 1 11 11 H 1.09008 * 109.78714 * 111.39785 * 10 4 2 12 12 C 1.50701 * 109.62814 * 350.90992 * 10 4 2 13 13 H 1.07993 * 120.00292 * 305.78950 * 12 10 4 14 14 C 1.37883 * 119.99740 * 125.78140 * 12 10 4 15 15 N 1.31504 * 119.99944 * 184.91417 * 14 12 10 16 16 Si 1.86795 * 119.99947 * 4.92362 * 14 12 10 17 17 H 1.48502 * 109.47546 * 84.84771 * 16 14 12 18 18 H 1.48508 * 109.47186 * 324.84737 * 16 14 12 19 19 H 1.48503 * 109.47225 * 204.84814 * 16 14 12 20 20 H 1.09004 * 109.47235 * 239.99171 * 1 2 3 21 21 H 1.08998 * 109.47277 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.47132 * 119.99257 * 1 2 3 23 23 H 1.08989 * 109.63150 * 9.09215 * 5 4 2 24 24 H 1.09001 * 109.62825 * 248.50413 * 5 4 2 25 25 H 1.09006 * 109.49315 * 293.86820 * 6 5 4 26 26 H 1.09003 * 109.49438 * 173.78881 * 6 5 4 27 27 H 1.09000 * 109.47246 * 184.30799 * 8 7 6 28 28 H 1.09000 * 109.47214 * 304.30519 * 8 7 6 29 29 H 1.09002 * 109.47068 * 64.30270 * 8 7 6 30 30 H 1.09002 * 109.49336 * 303.13927 * 9 7 6 31 31 H 1.09013 * 109.49442 * 183.06187 * 9 7 6 32 32 H 0.96999 * 120.00357 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4704 -2.4491 0.1226 6 6 1.9327 -3.3725 -1.0097 7 7 3.3983 -3.4701 -0.9901 8 6 3.8716 -4.4782 -1.9481 9 6 4.0227 -2.1656 -1.2470 10 6 3.6462 -1.1928 -0.1245 11 1 4.0902 -1.5264 0.8135 12 6 4.1500 0.1872 -0.4604 13 1 3.7520 0.7143 -1.3148 14 6 5.1192 0.7770 0.3233 15 7 5.4896 2.0169 0.0890 16 14 5.9062 -0.1854 1.7175 17 1 7.0288 -0.9990 1.1855 18 1 4.8944 -1.0809 2.3337 19 1 6.4210 0.7587 2.7417 20 1 -0.3634 -0.5140 0.8899 21 1 -0.3634 1.0276 0.0005 22 1 -0.3633 -0.5137 -0.8900 23 1 0.3964 -2.2816 0.0430 24 1 1.7024 -2.9054 1.0849 25 1 1.6081 -2.9647 -1.9670 26 1 1.5002 -4.3633 -0.8705 27 1 4.9527 -4.5847 -1.8591 28 1 3.3936 -5.4344 -1.7353 29 1 3.6196 -4.1635 -2.9608 30 1 3.6691 -1.7747 -2.2011 31 1 5.1062 -2.2811 -1.2800 32 1 6.1716 2.4317 0.6401 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260103310.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:41 Heat of formation + Delta-G solvation = -34.790014 kcal Electronic energy + Delta-G solvation = -15108.985929 eV Core-core repulsion = 12683.331301 eV Total energy + Delta-G solvation = -2425.654628 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.89397 -38.63469 -35.40778 -34.86623 -32.54364 -30.55234 -28.85009 -27.30452 -24.94012 -23.40638 -22.04799 -19.62633 -19.26414 -17.42701 -16.81812 -16.23543 -15.97136 -15.92226 -15.56987 -15.24280 -14.62074 -14.43180 -14.23811 -13.25502 -13.13763 -12.98942 -12.91243 -12.84615 -12.70011 -12.41544 -12.05969 -11.84090 -11.63151 -11.37331 -10.97240 -10.00693 -9.43963 -9.03178 -8.16655 -6.04623 1.31079 1.34396 1.42304 2.10734 2.36302 2.40908 3.08256 3.28823 3.95171 4.13373 4.23842 4.31518 4.43155 4.46435 4.54134 4.67190 4.70352 4.73903 4.80618 4.90524 5.03809 5.05839 5.11753 5.21271 5.46837 5.92992 6.07867 6.17858 6.39493 6.77173 7.01709 7.40216 7.81120 9.02547 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.024933 B = 0.015774 C = 0.011137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.734618 B = 1774.695647 C = 2513.504726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.475 3.525 3 O -0.559 6.559 4 N -0.624 5.624 5 C 0.103 3.897 6 C 0.043 3.957 7 N -0.558 5.558 8 C 0.027 3.973 9 C 0.068 3.932 10 C 0.233 3.767 11 H 0.041 0.959 12 C -0.453 4.453 13 H 0.020 0.980 14 C 0.004 3.996 15 N -0.950 5.950 16 Si 0.941 3.059 17 H -0.255 1.255 18 H -0.253 1.253 19 H -0.293 1.293 20 H 0.110 0.890 21 H 0.077 0.923 22 H 0.105 0.895 23 H 0.119 0.881 24 H 0.073 0.927 25 H 0.029 0.971 26 H 0.118 0.882 27 H 0.065 0.935 28 H 0.093 0.907 29 H 0.021 0.979 30 H 0.012 0.988 31 H 0.069 0.931 32 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.855 -15.902 -0.285 18.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.264 3.736 3 O -0.436 6.436 4 N -0.360 5.360 5 C -0.020 4.020 6 C -0.085 4.085 7 N -0.283 5.283 8 C -0.121 4.121 9 C -0.061 4.061 10 C 0.130 3.870 11 H 0.059 0.941 12 C -0.492 4.492 13 H 0.039 0.961 14 C -0.192 4.192 15 N -0.592 5.592 16 Si 0.766 3.234 17 H -0.180 1.180 18 H -0.178 1.178 19 H -0.219 1.219 20 H 0.129 0.871 21 H 0.096 0.904 22 H 0.123 0.877 23 H 0.137 0.863 24 H 0.091 0.909 25 H 0.047 0.953 26 H 0.136 0.864 27 H 0.084 0.916 28 H 0.111 0.889 29 H 0.039 0.961 30 H 0.030 0.970 31 H 0.088 0.912 32 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.294 -15.374 0.224 17.967 hybrid contribution 0.535 0.727 -0.418 0.995 sum -8.759 -14.647 -0.193 17.068 Atomic orbital electron populations 1.21966 0.89248 1.05018 1.05622 1.21757 0.91805 0.83440 0.76647 1.90947 1.70867 1.33160 1.48583 1.48821 1.07900 1.06443 1.72816 1.22096 0.98029 0.82732 0.99098 1.22574 0.87356 1.01286 0.97303 1.62047 1.07537 1.07118 1.51623 1.22413 1.01450 0.95469 0.92743 1.22426 0.98796 0.88240 0.96672 1.19372 0.78999 0.93723 0.94865 0.94141 1.20760 1.17866 0.98844 1.11712 0.96122 1.25804 0.98074 0.95474 0.99868 1.70083 1.32616 1.14195 1.42332 0.85853 0.79377 0.78579 0.79578 1.17971 1.17813 1.21911 0.87134 0.90383 0.87695 0.86346 0.90908 0.95318 0.86350 0.91573 0.88867 0.96058 0.96973 0.91218 0.93194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.41 8.68 71.24 0.62 -3.79 16 2 C 0.47 21.03 7.67 87.66 0.67 21.70 16 3 O -0.56 -33.18 13.70 -3.04 -0.04 -33.22 16 4 N -0.62 -25.75 3.01 -798.23 -2.40 -28.16 16 5 C 0.10 2.77 6.51 86.35 0.56 3.33 16 6 C 0.04 1.07 5.62 86.38 0.49 1.56 16 7 N -0.56 -17.37 4.88 -921.46 -4.50 -21.87 16 8 C 0.03 0.64 9.58 127.69 1.22 1.86 16 9 C 0.07 2.80 4.89 86.38 0.42 3.22 16 10 C 0.23 11.33 2.96 44.21 0.13 11.46 16 11 H 0.04 2.04 4.49 -2.38 -0.01 2.03 16 12 C -0.45 -27.76 5.94 25.60 0.15 -27.60 16 13 H 0.02 1.47 7.27 -2.91 -0.02 1.45 16 14 C 0.00 0.23 5.47 84.66 0.46 0.70 16 15 N -0.95 -64.58 13.96 21.45 0.30 -64.28 16 16 Si 0.94 47.31 27.40 68.60 1.88 49.19 16 17 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 18 H -0.25 -12.04 6.19 99.48 0.62 -11.42 16 19 H -0.29 -14.70 7.11 99.48 0.71 -13.99 16 20 H 0.11 2.28 7.78 -2.38 -0.02 2.26 16 21 H 0.08 2.24 8.12 -2.39 -0.02 2.22 16 22 H 0.10 2.26 7.89 -2.39 -0.02 2.25 16 23 H 0.12 2.21 6.00 -2.39 -0.01 2.20 16 24 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.03 0.75 8.14 -2.38 -0.02 0.73 16 26 H 0.12 2.00 8.06 -2.39 -0.02 1.98 16 27 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.09 1.64 8.08 -2.39 -0.02 1.62 16 29 H 0.02 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.07 2.90 8.11 -2.38 -0.02 2.88 16 32 H 0.26 16.51 8.31 -92.71 -0.77 15.73 16 Total: -1.00 -83.66 255.50 0.97 -82.70 By element: Atomic # 1 Polarization: 2.21 SS G_CDS: 1.00 Total: 3.21 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: 4.73 Total: 12.43 kcal Atomic # 7 Polarization: -107.70 SS G_CDS: -6.60 Total: -114.30 kcal Atomic # 8 Polarization: -33.18 SS G_CDS: -0.04 Total: -33.22 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 1.88 Total: 49.19 kcal Total: -83.66 0.97 -82.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260103310.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.906 kcal (2) G-P(sol) polarization free energy of solvation -83.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds