Wall clock time and date at job start Mon Mar 30 2020 02:45:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 O 1.21285 * 119.99839 * 2 1
4 4 N 1.34774 * 120.00074 * 180.02562 * 2 1 3
5 5 C 1.47083 * 120.87875 * 354.37777 * 4 2 1
6 6 C 1.53241 * 108.51785 * 128.80123 * 5 4 2
7 7 N 1.46900 * 109.34255 * 53.82594 * 6 5 4
8 8 C 1.46900 * 111.00119 * 172.74548 * 7 6 5
9 9 C 1.46890 * 111.26962 * 296.89855 * 7 6 5
10 10 C 1.47081 * 120.88152 * 174.36289 * 4 2 1
11 11 H 1.09008 * 109.78714 * 111.39785 * 10 4 2
12 12 C 1.50701 * 109.62814 * 350.90992 * 10 4 2
13 13 H 1.07993 * 120.00292 * 305.78950 * 12 10 4
14 14 C 1.37883 * 119.99740 * 125.78140 * 12 10 4
15 15 N 1.31504 * 119.99944 * 184.91417 * 14 12 10
16 16 Si 1.86795 * 119.99947 * 4.92362 * 14 12 10
17 17 H 1.48502 * 109.47546 * 84.84771 * 16 14 12
18 18 H 1.48508 * 109.47186 * 324.84737 * 16 14 12
19 19 H 1.48503 * 109.47225 * 204.84814 * 16 14 12
20 20 H 1.09004 * 109.47235 * 239.99171 * 1 2 3
21 21 H 1.08998 * 109.47277 * 359.97438 * 1 2 3
22 22 H 1.08998 * 109.47132 * 119.99257 * 1 2 3
23 23 H 1.08989 * 109.63150 * 9.09215 * 5 4 2
24 24 H 1.09001 * 109.62825 * 248.50413 * 5 4 2
25 25 H 1.09006 * 109.49315 * 293.86820 * 6 5 4
26 26 H 1.09003 * 109.49438 * 173.78881 * 6 5 4
27 27 H 1.09000 * 109.47246 * 184.30799 * 8 7 6
28 28 H 1.09000 * 109.47214 * 304.30519 * 8 7 6
29 29 H 1.09002 * 109.47068 * 64.30270 * 8 7 6
30 30 H 1.09002 * 109.49336 * 303.13927 * 9 7 6
31 31 H 1.09013 * 109.49442 * 183.06187 * 9 7 6
32 32 H 0.96999 * 120.00357 * 180.02562 * 15 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 8 2.1134 1.0504 0.0000
4 7 2.1809 -1.1672 -0.0005
5 6 1.4704 -2.4491 0.1226
6 6 1.9327 -3.3725 -1.0097
7 7 3.3983 -3.4701 -0.9901
8 6 3.8716 -4.4782 -1.9481
9 6 4.0227 -2.1656 -1.2470
10 6 3.6462 -1.1928 -0.1245
11 1 4.0902 -1.5264 0.8135
12 6 4.1500 0.1872 -0.4604
13 1 3.7520 0.7143 -1.3148
14 6 5.1192 0.7770 0.3233
15 7 5.4896 2.0169 0.0890
16 14 5.9062 -0.1854 1.7175
17 1 7.0288 -0.9990 1.1855
18 1 4.8944 -1.0809 2.3337
19 1 6.4210 0.7587 2.7417
20 1 -0.3634 -0.5140 0.8899
21 1 -0.3634 1.0276 0.0005
22 1 -0.3633 -0.5137 -0.8900
23 1 0.3964 -2.2816 0.0430
24 1 1.7024 -2.9054 1.0849
25 1 1.6081 -2.9647 -1.9670
26 1 1.5002 -4.3633 -0.8705
27 1 4.9527 -4.5847 -1.8591
28 1 3.3936 -5.4344 -1.7353
29 1 3.6196 -4.1635 -2.9608
30 1 3.6691 -1.7747 -2.2011
31 1 5.1062 -2.2811 -1.2800
32 1 6.1716 2.4317 0.6401
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260103310.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:45:41
Heat of formation + Delta-G solvation = -34.790014 kcal
Electronic energy + Delta-G solvation = -15108.985929 eV
Core-core repulsion = 12683.331301 eV
Total energy + Delta-G solvation = -2425.654628 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 212.127 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-40.89397 -38.63469 -35.40778 -34.86623 -32.54364 -30.55234 -28.85009 -27.30452
-24.94012 -23.40638 -22.04799 -19.62633 -19.26414 -17.42701 -16.81812 -16.23543
-15.97136 -15.92226 -15.56987 -15.24280 -14.62074 -14.43180 -14.23811 -13.25502
-13.13763 -12.98942 -12.91243 -12.84615 -12.70011 -12.41544 -12.05969 -11.84090
-11.63151 -11.37331 -10.97240 -10.00693 -9.43963 -9.03178 -8.16655 -6.04623
1.31079 1.34396 1.42304 2.10734 2.36302 2.40908 3.08256 3.28823
3.95171 4.13373 4.23842 4.31518 4.43155 4.46435 4.54134 4.67190
4.70352 4.73903 4.80618 4.90524 5.03809 5.05839 5.11753 5.21271
5.46837 5.92992 6.07867 6.17858 6.39493 6.77173 7.01709 7.40216
7.81120 9.02547
Molecular weight = 212.13amu
Principal moments of inertia in cm(-1)
A = 0.024933 B = 0.015774 C = 0.011137
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1122.734618 B = 1774.695647 C = 2513.504726
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.159 4.159
2 C 0.475 3.525
3 O -0.559 6.559
4 N -0.624 5.624
5 C 0.103 3.897
6 C 0.043 3.957
7 N -0.558 5.558
8 C 0.027 3.973
9 C 0.068 3.932
10 C 0.233 3.767
11 H 0.041 0.959
12 C -0.453 4.453
13 H 0.020 0.980
14 C 0.004 3.996
15 N -0.950 5.950
16 Si 0.941 3.059
17 H -0.255 1.255
18 H -0.253 1.253
19 H -0.293 1.293
20 H 0.110 0.890
21 H 0.077 0.923
22 H 0.105 0.895
23 H 0.119 0.881
24 H 0.073 0.927
25 H 0.029 0.971
26 H 0.118 0.882
27 H 0.065 0.935
28 H 0.093 0.907
29 H 0.021 0.979
30 H 0.012 0.988
31 H 0.069 0.931
32 H 0.259 0.741
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.855 -15.902 -0.285 18.711
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.219 4.219
2 C 0.264 3.736
3 O -0.436 6.436
4 N -0.360 5.360
5 C -0.020 4.020
6 C -0.085 4.085
7 N -0.283 5.283
8 C -0.121 4.121
9 C -0.061 4.061
10 C 0.130 3.870
11 H 0.059 0.941
12 C -0.492 4.492
13 H 0.039 0.961
14 C -0.192 4.192
15 N -0.592 5.592
16 Si 0.766 3.234
17 H -0.180 1.180
18 H -0.178 1.178
19 H -0.219 1.219
20 H 0.129 0.871
21 H 0.096 0.904
22 H 0.123 0.877
23 H 0.137 0.863
24 H 0.091 0.909
25 H 0.047 0.953
26 H 0.136 0.864
27 H 0.084 0.916
28 H 0.111 0.889
29 H 0.039 0.961
30 H 0.030 0.970
31 H 0.088 0.912
32 H 0.068 0.932
Dipole moment (debyes) X Y Z Total
from point charges -9.294 -15.374 0.224 17.967
hybrid contribution 0.535 0.727 -0.418 0.995
sum -8.759 -14.647 -0.193 17.068
Atomic orbital electron populations
1.21966 0.89248 1.05018 1.05622 1.21757 0.91805 0.83440 0.76647
1.90947 1.70867 1.33160 1.48583 1.48821 1.07900 1.06443 1.72816
1.22096 0.98029 0.82732 0.99098 1.22574 0.87356 1.01286 0.97303
1.62047 1.07537 1.07118 1.51623 1.22413 1.01450 0.95469 0.92743
1.22426 0.98796 0.88240 0.96672 1.19372 0.78999 0.93723 0.94865
0.94141 1.20760 1.17866 0.98844 1.11712 0.96122 1.25804 0.98074
0.95474 0.99868 1.70083 1.32616 1.14195 1.42332 0.85853 0.79377
0.78579 0.79578 1.17971 1.17813 1.21911 0.87134 0.90383 0.87695
0.86346 0.90908 0.95318 0.86350 0.91573 0.88867 0.96058 0.96973
0.91218 0.93194
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -4.41 8.68 71.24 0.62 -3.79 16
2 C 0.47 21.03 7.67 87.66 0.67 21.70 16
3 O -0.56 -33.18 13.70 -3.04 -0.04 -33.22 16
4 N -0.62 -25.75 3.01 -798.23 -2.40 -28.16 16
5 C 0.10 2.77 6.51 86.35 0.56 3.33 16
6 C 0.04 1.07 5.62 86.38 0.49 1.56 16
7 N -0.56 -17.37 4.88 -921.46 -4.50 -21.87 16
8 C 0.03 0.64 9.58 127.69 1.22 1.86 16
9 C 0.07 2.80 4.89 86.38 0.42 3.22 16
10 C 0.23 11.33 2.96 44.21 0.13 11.46 16
11 H 0.04 2.04 4.49 -2.38 -0.01 2.03 16
12 C -0.45 -27.76 5.94 25.60 0.15 -27.60 16
13 H 0.02 1.47 7.27 -2.91 -0.02 1.45 16
14 C 0.00 0.23 5.47 84.66 0.46 0.70 16
15 N -0.95 -64.58 13.96 21.45 0.30 -64.28 16
16 Si 0.94 47.31 27.40 68.60 1.88 49.19 16
17 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16
18 H -0.25 -12.04 6.19 99.48 0.62 -11.42 16
19 H -0.29 -14.70 7.11 99.48 0.71 -13.99 16
20 H 0.11 2.28 7.78 -2.38 -0.02 2.26 16
21 H 0.08 2.24 8.12 -2.39 -0.02 2.22 16
22 H 0.10 2.26 7.89 -2.39 -0.02 2.25 16
23 H 0.12 2.21 6.00 -2.39 -0.01 2.20 16
24 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16
25 H 0.03 0.75 8.14 -2.38 -0.02 0.73 16
26 H 0.12 2.00 8.06 -2.39 -0.02 1.98 16
27 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16
28 H 0.09 1.64 8.08 -2.39 -0.02 1.62 16
29 H 0.02 0.50 8.14 -2.39 -0.02 0.48 16
30 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16
31 H 0.07 2.90 8.11 -2.38 -0.02 2.88 16
32 H 0.26 16.51 8.31 -92.71 -0.77 15.73 16
Total: -1.00 -83.66 255.50 0.97 -82.70
By element:
Atomic # 1 Polarization: 2.21 SS G_CDS: 1.00 Total: 3.21 kcal
Atomic # 6 Polarization: 7.70 SS G_CDS: 4.73 Total: 12.43 kcal
Atomic # 7 Polarization: -107.70 SS G_CDS: -6.60 Total: -114.30 kcal
Atomic # 8 Polarization: -33.18 SS G_CDS: -0.04 Total: -33.22 kcal
Atomic # 14 Polarization: 47.31 SS G_CDS: 1.88 Total: 49.19 kcal
Total: -83.66 0.97 -82.70 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260103310.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 47.906 kcal
(2) G-P(sol) polarization free energy of solvation -83.664 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.758 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.968 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.696 kcal
(6) G-S(sol) free energy of system = (1) + (5) -34.790 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds